mRNA_P-fluviatile_contig10.860.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.860.1
Unique NamemRNA_P-fluviatile_contig10.860.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig10.860.1 vs. uniprot
Match: W4GP40_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GP40_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 8.600e-17
Identity = 68/184 (36.96%), Postives = 93/184 (50.54%), Query Frame = 2
Query:    2 LGWVRTTPGGSRVVHDFEDFVHVDER*RKGRSSSCTTMRNPLFA--------RSRARGLSQTKVVLLAAVVRPHHTLATNA-LSTATSACGPSQRRSAQRNSRNRTTGTLVTMV*VEVTKEIHMAKLIDNVIPAIKKKWRAGTRHRIIFTQQDSAKPCRAIEDQDLLEACYSDGFDTKLINPPP 526
            L W     G   +VHD  D+VHVDE+         T ++  L+         RS       TKV+ L+AV RP     TN            +Q   AQR+SRNR +GT+VT V   VT++ +   LIDNVIPAIK KW      RI+  QQD+A+P   + D+ +  AC SDG+  +++  PP
Sbjct:   69 LKWAFERLGPDLMVHDMMDYVHVDEK-----WFYMTRVKKTLYLLPGEEPPHRSTKSKRFITKVMFLSAVARPRWNYNTNEWFDGRIGTWHFTQTVPAQRSSRNRPSGTMVT-VPCTVTRDTYRDMLIDNVIPAIKAKWPNDKAARILL-QQDNARPHVPLSDERVAAACASDGWAIEVVCQPP 245          
BLAST of mRNA_P-fluviatile_contig10.860.1 vs. uniprot
Match: UPI000E6FC7BC (uncharacterized protein LOC113359119 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FC7BC)

HSP 1 Score: 82.0 bits (201), Expect = 1.940e-15
Identity = 51/123 (41.46%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  161 TKVVLLAAVVRPHHTLATNALSTATSACGP-SQRRSAQRNSRNRTTGTLVTMV*VEVTKEIHMAKLIDNVIPAIKKKWRAGTRHRIIFTQQDSAKPCRAIEDQDLLEACYSDGFDTKLINPPP 526
            TKV+ LA V RP +  A N   +      P + +  AQRNS+NRT GT+ T   + VTK++  + LI+ V+PAI+ KW   +    IF QQD+A+P     DQ+ LE    DGFD +L   PP
Sbjct:   28 TKVMFLAVVARPRYDSANNEEFSGKIGIFPFTFQEPAQRNSKNRTAGTMETKAILSVTKDVIRSCLINKVLPAIRSKWPRSSNMEPIFIQQDNARPHINPNDQEFLEDASKDGFDIRLSFQPP 150          
BLAST of mRNA_P-fluviatile_contig10.860.1 vs. uniprot
Match: UPI000E6FD0CA (uncharacterized protein LOC113359240 n=2 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FD0CA)

HSP 1 Score: 80.5 bits (197), Expect = 1.520e-14
Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  161 TKVVLLAAVVRPHHTLATNA-LSTATSACGPSQRRSAQRNSRNRTTGTLVTMV*VEVTKEIHMAKLIDNVIPAIKKKWRAGTRHRIIFTQQDSAKPCRAIEDQDLLEACYSDGFDTKLINPPP 526
            TKV+ LA V RP +  A N   S        + +  AQRNS+NRT GT+ T   + VTK++    LI+ V PAI+ KW   +    IF QQD+AKP     DQ+ LE    DGFD +L   PP
Sbjct:  144 TKVMFLAVVARPRYDSANNEEFSGKIGIFSFTFQEPAQRNSKNRTAGTMETKAILSVTKDVICLCLINKVFPAIRSKWPRSSNMEPIFIQQDNAKPHINPNDQEFLEDASKDGFDIRLSFQPP 266          
BLAST of mRNA_P-fluviatile_contig10.860.1 vs. uniprot
Match: UPI000E6FC8C0 (uncharacterized protein LOC113311561 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FC8C0)

