mRNA_P-fluviatile_contig10.887.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.887.1
Unique NamemRNA_P-fluviatile_contig10.887.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig10.887.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 7.260e-30
Identity = 77/99 (77.78%), Postives = 80/99 (80.81%), Query Frame = 3 
Query:  126 DIRGVERKIEDAEEETAEVVKKIDDIEAAFAGGSKYLGMTDPEALLKQLRRKEEXXXXXXXXXX------------DLLLKKEDRLSSIEQLCANNAPA 386
            DIRGVERK EDAE+ETAEVVKKIDDIEAA AGGS+YLGMTDPEALLKQL RKEE XXXXXXXXX            +LLLKKEDR S IEQL ANNAPA
Sbjct:   40 DIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPA 138
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BLAST of mRNA_P-fluviatile_contig10.887.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.170e-25
Identity = 72/104 (69.23%), Postives = 77/104 (74.04%), Query Frame = 3 
Query:  126 DIRGVERKIEDAEEETAEVVKKIDDIEAAFAGGSKYLGMTDPEALLKQLRRKEEXXXXXXXXXX-----------------DLLLKKEDRLSSIEQLCANNAPA 386
            +IRGVERKIEDAEEETAEVVKKIDDIEAA AGG++YLGMTDPEALLKQL +   XXXXXXXXXX                 +LLLK EDRLS  EQ  ANNAPA
Sbjct:   47 EIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQLEQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
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BLAST of mRNA_P-fluviatile_contig10.887.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.370e-24
Identity = 61/88 (69.32%), Postives = 63/88 (71.59%), Query Frame = 3 
Query:  159 AEEETAEVVKKIDDIEAAFAGGSKYLGMTDPEALLKQLRRKEEXXXXXXXXXXD----------LLLKKEDRLSSIEQLCANNAPAGI 392
            AEEETAEVVKKID IEAA AGGSKYLGMTDPEALLKQL RKEE         X           +LLKKEDRLS IEQL ANNAPAG+
Sbjct:   58 AEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAGV 145
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BLAST of mRNA_P-fluviatile_contig10.887.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 9.480e-10
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 MTSLSAMSEGDEEEGGGDHDAQEAADGSPAVDEIRAVQ 114
            MTSLSAMSEG EEEGGGDH A+EAADGSPA DEIRAVQ
Sbjct:   76 MTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQ 113
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BLAST of mRNA_P-fluviatile_contig10.887.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 3.430e-9
Identity = 50/71 (70.42%), Postives = 53/71 (74.65%), Query Frame = 3 
Query:  189 KIDDIEAA-FAGGSKYLGMTDPEALLKQLRR---KEEXXXXXXXXXXDLLLKKEDRLSSIEQLCANNAPAG 389
            KIDD+EAA  AGGS YLGMTDPEALLK+  R      XXXXXXXXXX  +L KE RL SIEQ  ANNAPAG
Sbjct:   68 KIDDVEAATIAGGSGYLGMTDPEALLKEKERLGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAG 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8Q1_ECTSI7.260e-3077.78Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI2.170e-2569.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI1.370e-2469.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM56_ECTSI9.480e-1089.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI3.430e-970.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:3280769..3281163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size395
Cds size156
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815408.626666-UTR-P-fluviatile_contig10:3280768..32810071622815408.626666-UTR-P-fluviatile_contig10:3280768..3281007Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3280769..3281007 +
1693561773.7617505-UTR-P-fluviatile_contig10:3280768..32810071693561773.7617505-UTR-P-fluviatile_contig10:3280768..3281007Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3280769..3281007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815408.6377163-CDS-P-fluviatile_contig10:3281007..32811631622815408.6377163-CDS-P-fluviatile_contig10:3281007..3281163Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3281008..3281163 +
1693561773.770341-CDS-P-fluviatile_contig10:3281007..32811631693561773.770341-CDS-P-fluviatile_contig10:3281007..3281163Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3281008..3281163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.887.1prot_P-fluviatile_contig10.887.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 3281008..3281163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.887.1

>prot_P-fluviatile_contig10.887.1 ID=prot_P-fluviatile_contig10.887.1|Name=mRNA_P-fluviatile_contig10.887.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=52bp
MTDPEALLKQLRRKEEQLRRKEEQLRDLLLKKEDRLSSIEQLCANNAPAG
I*
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mRNA from alignment at P-fluviatile_contig10:3280769..3281163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.887.1 ID=mRNA_P-fluviatile_contig10.887.1|Name=mRNA_P-fluviatile_contig10.887.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=395bp|location=Sequence derived from alignment at P-fluviatile_contig10:3280769..3281163+ (Porterinema fluviatile SAG_2381)
ATGACGAGCTTGAGCGCGATGAGCGAGGGCGACGAAGAGGAGGGGGGCGG
CGATCATGATGCGCAAGAAGCTGCCGATGGCAGTCCGGCGGTGGACGAGA
TCCGTGCAGTCCAGGATGAGATCATGATATCCGTGGTGTAGAGCGAAAGA
TCGAGGATGCAGAGGAGGAGACGGCAGAGGTTGTCAAGAAGATTGATGAT
ATTGAGGCTGCTTTTGCGGGGGGCTCCAAGTACCTCGGAATGACCGACCC
CGAAGCCCTCTTGAAGCAACTACGCAGGAAGGAGGAGCAACTACGCAGGA
AGGAGGAGCAGCTCCGCGACCTCCTTTTGAAGAAGGAGGACCGGCTCTCC
AGCATTGAGCAGCTCTGTGCCAACAACGCCCCCGCAGGTATATAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:3280769..3281163+

>mRNA_P-fluviatile_contig10.887.1 ID=mRNA_P-fluviatile_contig10.887.1|Name=mRNA_P-fluviatile_contig10.887.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=312bp|location=Sequence derived from alignment at P-fluviatile_contig10:3280769..3281163+ (Porterinema fluviatile SAG_2381)
ATGACCGACCCCGAAGCCCTCTTGAAGCAACTACGCAGGAAGGAGGAGCA
ACTACGCAGGAAGGAGGAGCAGCTCCGCGACCTCCTTTTGAAGAAGGAGG
ACCGGCTCTCCAGCATTGAGCAGCTCTGTGCCAACAACGCCCCCGCAGGT
ATATAGATGACCGACCCCGAAGCCCTCTTGAAGCAACTACGCAGGAAGGA
GGAGCAACTACGCAGGAAGGAGGAGCAGCTCCGCGACCTCCTTTTGAAGA
AGGAGGACCGGCTCTCCAGCATTGAGCAGCTCTGTGCCAACAACGCCCCC
GCAGGTATATAG
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