mRNA_P-fluviatile_contig10.915.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.915.1
Unique NamemRNA_P-fluviatile_contig10.915.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig10.915.1 vs. uniprot
Match: D7FRX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRX9_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.100e-14
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:  709 DVMKPGP---GGEERDGQEEDQN---ATMDLMGSNRDFPLQVLMLVLVLLGWLQANGLPLCRC 879
            DV+KPGP   GG+   G E++Q     TMDLMGS RDFPLQVL+LVLVLLGWL ANGLPLC C
Sbjct:    3 DVVKPGPPSNGGDADGGGEDEQENGAVTMDLMGSGRDFPLQVLILVLVLLGWLHANGLPLCHC 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRX9_ECTSI1.100e-1468.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:3549977..3555181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_003550.1
Exons2
Model size1684
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.915.1prot_P-fluviatile_contig10.915.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 3550779..3554485 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815417.7692997-UTR-P-fluviatile_contig10:3549976..35507781622815417.7692997-UTR-P-fluviatile_contig10:3549976..3550778Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3549977..3550778 -
1693561787.758094-UTR-P-fluviatile_contig10:3549976..35507781693561787.758094-UTR-P-fluviatile_contig10:3549976..3550778Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3549977..3550778 -
1622815417.8112342-UTR-P-fluviatile_contig10:3554485..35551811622815417.8112342-UTR-P-fluviatile_contig10:3554485..3555181Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3554486..3555181 -
1693561787.9545903-UTR-P-fluviatile_contig10:3554485..35551811693561787.9545903-UTR-P-fluviatile_contig10:3554485..3555181Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3554486..3555181 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815417.7797127-CDS-P-fluviatile_contig10:3550778..35508471622815417.7797127-CDS-P-fluviatile_contig10:3550778..3550847Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3550779..3550847 -
1693561787.9310255-CDS-P-fluviatile_contig10:3550778..35508471693561787.9310255-CDS-P-fluviatile_contig10:3550778..3550847Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3550779..3550847 -
1622815417.789345-CDS-P-fluviatile_contig10:3554368..35544851622815417.789345-CDS-P-fluviatile_contig10:3554368..3554485Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3554369..3554485 -
