mRNA_P-fluviatile_contig10.880.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.880.1
Unique NamemRNA_P-fluviatile_contig10.880.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:3239787..3240007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size221
Cds size150
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815408.075094-UTR-P-fluviatile_contig10:3239786..32398571622815408.075094-UTR-P-fluviatile_contig10:3239786..3239857Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3239787..3239857 +
1693561773.4992378-UTR-P-fluviatile_contig10:3239786..32398571693561773.4992378-UTR-P-fluviatile_contig10:3239786..3239857Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3239787..3239857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815408.0862687-CDS-P-fluviatile_contig10:3239857..32400071622815408.0862687-CDS-P-fluviatile_contig10:3239857..3240007Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3239858..3240007 +
1693561773.5087216-CDS-P-fluviatile_contig10:3239857..32400071693561773.5087216-CDS-P-fluviatile_contig10:3239857..3240007Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3239858..3240007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.880.1prot_P-fluviatile_contig10.880.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 3239858..3240007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.880.1

>prot_P-fluviatile_contig10.880.1 ID=prot_P-fluviatile_contig10.880.1|Name=mRNA_P-fluviatile_contig10.880.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=50bp
MGAFALLFDVCSLAFTSQFGHHFKRESRAALSGSADGQCIDVCRVILRE*
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mRNA from alignment at P-fluviatile_contig10:3239787..3240007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.880.1 ID=mRNA_P-fluviatile_contig10.880.1|Name=mRNA_P-fluviatile_contig10.880.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=221bp|location=Sequence derived from alignment at P-fluviatile_contig10:3239787..3240007+ (Porterinema fluviatile SAG_2381)
ATGATCGTGGGAAGCTCCCCTAAGAGTCTCAACACCGTCGCGTGCCATGC
ACTAGCCAGCAAACGCGCCCTATGGGTGCATTCGCGCTCCTTTTTGACGT
ATGTTCACTAGCCTTCACGTCACAATTTGGACACCACTTCAAGCGTGAAA
GCCGCGCCGCTCTCTCTGGAAGCGCCGACGGTCAATGCATTGACGTGTGT
CGTGTAATATTACGTGAGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:3239787..3240007+

>mRNA_P-fluviatile_contig10.880.1 ID=mRNA_P-fluviatile_contig10.880.1|Name=mRNA_P-fluviatile_contig10.880.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=300bp|location=Sequence derived from alignment at P-fluviatile_contig10:3239787..3240007+ (Porterinema fluviatile SAG_2381)
ATGGGTGCATTCGCGCTCCTTTTTGACGTATGTTCACTAGCCTTCACGTC
ACAATTTGGACACCACTTCAAGCGTGAAAGCCGCGCCGCTCTCTCTGGAA
GCGCCGACGGTCAATGCATTGACGTGTGTCGTGTAATATTACGTGAGTGA
ATGGGTGCATTCGCGCTCCTTTTTGACGTATGTTCACTAGCCTTCACGTC
ACAATTTGGACACCACTTCAAGCGTGAAAGCCGCGCCGCTCTCTCTGGAA
GCGCCGACGGTCAATGCATTGACGTGTGTCGTGTAATATTACGTGAGTGA
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