mRNA_P-fluviatile_contig10.868.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.868.1
Unique NamemRNA_P-fluviatile_contig10.868.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig10.868.1 vs. uniprot
Match: A0A6H5JAM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAM5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 9.290e-22
Identity = 54/80 (67.50%), Postives = 58/80 (72.50%), Query Frame = -3 
Query:  167 IVRPAARIDAWPGCRHHLFEKTGLAMTAGG*LNDRNPPWGVVGAPKIVDGDTSIDEEMPDRDGEVGDSDGGRSGGESSSD 406
            I R  AR+DA PG RH LFEKTGLAMTA G L+DR  P GVVGA   +DG TS DEEMPD+D EVGD DGG   GESS D
Sbjct:  415 IARAVARMDARPGYRHRLFEKTGLAMTADGSLDDRITPEGVVGAYNFMDGGTSSDEEMPDQDDEVGDDDGGAGAGESSCD 494
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BLAST of mRNA_P-fluviatile_contig10.868.1 vs. uniprot
Match: A0A6H5K5D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.060e-21
Identity = 53/90 (58.89%), Postives = 60/90 (66.67%), Query Frame = -3 
Query:  155 IVRPAARIDAWPGCRHHLFEKTGLAMTAGG*LNDRNPPWGVVGAPKIVDGDTSIDEEMPDRDGEVGDSDGGRSGGESS------SDDHGK 406
            + R  AR+DA PG RH LFEKTGLAM A G L+DR  P GVVGA   +DG TS DEEMPD+D EVGD   G  GG+SS      +DD GK
Sbjct:   46 VARAVARMDARPGYRHRLFEKTGLAMMADGSLDDRITPEGVVGAYNFMDGGTSSDEEMPDQDDEVGDDYRGAGGGKSSFNSDASADDDGK 135
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BLAST of mRNA_P-fluviatile_contig10.868.1 vs. uniprot
Match: A0A6H5KIH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIH7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.610e-16
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = -3 
Query:  212 IVRPAARIDAWPGCRHHLFEKTGLAMTAGG*LNDRNPPWGVVGAPKIVDGDTSIDEEMPDRDGEV 406
            I R  AR+DA PG RH LFEKTGLAMTA G L+DR  P GVVGA   +DG TS DEEMPD+D EV
Sbjct:  240 IARAVARMDARPGYRHRLFEKTGLAMTADGSLDDRITPEGVVGAYNFMDGGTSSDEEMPDQDDEV 304
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BLAST of mRNA_P-fluviatile_contig10.868.1 vs. uniprot
Match: A0A6H5JZQ9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.930e-15
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = -3 
Query:  212 IVRPAARIDAWPGCRHHLFEKTGLAMTAGG*LNDRNPPWGVVGAPKIVDGDTSIDEEMPDRDGEV 406
            I R  A++DA PG RH LFEKTGLAMTA G L+DR  P GVVGA   +DG TS DEEMPD+D EV
Sbjct:  683 IARAVAQMDARPGYRHGLFEKTGLAMTADGSLDDRVTPEGVVGAYNFMDGGTSSDEEMPDQDEEV 747
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BLAST of mRNA_P-fluviatile_contig10.868.1 vs. uniprot
Match: A0A6H5JLC5_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC5_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.480e-14
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = -3 
Query:  233 IVRPAARIDAWPGCRHHLFEKTGLAMTAGG*LNDRNPPWGVVGAPKIVDGDTSIDEEM 406
            I R  AR+D WPG RH LFEKTGLAMTA G L+DR  P GVVGA   +DG TS DEEM
Sbjct:  404 IARAVARMDRWPGYRHRLFEKTGLAMTADGSLDDRITPEGVVGAYNFMDGGTSSDEEM 461
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BLAST of mRNA_P-fluviatile_contig10.868.1 vs. uniprot
Match: A0A6H5LMB4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMB4_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.650e-11
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = -3 
Query:  224 IVRPAARIDAWPGCRHHLFEKTGLAMTAGG*LNDRNPPWGVVGAPKIVDGDTSIDEEMPDR 406
            I R  AR+DA PG RH L EKTGLAMTA G L+DR+ P  VV     +DG TS DEE+PD+
Sbjct:  473 IARAVARMDARPGYRHRLLEKTGLAMTADGSLDDRSTPEDVVRGYNFMDGSTSSDEEVPDQ 533
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BLAST of mRNA_P-fluviatile_contig10.868.1 vs. uniprot
Match: A0A6H5L6G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6G2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.290e-9
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = -3 
Query:  248 IVRPAARIDAWPGCRHHLFEKTGLAMTAGG*LNDRNPPWGVVGAPKIVDGDTS 406
            + R  AR+DA PG RH LFEKT LAMTA G L+DR  P GVVGA   +DG TS
Sbjct:  254 VARAVARMDARPGYRHRLFEKTVLAMTADGSLDDRITPDGVVGAYNFMDGGTS 306
[Close]
BLAST of mRNA_P-fluviatile_contig10.868.1 vs. uniprot
Match: A0A6H5JW43_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW43_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 8.330e-9