1693561787.9458578-CDS-P-fluviatile_contig10:3554368..35544851693561787.9458578-CDS-P-fluviatile_contig10:3554368..3554485Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3554369..3554485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.915.1

>prot_P-fluviatile_contig10.915.1 ID=prot_P-fluviatile_contig10.915.1|Name=mRNA_P-fluviatile_contig10.915.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=62bp
MPGGDVMKPGPGGEERDGQEEDQNATMDLMGSNRDFPLQVLMLVLVLLGW
LQANGLPLCRC*
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mRNA from alignment at P-fluviatile_contig10:3549977..3555181-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.915.1 ID=mRNA_P-fluviatile_contig10.915.1|Name=mRNA_P-fluviatile_contig10.915.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5205bp|location=Sequence derived from alignment at P-fluviatile_contig10:3549977..3555181- (Porterinema fluviatile SAG_2381)
CGGTCGTAAGAAACACTTAATTCGAGCGAGGCTCATTTCTTATTATGTCC
CCCACCACTGAACGCAGGCTTCTATGTAGGGTTTAGTGTAGCTCCGACCG
ATGAACGCATTTTCTTACGGCATACTTCTTAAGTAAGCTAATAATTTGAG
CCTAGGTTTCTTCCGAAGATGTTTCTTATGAGCGGGCCGGCACTGTACGC
AAGCTCGCAGCGGTGCATCCATAGTCTACGCACCGGCCCGATATGTCCTC
GCGCCCTCCTGTCTGTCTCTCTTCGACCCGGCGGAGCGAGGAACACTTAA
TCTATAGACTAGTCTACCCTGTACCGCATTGTGGCCACATTCAAGCACGG
TATGCCGTGTTTTGGCCACTGCCCTTCTCTTTTTGCCATTTTAATTCCTT
TATTTTTACTGTTGCGTCACCAAACCATAAATCGGGGGTCTCTCAACCCT
TACCCCGTCGAAACCCCCTCACCCCCGGCGCTCTGCCGGGGCTCGCCTCG
GTGTGCCGGTACTGGTTGCTATCCTGCTTGACGGAAACAACGCGTGGCTC
GGGTGTACACTTAAATGCTTGACACCCGCGATTGAAGGAACGAACCAAGC
AATCGAGCTACCAGACGCGGATATACACGACAGCATAAGAGGAGAAGAGG
CGAAATCAGCCGCTCTTCTGTCGTTCATCGCACTGGAAAGGAAATCATGC
CGGGTGGGGATGTAATGAAGCCAGGTCCAGGCGGGGAGGAGCGAGACGGC
CAGGAGGAGGATCAAAATGCCACCATGGATCTAATGGGCTCAAACCGAGA
CTTTCCACTGCAGGTGAGCGTGCGCGCTGTCCACGCACGACTGCAAATGT
CTCTCTCCGCAACACATACGCGCGAGCGCTATTTTTGCGCTGAAAGAGGA
ACACAGCACTTTTCGATGACCACGTACCCCCAAACCCTTTCACGTACTCG
GTACCCAGGCTTTGCGAATGGTGTTGGCCTAGTTTACCACAGACATATGA
AGAGATGTATTTGCTGCCGATAGGGTAAACCACAGAGTCGTAGGGACAGA
GTTGTCAAACGAGCCCTCGTTGGGAATGAAACGAGGCAGTTTCCTCTCTC
TCCCCGCTAGACCACCTTTCATGCTCTCGTGTGCTCACCGCGTTTGACCT
ATGCCTCATCTCGAGCAGAGCCGAGTACCATCAAAGTTCCCAAAGCTGAT
TGCCTATTTACCCATTAGCGTCTGCATCATGTATCTCAACACGCGAACGT
CCACTAGTCTACCAGCCAGGTGCGTCAAAAAATATAGTCACGTCGCGCGG
GCATATTTTCCTTCAAACGTTGTTTTTTCATGGGTAGTATTCGGGTGTTT