HSP 1 Score: 78.6 bits (192), Expect = 6.290e-14
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  161 TKVVLLAAVVRPHHTLATNALSTATSACGP-SQRRSAQRNSRNRTTGTLVTMV*VEVTKEIHMAKLIDNVIPAIKKKWRAGTRHRIIFTQQDSAKPCRAIEDQDLLEACYSDGFDTKLINPPP 526
            TKV+ LA V RP +  A N   +      P + +  AQRNS+NRT GT+ T   + VTK++  + LI+ V PA++ KW   +    IF QQD+A+P     DQ+ LE    DGFD +L   PP
Sbjct:   41 TKVMFLAVVARPRYDSANNEEFSGKIGIFPFTFQEPAQRNSKNRTAGTMETKEILSVTKDVIRSCLINKVFPAMRSKWPRSSNMDPIFIQQDNARPHINPNDQEFLEDASKDGFDIRLSFQPP 163          
BLAST of mRNA_P-fluviatile_contig10.860.1 vs. uniprot
Match: A0A6P6TEQ3_COFAR (uncharacterized protein LOC113700698 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6TEQ3_COFAR)

HSP 1 Score: 78.6 bits (192), Expect = 1.610e-13
Identity = 54/159 (33.96%), Postives = 85/159 (53.46%), Query Frame = 2
Query:   47 DFEDFVHVDER*RKGRSSSCTTMRNPLFARSRARGLSQT---KVVLLAAVVRPHHTLATNALSTATSACGPSQ-RRSAQRNSRNRTTGTLVTMV*VEVTKEIHMAKLIDNVIPAIKKKWRAGTRHRIIFTQQDSAKPCRAIEDQDLLEACYSDGFDTKL 511
            +  D +H+DE+      +S     +PL         S+    K++ LAAV RP + +  N          P   +  A+RNS+NRT GTL T   + +TK++  + LI+ ++PAI++KW   +  ++IF QQD+AKP   I D + +EA   DGFD +L
Sbjct:  250 NMHDRIHIDEKWFYMSKTSQRYYLHPLEHEPYRTCKSKRFVPKLMFLAAVARPRYDITLNKQFNGKIGIWPFVFKEPAKRNSKNRTAGTLETKPILSITKDVIRSCLIEKLLPAIREKWPCSSS-KMIFIQQDNAKPHLGINDDEFVEAAKIDGFDIRL 407          
BLAST of mRNA_P-fluviatile_contig10.860.1 vs. uniprot
Match: A0A484N2F7_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N2F7_9ASTE)

HSP 1 Score: 75.1 bits (183), Expect = 1.700e-13
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  266 AQRNSRNRTTGTLVTMV*VEVTKEIHMAKLIDNVIPAIKKKWRAGTRHRIIFTQQDSAKPCRAIEDQDLLEACYSDGFDTKLINPPP 526
            AQRNSRNR  GTLVT     V K+++ + LI+ VI AIK+KW  G+  R+I  QQD+AKP  A  D   L+   +DGFD  L   PP
Sbjct:   32 AQRNSRNRPRGTLVTKPVPIVNKDVYRSFLINKVILAIKEKWPTGSNKRVII-QQDNAKPHIACNDPAFLQVAQADGFDISLTFQPP 117          
BLAST of mRNA_P-fluviatile_contig10.860.1 vs. uniprot
Match: A0A485KBU5_9STRA (Aste57867_2438 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBU5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.860e-13
Identity = 64/182 (35.16%), Postives = 91/182 (50.00%), Query Frame = 2
Query:    2 LGWVRTTPGGSRVVHDFEDFVHVDER*----RKGRSSSCTTMRNPLFARSRARGLSQTKVVLLAAVVRPHHTLATNALSTATSACGP---SQRRSAQRNSRNRTTGTLVTMV*VEVTKEIHMAKLIDNVIPAIKKKWRAGTRHRIIFTQQDSAKPCRAIEDQDLLEACYSDGFDTKLINPPP 526
            L W +   G   V  D   +VH+DE+     R  R+        P    ++++    TKV+ L+AV RP      N         G    ++   AQRNSRNR +GTLVT V V V+++ +   L++NVIPAIK KW    R   I  QQD+A+P     D+ +L AC +DG+D  +   PP
Sbjct:  144 LKWAQKFVGPDLVFDDMMSYVHIDEKWFYMTRVKRTLYLLPGEEPPHRTTQSKRFI-TKVMFLSAVARPRWNY--NKDEWFDGKIGTWHFTEVVPAQRNSRNRPSGTLVT-VPVNVSRDTYRDMLVNNVIPAIKNKW-PDARTSCIVIQQDNARPHVTTTDKGVLAACKADGWDIAMECQPP 320          
BLAST of mRNA_P-fluviatile_contig10.860.1 vs. uniprot
Match: A0A484LB41_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LB41_9ASTE)

