mRNA_P-fluviatile_contig10.893.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.893.1
Unique NamemRNA_P-fluviatile_contig10.893.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig10.893.1 vs. uniprot
Match: A0A2C9K100_BIOGL (Dynein light chain n=4 Tax=Euthyneura TaxID=216307 RepID=A0A2C9K100_BIOGL)

HSP 1 Score: 162 bits (409), Expect = 1.870e-50
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MSERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 240
            MSERKAVIKNADMSEDMQQDAVDCA+QALEKYNIEKDIAAFIKKEFDKK+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:    1 MSERKAVIKNADMSEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
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BLAST of mRNA_P-fluviatile_contig10.893.1 vs. uniprot
Match: C1FDC9_MICCC (Dynein light chain n=2 Tax=Eukaryota TaxID=2759 RepID=C1FDC9_MICCC)

HSP 1 Score: 162 bits (409), Expect = 1.870e-50
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MSERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 240
            MSERKAVIKNADMSEDMQQDAVDCA+QALEKYNIEKDIAAFIKKEFDKK+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:    1 MSERKAVIKNADMSEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
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BLAST of mRNA_P-fluviatile_contig10.893.1 vs. uniprot
Match: W4HCB9_9STRA (Dynein light chain n=26 Tax=Oomycota TaxID=4762 RepID=W4HCB9_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.780e-50
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    1 MSERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 240
            MSERKAVIKNADM EDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKK+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:    1 MSERKAVIKNADMHEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
[Close]
BLAST of mRNA_P-fluviatile_contig10.893.1 vs. uniprot
Match: C1ML17_MICPC (Dynein light chain n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1ML17_MICPC)

HSP 1 Score: 160 bits (406), Expect = 5.370e-50
Identity = 77/80 (96.25%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MSERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 240
            MSERKAVIKNADMSED+QQDAVDCA+QALEKYNIEKDIAAFIKKEFDKK+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:    1 MSERKAVIKNADMSEDLQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
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BLAST of mRNA_P-fluviatile_contig10.893.1 vs. uniprot
Match: A0A7L9QEK2_9CHLO (Dynein light chain n=1 Tax=Trebouxia sp. TR9 TaxID=1825957 RepID=A0A7L9QEK2_9CHLO)

HSP 1 Score: 161 bits (407), Expect = 7.440e-50
Identity = 76/80 (95.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MSERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 240
            MSERKAVIKNADMSEDMQQDA+DCA+QALEKYN+EKDIAAFIKKEFDKK+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:   23 MSERKAVIKNADMSEDMQQDAIDCATQALEKYNVEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 102
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BLAST of mRNA_P-fluviatile_contig10.893.1 vs. uniprot
Match: A0A485LAB0_9STRA (Dynein light chain n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAB0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.080e-49
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    1 MSERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 240
            MSERKAVIKNADM EDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKK+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:   35 MSERKAVIKNADMHEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 114
[Close]
BLAST of mRNA_P-fluviatile_contig10.893.1 vs. uniprot
Match: A0A401QGE4_SCYTO (Dynein light chain n=3 Tax=Chondrichthyes TaxID=7777 RepID=A0A401QGE4_SCYTO)

HSP 1 Score: 160 bits (404), Expect = 1.080e-49
Identity = 76/80 (95.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MSERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 240
            MS+RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAAFIKKEFDKK+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
[Close]
BLAST of mRNA_P-fluviatile_contig10.893.1 vs. uniprot
Match: M4BH12_HYAAE (Dynein light chain n=5 Tax=Eukaryota TaxID=2759 RepID=M4BH12_HYAAE)

HSP 1 Score: 160 bits (404), Expect = 1.080e-49
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    1 MSERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 240
            M+ERKAVIKNADM EDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKK+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:    1 MAERKAVIKNADMHEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
[Close]
BLAST of mRNA_P-fluviatile_contig10.893.1 vs. uniprot
Match: A0A6A3E1H5_9STRA (Dynein light chain n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3E1H5_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.390e-49
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    1 MSERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 240
            MSERKAVIKNADM EDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKK+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:   43 MSERKAVIKNADMHEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 122
[Close]
BLAST of mRNA_P-fluviatile_contig10.893.1 vs. uniprot
Match: T1FZC8_HELRO (Dynein light chain n=36 Tax=Eukaryota TaxID=2759 RepID=T1FZC8_HELRO)