TACAATACGGAGTCCAAACTTGGGTTTGGACTTGGAGTCCAAAGTTACAA
CCAAGTCCAGACCCGATTTTGGTTTCACATGAGCGTGCTGAGAGCAGAGC
GGTGATTCGGTTTTGGGTTCAGCGCAAGTGCGCCACCGATCTCCCCACCC
TCTCCTGCGCCCCGAACTGAAGTTAATTTTTATTCGAACACACCAGGCTG
TTCCACAAGATATACACTCCCAGAGTCAAGTGAAACCTCTAAAAATCAGA
CCCGGCACTCTTGATAACACACAGACGTAGCAATACATGGTGTATGGAAG
TGTACGTCATTGTGAAGGGCGTTGGGACGCGGTAGAAATGACATTTGCTT
CGACTACTTTCACCGCTTCCCACGCACACACCAACATTTTCCTCCATCGC
TCTTGTTCGCGTACACTACCGAGAACACTCACAGACTTTGCAATGCGTAC
CCGAAGAAGCTCTGTGATATGTTGAGATGAATAGCTGCGCCTGCGCCTGG
AGAAGGACTTGTCTGTTTGCCTTTTTTCCATTCGTGTCAAAATGTTCAAA
CAAGCGAACATACAGCACACACACAAGCCCGCCAACGGTAGGATGAAGAT
GTTTTGTGGGTACAACTTCCTTGAAAAAACTTTAAAATGGGGATCCATGC
ACCCAACTCCCCTTCCACGCATATAGGAGGGGTTGTGCATGCTCGACCAG
CTCTCTAATGTGGACTCCGCCAGAGCATACATATATATCTATAGCACTTG
CAATGCTCGCTGTCTTGTCTCCCTCGGGGTAACAGGAAACTTGCTGCAGA
CCTGCTCAGCAATACCAAGCTGAGTCAAGTCCAATATGAACTTTTTCTTC
GGACTTTGGGGGCGATTCAGCTTGGCCAAAGTAAAAACTGCGTAGGATCC
TTCAAACTTTGCTGTTCGGGGTAATAGAATGTCCAAAACCAAAACCGAAA
GTGGACTTCGCAAACACCCTTTTTTACTTTGTTCCTGGTCGTCGTTTTTT
TGTTGTTTCTTGTGACCTGTACGCGACGTCACCCCCCAACCCTCCTATAC
CCTCGACCGACATTCTCGTCGTGAGTACTTGTGAGCTACGGGGCGTTGCT
AGGTCAAACAGTAATGTACACTGAACGAAATTGGATGAAAAGAAAGCACA
GCGATCGCGAACATTTGAAAAGCCGCTGTAAAGAACGGAGATCAGACCCA
CCGGGTTCATCTCCCACGGGAGCGTAGCAGTCACTACTCGAATGTGTGCC
GCGTTAGTCTAGCGTTCGGAACGCATTCCTGGTCGTCTGTTGGACATCAA
ACAAAAAGCGACACAGGTTACACGCCACCGCAGCTGTTGTCATTTTTGAC
GTATCGCCTCGATTTGCTGTCGCAACTCATTCGTGGTCCCCAGCCGAGGG
TGACCCATTCATGCGGTTGAGACTTGTGTTTTCTTTTCTACCTAACACCT
GTGCAGTACTCGATTTCACTATCGGAAGACAAGAAGAGAAATGCCGTCAT
CTCCCTTGATTCGTCTCATTACGGCCCACAAATGCTAGATGTACGAGTGG
GTGGCCCACTCTTGACTCGGAGTACTTGTAACACTCATACAGAAAAAACT
GCCCCAGTTGTGCACATTAAAAAGACACGAAAAAGCTTGGCGTAGTCTTT
GGCTATGGTATTCGTACTCCCAAGAAAGCAGGGCATTATGGAAAAAGAAA
AGAAGGGACTTAAATAACAGACGGCTGCGCAGTACTGCCTACTGTACGCT
GCGGGGTATCCTCTTCCCGCCAAGCAAGTAACTTTTTTGCCTCAATCCAC
CCCACGGGGGGTTGTCTCTCGATAAGCTTCACAAGCACCTCCCTGAAAAG
AGATCGTGGGGCGGATCACCCCGTACCCACAGCTCTAGAGCCGTTGCGCC
TGCTTTGTTTTTAGACCCAGCCATTGAGCCCTTGGGGGGAGATGGTGGAG
GGCTTGCTTTCATGGATGGAAAAAAAGCGCTAGAGACCGGAAAAGGGAGA
GCGCGATAAGCCCCGGAAGGTTGCCAGGGAGTTGAGGAGGAGATTTCAAC
CTAAACAAACTCTCAGGACTCTGTAAAGGTAGCGCCAGATCCAGGCATCG
GACCCTTGAAAATACTCCAAAACGTTTGCGCGGAGTCCCCCCTCTACGGA
CGATCTTGCGGTGAATCTCCCCCTTCACGAACCACTCACCACACGGGGCT
TGTTTTGGATACCGTGCGTGTCTTGACCAGTTACGGATCACCCCGAGACA
GATTGAAAGACGCAACCAGCAGCAATGGCAGTTTAATGATGGATATCTAT