HSP 1 Score: 74.3 bits (181), Expect = 1.100e-12
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  266 AQRNSRNRTTGTLVTMV*VEVTKEIHMAKLIDNVIPAIKKKWRAGTRHRIIFTQQDSAKPCRAIEDQDLLEACYSDGFDTKLINPPP 526
            AQRNSRNR  GTLVT     V K+++ + LI+ VIPAIK+KW   +  R+I  QQD++KP  A  D   L+   +DGFD  L   PP
Sbjct:   34 AQRNSRNRPRGTLVTKPVPIVNKDVYRSFLINKVIPAIKEKWPTDSNKRVII-QQDNSKPHIACNDPLFLQVAQADGFDISLTFQPP 119          
BLAST of mRNA_P-fluviatile_contig10.860.1 vs. uniprot
Match: W4GWE0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GWE0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.220e-12
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  254 QRRSAQRNSRNRTTGTLVTMV*VEVTKEIHMAKLIDNVIPAIKKKWRAGTRHRIIFTQQDSAKPCRAIEDQDLLEACYSDGFDTKLINPPP 526
            +R  A+R+SRNR  GTLVT   V VT++I+   LIDNVIPAIK KW   +  R I  QQD+A+P     D  ++EAC+SD +D  ++  PP
Sbjct:  181 ERVPAERSSRNRAAGTLVTKP-VSVTQDIYRKMLIDNVIPAIKAKWPRNSS-RCITIQQDNARPHVPPLDARIVEACHSDRWDMSVVYQPP 269          
BLAST of mRNA_P-fluviatile_contig10.860.1 vs. uniprot
Match: A0A024U573_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U573_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.750e-12
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 2
Query:  266 AQRNSRNRTTGTLVTMV*VEVTKEIHMAKLIDNVIPAIKKKWRAGTRHRIIFTQQDSAKPCRAIEDQDLLEACYSDGFDTKLINPPP 526
            A+R+SRNR  GTLVT   V VT+ ++   L+ +VIPAIK KW  G   R+ F QQD AKP  A  D D++EAC S G+  +L   PP
Sbjct:  133 AERSSRNRPAGTLVTTP-VAVTRPVYKDMLVKHVIPAIKTKWPKGASRRV-FLQQDFAKPHVAPTDDDIIEACSSGGWAMELKFQPP 217          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GP40_9STRA8.600e-1736.96Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI000E6FC7BC1.940e-1541.46uncharacterized protein LOC113359119 n=1 Tax=Papav... [more]
UPI000E6FD0CA1.520e-1442.28uncharacterized protein LOC113359240 n=2 Tax=Papav... [more]
UPI000E6FC8C06.290e-1440.65uncharacterized protein LOC113311561 n=1 Tax=Papav... [more]
A0A6P6TEQ3_COFAR1.610e-1333.96uncharacterized protein LOC113700698 n=2 Tax=Coffe... [more]
A0A484N2F7_9ASTE1.700e-1349.43Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A485KBU5_9STRA2.860e-1335.16Aste57867_2438 protein n=2 Tax=Aphanomyces stellat... [more]
A0A484LB41_9ASTE1.100e-1248.28Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
W4GWE0_9STRA2.220e-1248.35Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024U573_9STRA6.750e-1249.43Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:3045507..3046107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.0
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog4113.PGSC0003DMT400005608
EggNOG OGs2CMKC@1,2QQNW@2759,37TMG@33090,3GG9M@35493,44TRN@71274
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size602
Cds size258
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815401.433176-UTR-P-fluviatile_contig10:3045506..30458491622815401.433176-UTR-P-fluviatile_contig10:3045506..3045849Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3045507..3045849 +
1693561763.271582-UTR-P-fluviatile_contig10:3045506..30458491693561763.271582-UTR-P-fluviatile_contig10:3045506..3045849Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 3045507..3045849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815401.447278-CDS-P-fluviatile_contig10:3045849..30461071622815401.447278-CDS-P-fluviatile_contig10:3045849..3046107Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3045850..3046107 +
1693561763.281005-CDS-P-fluviatile_contig10:3045849..30461071693561763.281005-CDS-P-fluviatile_contig10:3045849..3046107Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 3045850..3046107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.860.1prot_P-fluviatile_contig10.860.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 3045850..3046107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.860.1