HSP 1 Score: 159 bits (403), Expect = 1.540e-49
Identity = 76/80 (95.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MSERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 240
            MS+RKAVIKNADMSEDMQQDAVDCA+QALEKYNIEKDIAA+IKKEFDKK+NPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2C9K100_BIOGL1.870e-5097.50Dynein light chain n=4 Tax=Euthyneura TaxID=216307... [more]
C1FDC9_MICCC1.870e-5097.50Dynein light chain n=2 Tax=Eukaryota TaxID=2759 Re... [more]
W4HCB9_9STRA3.780e-5097.50Dynein light chain n=26 Tax=Oomycota TaxID=4762 Re... [more]
C1ML17_MICPC5.370e-5096.25Dynein light chain n=2 Tax=Micromonas pusilla TaxI... [more]
A0A7L9QEK2_9CHLO7.440e-5095.00Dynein light chain n=1 Tax=Trebouxia sp. TR9 TaxID... [more]
A0A485LAB0_9STRA1.080e-4997.50Dynein light chain n=1 Tax=Aphanomyces stellatus T... [more]
A0A401QGE4_SCYTO1.080e-4995.00Dynein light chain n=3 Tax=Chondrichthyes TaxID=77... [more]
M4BH12_HYAAE1.080e-4996.25Dynein light chain n=5 Tax=Eukaryota TaxID=2759 Re... [more]
A0A6A3E1H5_9STRA1.390e-4997.50Dynein light chain n=2 Tax=Phytophthora TaxID=4783... [more]
T1FZC8_HELRO1.540e-4995.00Dynein light chain n=36 Tax=Eukaryota TaxID=2759 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:3329001..3330057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score161.4
Seed ortholog evalue1.8e-37
Seed eggNOG ortholog296587.XP_002507507.1
Preferred nameODA-LC8
KEGG koko:K10418
KEGG Pathwayko04962,map04962
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0010970,GO:0015629,GO:0015630,GO:0016043,GO:0016459,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0030705,GO:0032781,GO:0032838,GO:0032991,GO:0042802,GO:0042803,GO:0042995,GO:0043085,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043462,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0045505,GO:0046907,GO:0046982,GO:0046983,GO:0050790,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051959,GO:0060271,GO:0065007,GO:0065009,GO:0070925,GO:0071840,GO:0097014,GO:0097110,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494,GO:2000574,GO:2000576,GO:2000580,GO:2000582
EggNOG free text desc.outer dynein arm light chain 8
EggNOG OGs34M71@3041,37VK3@33090,KOG3430@1,KOG3430@2759
COG Functional cat.Z
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative: flagellar outer dynein arm light chain 6
Ec32 orthologEc-03_003210.1
Exons2
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815409.772098-CDS-P-fluviatile_contig10:3329000..33291081622815409.772098-CDS-P-fluviatile_contig10:3329000..3329108Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3329001..3329108 +
1693561774.0693035-CDS-P-fluviatile_contig10:3329000..33291081693561774.0693035-CDS-P-fluviatile_contig10:3329000..3329108Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3329001..3329108 +
1622815409.781986-CDS-P-fluviatile_contig10:3329925..33300571622815409.781986-CDS-P-fluviatile_contig10:3329925..3330057Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3329926..3330057 +
1693561774.0882022-CDS-P-fluviatile_contig10:3329925..33300571693561774.0882022-CDS-P-fluviatile_contig10:3329925..3330057Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3329926..3330057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.893.1prot_P-fluviatile_contig10.893.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 3329001..3330057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.893.1