CTAATGCAGAAACGCTCACCACATAGAATCGACTACCATTTGTGCTGAAG
CAACAACAGCGGCAAGCTGTTGTGCGACATATCGCGCCACTTATTGCAGG
AGGTCTGCCACGCGAGAGTAGACGGGACGACATGAGAGGAGGGGGGAGAG
GCCGTCGTTACATATTTGCTGCAAGCCTTCGTGCTGCAGAACTCTGTTAG
AGGTTACCTTTCAGGCGAAACAAACCAATGGTGAATGCCTTGATGCCGTA
ATCTGTGTTCCCGCGCAGCCACGCGCGCTTCAACCTGCTCAGGCAATGAA
GTCGTGAAGAGTTTTCAGTCGAAAAGTTGAGTCTACCGGCATTCGGAACT
GTTTGCACTCACACCCGGGCTGAGCCGAGCTGTGTGCGTCGAAGGGAGAG
TCAGCTCTTGCATTTTCATGTCCGTTCACGCCCCCGCTTTAGGTGATTTG
TTGGTGTTCTTTAATCCTGTCAAATTCGATACAATTTCTGCCGATCAAAA
ATGGGATCTAACGTAACTTTTCCGACGAGATGGTTGTACGGGGATATGCT
GTGAGCACCCCTTCTTTAGCTGCGATACATATCATGCAATGAGCACGTGC
GACTCGCCGCAGCTCGCCCCGCCCTTCCTGCCTCACGTTCTCTTGTCCTT
CGTGTCGTTTGCTTTGCGTTGTGTCTGGCGACAGGTCCTGATGCTGGTTT
TGGTGCTGTTGGGCTGGCTTCAGGCGAATGGACTCCCACTCTGCCGCTGC
TGAAGTAGCGTCCTCGTTTATGATTTTATCTGTCGCTTAGCACGATCGAC
AACCGCTTGACGCGGCAGATTGGCAAAAGCAAGGATTTCGTCCTGCCAGA
AGCTGTCCAAACTTGTGGGGCGTCAGCGTTGCTTGACTGGTGGCTGGCCA
CTTGTAAATGGGCGCGAGATCGGGATTTCAGTTTGAGTTGGTAGGATGTG
GGAAGCAGGTTGCCGCATGGCTCTGCCATCGTCGGCTCGTCGCTGTTACC
GGCACTGTCATATCATCTTGTGGAATCATGTAGAGTTGGTATGTAAATGG
TCAAAAGTTGTCAGTAAATGACACCGTCTGCTGTGTGGATGGATCCTCGT
GAAGGTTAGCTCACGTATTTTGAATAAAGTGCAAGATGAAGGGATGTGCG
TGATTTCGCACCGTTAGCTCCACGGCTTTTAGATGCATTTTCAAACTAGT
CCAAAAAGGCTAGCAACCCATGCTTTCGTGGCTCGTTCTTCCGCGTTTTC
GTGCGGTTTTCGTTCTTGTTGCCCCCGGGGCCTAGCAAGTTAATAATTGA
CGTTCTCCTGGTACGGGTCGGCCTGAGAATTTCCGCTGTTGCACAGTCAC
GTTGTTCAGTGGTTTCGATGGTGGCCTGTGCGAGGTCTCTTTGGAGTTAA
ATTCAAACATTTCGTCCCACAAGCCTCATCAACACTGGACCAAGTGTCGG
AATGTGGACGAGCTCTCCGTCGCACCAACGAACAGATTGGCATGTTCGCC
GTGTGTGCTAGGCCTCTTGATTTTATCTTCATTTAGACAAATCATTCTTG
TTCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:3549977..3555181-

>mRNA_P-fluviatile_contig10.915.1 ID=mRNA_P-fluviatile_contig10.915.1|Name=mRNA_P-fluviatile_contig10.915.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=372bp|location=Sequence derived from alignment at P-fluviatile_contig10:3549977..3555181- (Porterinema fluviatile SAG_2381)
ATGCCGGGTGGGGATGTAATGAAGCCAGGTCCAGGCGGGGAGGAGCGAGA
CGGCCAGGAGGAGGATCAAAATGCCACCATGGATCTAATGGGCTCAAACC
GAGACTTTCCACTGCAGATGCCGGGTGGGGATGTAATGAAGCCAGGTCCA
GGCGGGGAGGAGCGAGACGGCCAGGAGGAGGATCAAAATGCCACCATGGA
TCTAATGGGCTCAAACCGAGACTTTCCACTGCAGGTCCTGATGCTGGTTT
TGGTGCTGTTGGGCTGGCTTCAGGCGAATGGACTCCCACTCTGCCGCTGC
TGAGTCCTGATGCTGGTTTTGGTGCTGTTGGGCTGGCTTCAGGCGAATGG
ACTCCCACTCTGCCGCTGCTGA
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