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = -3 
Query:  275 IVRPAARIDAWPGCRHHLFEKTGLAMTAGG*LNDRNPPWGVVGA 406
            I R  AR+DA PG RH LFEKTGLAMTA G L+DR  P GVVGA
Sbjct:  651 IARAVARVDARPGYRHRLFEKTGLAMTADGSLDDRITPEGVVGA 694
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JAM5_9PHAE9.290e-2267.50DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K5D4_9PHAE8.060e-2158.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIH7_9PHAE1.610e-1667.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZQ9_9PHAE3.930e-1566.15DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JLC5_9PHAE2.480e-1467.24HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5LMB4_9PHAE1.650e-1159.02HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5L6G2_9PHAE2.290e-962.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW43_9PHAE8.330e-970.45C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:3085210..3085617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.2755294-CDS-P-fluviatile_contig10:3085209..30856171622815361.2755294-CDS-P-fluviatile_contig10:3085209..3085617Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3085210..3085617 +
1693561605.7132478-CDS-P-fluviatile_contig10:3085209..30856171693561605.7132478-CDS-P-fluviatile_contig10:3085209..3085617Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3085210..3085617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.868.1prot_P-fluviatile_contig10.868.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 3085210..3085617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.868.1

>prot_P-fluviatile_contig10.868.1 ID=prot_P-fluviatile_contig10.868.1|Name=mRNA_P-fluviatile_contig10.868.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=136bp
SSPKRYCKTKKKNAQKEGAHKTGALSNTTAAPRCVQVEGGRRNESEPEKS
KTYHDRRSLIRHRSAPRRCRRPHHPCRASPRRCSCPRPRFLGPQLRPTEG
CGRSTTRLPSLLTPSSQKGDGGTQAKRRFARPALR*
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mRNA from alignment at P-fluviatile_contig10:3085210..3085617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.868.1 ID=mRNA_P-fluviatile_contig10.868.1|Name=mRNA_P-fluviatile_contig10.868.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=408bp|location=Sequence derived from alignment at P-fluviatile_contig10:3085210..3085617+ (Porterinema fluviatile SAG_2381)
TCATCACCTAAAAGATACTGCAAAACAAAAAAAAAAAACGCCCAAAAGGA
AGGCGCGCATAAGACAGGCGCATTGAGCAATACCACAGCCGCACCCCGGT
GCGTTCAAGTTGAAGGGGGAAGGCGAAATGAGAGCGAACCTGAAAAATCC
AAAACTTACCATGATCGTCGGAGCTTGATTCGCCACCGCTCCGCCCCCCG
TCGCTGTCGCCGACCTCACCATCCCTGTCGGGCATCTCCTCGTCGATGCT
CGTGTCCCCGTCCACGATTTTTGGGGCCCCAACTACGCCCCACGGAGGGT
TGCGGTCGTTCAACTACCCGCCTGCCGTCATTGCTAACCCCGTCTTCTCA
AAAAGGTGATGGCGGCACCCAGGCCAAGCGTCGATTCGCGCGGCCGGCCT
TACGATGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:3085210..3085617+

>mRNA_P-fluviatile_contig10.868.1 ID=mRNA_P-fluviatile_contig10.868.1|Name=mRNA_P-fluviatile_contig10.868.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=816bp|location=Sequence derived from alignment at P-fluviatile_contig10:3085210..3085617+ (Porterinema fluviatile SAG_2381)
TCATCACCTAAAAGATACTGCAAAACAAAAAAAAAAAACGCCCAAAAGGA
AGGCGCGCATAAGACAGGCGCATTGAGCAATACCACAGCCGCACCCCGGT
GCGTTCAAGTTGAAGGGGGAAGGCGAAATGAGAGCGAACCTGAAAAATCC
AAAACTTACCATGATCGTCGGAGCTTGATTCGCCACCGCTCCGCCCCCCG
TCGCTGTCGCCGACCTCACCATCCCTGTCGGGCATCTCCTCGTCGATGCT
CGTGTCCCCGTCCACGATTTTTGGGGCCCCAACTACGCCCCACGGAGGGT
TGCGGTCGTTCAACTACCCGCCTGCCGTCATTGCTAACCCCGTCTTCTCA
AAAAGGTGATGGCGGCACCCAGGCCAAGCGTCGATTCGCGCGGCCGGCCT
TACGATGATCATCACCTAAAAGATACTGCAAAACAAAAAAAAAAAACGCC
CAAAAGGAAGGCGCGCATAAGACAGGCGCATTGAGCAATACCACAGCCGC
ACCCCGGTGCGTTCAAGTTGAAGGGGGAAGGCGAAATGAGAGCGAACCTG
AAAAATCCAAAACTTACCATGATCGTCGGAGCTTGATTCGCCACCGCTCC
GCCCCCCGTCGCTGTCGCCGACCTCACCATCCCTGTCGGGCATCTCCTCG
TCGATGCTCGTGTCCCCGTCCACGATTTTTGGGGCCCCAACTACGCCCCA
CGGAGGGTTGCGGTCGTTCAACTACCCGCCTGCCGTCATTGCTAACCCCG
TCTTCTCAAAAAGGTGATGGCGGCACCCAGGCCAAGCGTCGATTCGCGCG
GCCGGCCTTACGATGA
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