>prot_P-fluviatile_contig10.893.1 ID=prot_P-fluviatile_contig10.893.1|Name=mRNA_P-fluviatile_contig10.893.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=80bp
MSERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKH
NPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
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mRNA from alignment at P-fluviatile_contig10:3329001..3330057+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.893.1 ID=mRNA_P-fluviatile_contig10.893.1|Name=mRNA_P-fluviatile_contig10.893.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1057bp|location=Sequence derived from alignment at P-fluviatile_contig10:3329001..3330057+ (Porterinema fluviatile SAG_2381)
ATGTCCGAGCGGAAAGCCGTTATCAAGAATGCCGACATGTCCGAGGACAT
GCAACAGGACGCGGTAGACTGCGCGTCTCAGGCCTTGGAAAAGTACAACA
TTGAGAAGGTGAGTAAAGTATCGCCAACCCGAGCCGAGTAAAGCGAAGCC
AACCCGACCTTTGGCAACCATAGCCAAATCCCGTCTCGAGAGATCACCTG
GACTCATGGCCCAGGCGTAGCCACAATTTTTTTGAGTCAAACGGATGGAT
CTGTTTGGAGGAAAGTTCAGTACGCCCCGCTGGACTCCCTGCGTCGAGGT
GAAAGAGTTTCCTGTCAAATGTGTTGGGATGGAAGTTTGAATTGAAAGCA
AACATTCACCGGGGCCGAGTGATGAGTGGCAGCAGGTTGTAGCTGTTGCT
CGTATGCGCCACTTCATTGTGCAAGGGAGTAACGTTCGCCCCTAGGCAAG
TTTCCTCAATGTTCATCTTCCCGTCGCCGGCTTAGCGTGCGGGTCACGAA
GCAACCACACGAGGTCTTCCCGACTGGAGTCTGAAATTGACGTCCTTGTT
CGGTGTTTTGGCTTTGAAAAATGCATCGGGACTAGAGCGTGTACGTGTTG
GTACTCCTCGTGTCGATCCACGGACAGCCAGGAGGTTGGATCGTTCTTCC
GTGCACAATGTGGCACTCTCTTCGCCAAGATAGCCTGAGTTCGTCAAAAT
GTTCGACTCAAGCCGGATTTTCCGGCGAAGGGATCTACTTTTCTTCTTTT
CAAAGACTACGGCGCCGCCATGCGCCACCTGATGCTGGTGCACTTCCTCA
CTACGGTGCTGCACTGCACAACATGCCCTCGCTTCGCACCCGTGCTTCGA
TCCCGGTTACTCATCGAGTCCCATTTACCATATACTTCTTCCCCTGTTGT
CGCATCTCGATTTTTGGATCCACAGGACATTGCCGCCTTTATTAAGAAGG
AGTTTGACAAGAAGCACAACCCAACTTGGCACTGCATCGTGGGCCGCAAC
TTTGGCTCCTACGTGACCCACGAGACGAAACACTTCATCTACTTTTACTT
GGGGCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:3329001..3330057+

>mRNA_P-fluviatile_contig10.893.1 ID=mRNA_P-fluviatile_contig10.893.1|Name=mRNA_P-fluviatile_contig10.893.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=480bp|location=Sequence derived from alignment at P-fluviatile_contig10:3329001..3330057+ (Porterinema fluviatile SAG_2381)
ATGTCCGAGCGGAAAGCCGTTATCAAGAATGCCGACATGTCCGAGGACAT
GCAACAGGACGCGGTAGACTGCGCGTCTCAGGCCTTGGAAAAGTACAACA
TTGAGAAGATGTCCGAGCGGAAAGCCGTTATCAAGAATGCCGACATGTCC
GAGGACATGCAACAGGACGCGGTAGACTGCGCGTCTCAGGCCTTGGAAAA
GTACAACATTGAGAAGGACATTGCCGCCTTTATTAAGAAGGAGTTTGACA
AGAAGCACAACCCAACTTGGCACTGCATCGTGGGCCGCAACTTTGGCTCC
TACGTGACCCACGAGACGAAACACTTCATCTACTTTTACTTGGGGCAGGA
CATTGCCGCCTTTATTAAGAAGGAGTTTGACAAGAAGCACAACCCAACTT
GGCACTGCATCGTGGGCCGCAACTTTGGCTCCTACGTGACCCACGAGACG
AAACACTTCATCTACTTTTACTTGGGGCAG
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