>prot_P-fluviatile_contig10.860.1 ID=prot_P-fluviatile_contig10.860.1|Name=mRNA_P-fluviatile_contig10.860.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=86bp
MAKLIDNVIPAIKKKWRAGTRHRIIFTQQDSAKPCRAIEDQDLLEACYSD
GFDTKLINPPPTVLTPTSWTWAFSRESRPCRATFEP
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mRNA from alignment at P-fluviatile_contig10:3045507..3046107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.860.1 ID=mRNA_P-fluviatile_contig10.860.1|Name=mRNA_P-fluviatile_contig10.860.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=601bp|location=Sequence derived from alignment at P-fluviatile_contig10:3045507..3046107+ (Porterinema fluviatile SAG_2381)
GTTGGGATGGGTGCGGACAACACCAGGCGGCTCCAGAGTCGTGCACGACT TCGAGGACTTCGTCCACGTGGATGAGAGATGAAGAAAGGGCCGAAGTTCA AGTTGTACGACAATGAGGAACCCTCTGTTCGCAAGGTCTAGAGCAAGAGG TTTATCACAAACAAAGGTCGTGCTCCTCGCTGCTGTAGTCCGCCCGCATC ACACCCTAGCCACCAACGCTCTTTCGACGGCAACATCGGCTTGTGGGCCT TCACAGCGAAGGTCTGCACAGCGCAACAGCCGGAACCGTACGACAGGGAC TCTCGTCACAATGGTGTGAGTGGAGGTTACGAAGGAGATCCACATGGCGA AACTGATCGACAACGTGATTCCCGCAATCAAGAAAAAATGGCGGGCTGGG ACTCGACACAGGATCATCTTCACCCAGCAGGATAGCGCGAAGCCTTGCCG TGCTATCGAAGACCAGGACTTGCTGGAGGCGTGTTACTCGGATGGATTCG ACACCAAACTCATCAACCCGCCACCCACGGTGCTAACACCAACGTCCTGG ACCTGGGCTTTTTCGCGTGAATCCCGTCCCTGCAGGGCCACTTTCGAGCC A
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:3045507..3046107+

>mRNA_P-fluviatile_contig10.860.1 ID=mRNA_P-fluviatile_contig10.860.1|Name=mRNA_P-fluviatile_contig10.860.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=516bp|location=Sequence derived from alignment at P-fluviatile_contig10:3045507..3046107+ (Porterinema fluviatile SAG_2381)
ATGGCGAAACTGATCGACAACGTGATTCCCGCAATCAAGAAAAAATGGCG
GGCTGGGACTCGACACAGGATCATCTTCACCCAGCAGGATAGCGCGAAGC
CTTGCCGTGCTATCGAAGACCAGGACTTGCTGGAGGCGTGTTACTCGGAT
GGATTCGACACCAAACTCATCAACCCGCCACCCACGGTGCTAACACCAAC
GTCCTGGACCTGGGCTTTTTCGCGTGAATCCCGTCCCTGCAGGGCCACTT
TCGAGCCAATGGCGAAACTGATCGACAACGTGATTCCCGCAATCAAGAAA
AAATGGCGGGCTGGGACTCGACACAGGATCATCTTCACCCAGCAGGATAG
CGCGAAGCCTTGCCGTGCTATCGAAGACCAGGACTTGCTGGAGGCGTGTT
ACTCGGATGGATTCGACACCAAACTCATCAACCCGCCACCCACGGTGCTA
ACACCAACGTCCTGGACCTGGGCTTTTTCGCGTGAATCCCGTCCCTGCAG
GGCCACTTTCGAGCCA
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