mRNA_P-fluviatile_contig10.884.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.884.1
Unique NamemRNA_P-fluviatile_contig10.884.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig10.884.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.890e-27
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 YRWNLRQSISNRGLSEAVGGFYDQTVLGSVQRMTSQLFGKSKYPEWLPTSAYDDTVKRSGFVRSIFSED 207
            YRWNLRQS+ NRGL EAVGGFYDQ +L ++QRMTS+L+GK+KY +WLPTSAY DT +RSGFVRSIF  +
Sbjct:  494 YRWNLRQSMKNRGLDEAVGGFYDQPILEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSE 562
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BLAST of mRNA_P-fluviatile_contig10.884.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.100e-27
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 YRWNLRQSISNRGLSEAVGGFYDQTVLGSVQRMTSQLFGKSKYPEWLPTSAYDDTVKRSGFVRSIF 198
            YRWNLRQS+ NRGL EAVGGFYDQ +L ++QRMTS+L+GK+KY +WLPTSAY DT +RSGFVRSIF
Sbjct:  319 YRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIF 384
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BLAST of mRNA_P-fluviatile_contig10.884.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 5.480e-27
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 YRWNLRQSISNRGLSEAVGGFYDQTVLGSVQRMTSQLFGKSKYPEWLPTSAYDDTVKRSGFVRSIF 198
            YRWNLRQS+ NRGL EAVGGFYDQ +L ++QRMTS+L+GK+KY +WLPTSAY DT +RSGFVRSIF
Sbjct:  892 YRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIF 957
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KEU8_9PHAE1.890e-2772.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD89_9PHAE3.100e-2775.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE5.480e-2775.763'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:3274398..3274832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815408.371317-CDS-P-fluviatile_contig10:3274398..32745871622815408.371317-CDS-P-fluviatile_contig10:3274398..3274587Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3274399..3274587 -
1693561773.5868826-CDS-P-fluviatile_contig10:3274398..32745871693561773.5868826-CDS-P-fluviatile_contig10:3274398..3274587Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3274399..3274587 -
1622815408.386263-CDS-P-fluviatile_contig10:3274739..32748321622815408.386263-CDS-P-fluviatile_contig10:3274739..3274832Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3274740..3274832 -
1693561773.5979404-CDS-P-fluviatile_contig10:3274739..32748321693561773.5979404-CDS-P-fluviatile_contig10:3274739..3274832Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3274740..3274832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.884.1prot_P-fluviatile_contig10.884.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 3274399..3274832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.884.1

>prot_P-fluviatile_contig10.884.1 ID=prot_P-fluviatile_contig10.884.1|Name=mRNA_P-fluviatile_contig10.884.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=94bp
YRWNLRQSISNRGLSEAVGGFYDQTVLGSVQRMTSQLFGKSKYPEWLPTS
AYDDTVKRSGFVRSIFSEDGELMPEIRRRSAAAWTRIQRYKREL
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mRNA from alignment at P-fluviatile_contig10:3274398..3274832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.884.1 ID=mRNA_P-fluviatile_contig10.884.1|Name=mRNA_P-fluviatile_contig10.884.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=435bp|location=Sequence derived from alignment at P-fluviatile_contig10:3274398..3274832- (Porterinema fluviatile SAG_2381)
TACAGGTGGAACCTACGCCAAAGCATCAGCAACCGCGGCCTTAGTGAGGC
CGTTGGCGGATTCTACGACCAAACGGTGCTCGGGTCGGTTCAGGTGCGAT
ATTTGACAGTGTAAACTTCAGTTTCAGTTCCAAGCACAAGCTGTTGCTGT
TTCCGGGGCCGAACCTCACGAAATTGATTTGTCAGCCCCAGCTAACGCTC
TCTTCACCCGTCGCGTCTACTGTCCTGTTCGGTTTTCGTCGACAGAGGAT
GACTTCCCAGCTGTTCGGGAAGTCTAAATACCCAGAATGGCTGCCGACAA
GCGCATACGACGACACGGTAAAGCGCAGTGGATTTGTCCGGAGTATCTTT
TCCGAAGACGGAGAGCTTATGCCCGAGATCCGCCGGAGGAGTGCAGCCGC
CTGGACGCGCATTCAGAGGTACAAACGCGAGCTCT
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:3274398..3274832-

>mRNA_P-fluviatile_contig10.884.1 ID=mRNA_P-fluviatile_contig10.884.1|Name=mRNA_P-fluviatile_contig10.884.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=564bp|location=Sequence derived from alignment at P-fluviatile_contig10:3274398..3274832- (Porterinema fluviatile SAG_2381)
TACAGGTGGAACCTACGCCAAAGCATCAGCAACCGCGGCCTTAGTGAGGC
CGTTGGCGGATTCTACGACCAAACGGTGCTCGGGTCGGTTCAGTACAGGT
GGAACCTACGCCAAAGCATCAGCAACCGCGGCCTTAGTGAGGCCGTTGGC
GGATTCTACGACCAAACGGTGCTCGGGTCGGTTCAGAGGATGACTTCCCA
GCTGTTCGGGAAGTCTAAATACCCAGAATGGCTGCCGACAAGCGCATACG
ACGACACGGTAAAGCGCAGTGGATTTGTCCGGAGTATCTTTTCCGAAGAC
GGAGAGCTTATGCCCGAGATCCGCCGGAGGAGTGCAGCCGCCTGGACGCG
CATTCAGAGGTACAAACGCGAGCTCAGGATGACTTCCCAGCTGTTCGGGA
AGTCTAAATACCCAGAATGGCTGCCGACAAGCGCATACGACGACACGGTA
AAGCGCAGTGGATTTGTCCGGAGTATCTTTTCCGAAGACGGAGAGCTTAT
GCCCGAGATCCGCCGGAGGAGTGCAGCCGCCTGGACGCGCATTCAGAGGT
ACAAACGCGAGCTC
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