mRNA_P-fluviatile_contig10.897.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.897.1
Unique NamemRNA_P-fluviatile_contig10.897.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:3378555..3380069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size419
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.7681553-CDS-P-fluviatile_contig10:3378555..33786581622815359.7681553-CDS-P-fluviatile_contig10:3378555..3378658Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3378556..3378658 -
1693561604.0969718-CDS-P-fluviatile_contig10:3378555..33786581693561604.0969718-CDS-P-fluviatile_contig10:3378555..3378658Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3378556..3378658 -
1622815359.7788405-CDS-P-fluviatile_contig10:3379755..33800691622815359.7788405-CDS-P-fluviatile_contig10:3379755..3380069Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3379756..3380069 -
1693561604.1144335-CDS-P-fluviatile_contig10:3379755..33800691693561604.1144335-CDS-P-fluviatile_contig10:3379755..3380069Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3379756..3380069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.897.1prot_P-fluviatile_contig10.897.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 3378556..3380069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.897.1

>prot_P-fluviatile_contig10.897.1 ID=prot_P-fluviatile_contig10.897.1|Name=mRNA_P-fluviatile_contig10.897.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=139bp
LAPSSHPSWQLPCTDAAHIMLFTLAAKMVVGICDDERSSHCRHRRRCTRA
WETAVLVGSGLLLSEPTSTVSAFTSFTGFAARISSFGSSSSPTAQLSARQ
FEGSRYRFVEAGYNSRGDSGFNDQGQGGRASAGAPDRGR
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mRNA from alignment at P-fluviatile_contig10:3378555..3380069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.897.1 ID=mRNA_P-fluviatile_contig10.897.1|Name=mRNA_P-fluviatile_contig10.897.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1515bp|location=Sequence derived from alignment at P-fluviatile_contig10:3378555..3380069- (Porterinema fluviatile SAG_2381)
CTCGCCCCGAGCTCTCATCCTTCATGGCAACTCCCTTGCACAGACGCAGC
GCACATCATGCTGTTCACGCTAGCAGCAAAGATGGTGGTTGGTATTTGCG
ATGATGAAAGGTCCAGTCATTGCCGCCATCGAAGGCGATGCACAAGAGCT
TGGGAAACGGCCGTGTTGGTTGGTAGCGGTCTGCTGCTGTCTGAACCGAC
CTCAACGGTCAGCGCCTTCACAAGCTTCACTGGCTTTGCGGCGAGGATTT
CCTCTTTTGGCTCATCATCCTCACCAACCGCGCAGCTCAGCGCTCGTCAA
TTCGAAGGGTCTAGGTACGGGTATGATCCGTGCCTTCCCCCATGCCCGTG
CCTTCCCCCATGTGTGGCACGGACACAGCAAGTGTGCCGTTGCAGTTGAA
CTGATACGTGGGTTGGAGAGCAACATGAGTTGTGCAGGTGCCTCAGGTAC
CTCGTACGAACTACATGTTTTACGAGCCAGAGAGCCATGATCCATCGAAA
CCTCTCGTGCAAAAAAAAAAAGTGTGTGGTCCTTTCAAAATTCCGGTCGT
TCAGCTGTCCCTTTCTTACGCATTGCCCAGCGGTGCTTTGAATCTGAATC
GTCGAAAGCTCCGAGAAGTTTTGCTGTTCCACGAGTGTTGCTGTTGGTCT
CCCACGTCTCCACACACTGCCCGAAAGCATGGGAGAGGAGTTGCTTTTGC
AAAGATGTGGTGGGGGCTGCCAAGCAATGAATGCTTTGGCCAGAGTGCAC
TGACGATGGGACTTATTGTCTTTGAGTACACCCAACTTCGACGATCGACT
TTGGAACGGGAGCGTGACCGAACTCGGTACAGGTTGATCTTGTTGAAAAT
CAACCCAGCTTTGCTTAAAGGCGTGCTACGCGATCTCAATAAGTGCCATA
CCGCAGCGTTGCCGCGCCAGCGTAGCGCTCTTCTACATCGGCGGCAACAC
TCAACTCTTGCATCCTGTGGAGGTGGTCGCGCGGGTCTGTCGGCTGATAT
TTGATTCACATCACCAAATTATCTACACTCCGCCCCGCTGTTTGATCCAC
CAAGTTATTGCAAGTCTGCCCTAGATGCCGAACAACACCATGGGCATCTT
CTTTTGAAGGCATGAGTCACATGCGGAAGACACCTACCGTGTGGAAGTGT
GTGTTTTGTCTGTTTCTCCATCTTCAATACTCCTGGCGCGACTCCTTTCC
TGTCCAAGCCACCCGACGAATTCCGATCCGGCCGATGTGCCGAAAGAAAT
ACGCAAAGTATTTCATTTCGCTCCTCGCCGTTCGCGTCAGCCAGCGATCC
CAAGATAATTTCTTACGCTTGAATATCTTTCCGCTTGTGAACCTCTAATA
AAAGAACGCTCATGAAAATGAGTCTCTCATGTCGCCCCTCGTATGTTGTC
GATGAGACCAGATACCGTTTTGTCGAAGCCGGCTACAACAGCAGGGGCGA
CAGCGGCTTCAACGACCAAGGTCAAGGCGGCCGGGCAAGCGCCGGGGCAC
CAGATCGGGGGCGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:3378555..3380069-

>mRNA_P-fluviatile_contig10.897.1 ID=mRNA_P-fluviatile_contig10.897.1|Name=mRNA_P-fluviatile_contig10.897.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=834bp|location=Sequence derived from alignment at P-fluviatile_contig10:3378555..3380069- (Porterinema fluviatile SAG_2381)
CTCGCCCCGAGCTCTCATCCTTCATGGCAACTCCCTTGCACAGACGCAGC
GCACATCATGCTGTTCACGCTAGCAGCAAAGATGGTGGTTGGTATTTGCG
ATGATGAAAGGTCCAGTCATTGCCGCCATCGAAGGCGATGCACAAGAGCT
TGGGAAACGGCCGTGTTGGTTGGTAGCGGTCTGCTGCTGTCTGAACCGAC
CTCAACGGTCAGCGCCTTCACAAGCTTCACTGGCTTTGCGGCGAGGATTT
CCTCTTTTGGCTCATCATCCTCACCAACCGCGCAGCTCAGCGCTCGTCAA
TTCGAAGGGTCTAGCTCGCCCCGAGCTCTCATCCTTCATGGCAACTCCCT
TGCACAGACGCAGCGCACATCATGCTGTTCACGCTAGCAGCAAAGATGGT
GGTTGGTATTTGCGATGATGAAAGGTCCAGTCATTGCCGCCATCGAAGGC
GATGCACAAGAGCTTGGGAAACGGCCGTGTTGGTTGGTAGCGGTCTGCTG
CTGTCTGAACCGACCTCAACGGTCAGCGCCTTCACAAGCTTCACTGGCTT
TGCGGCGAGGATTTCCTCTTTTGGCTCATCATCCTCACCAACCGCGCAGC
TCAGCGCTCGTCAATTCGAAGGGTCTAGATACCGTTTTGTCGAAGCCGGC
TACAACAGCAGGGGCGACAGCGGCTTCAACGACCAAGGTCAAGGCGGCCG
GGCAAGCGCCGGGGCACCAGATCGGGGGCGGATACCGTTTTGTCGAAGCC
GGCTACAACAGCAGGGGCGACAGCGGCTTCAACGACCAAGGTCAAGGCGG
CCGGGCAAGCGCCGGGGCACCAGATCGGGGGCGG
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