mRNA_P-fluviatile_contig10.851.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.851.1
Unique NamemRNA_P-fluviatile_contig10.851.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig10.851.1 vs. uniprot
Match: D7FIH9_ECTSI (Sof1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIH9_ECTSI)

HSP 1 Score: 872 bits (2253), Expect = 1.700e-314
Identity = 428/448 (95.54%), Postives = 443/448 (98.88%), Query Frame = 1
Query:    1 MKVKTISRVEESYTRDCKGDRVQVHRNRDPSLHPFEKAREYTRALTAVKLDKMFAKPLVGALDGHGDGVFCSATSRRNLVQFLSGACDGEIRVWDLSRRSCVWRAVGHRGFVRGLSVTPNGESFLSAGDDGIVKQWELGVASDLTQMPEPTATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDHTRAEPTLSYQWGADSNNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRIFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKSRYEHMPEVRRIAKHRHVPKIIKKAAEAERVQRDKERRKVDNRIKHSKPGTVETVPERKKKIVKELT 1344
            MKVKTISRVEESYTRDCKGDR+QVHRNRDPSLHPFEKAREYTRAL +VKLDKMFAKPLVGALDGHGDGVFCSA+SRRNLVQFLSGACDGEIR+WDLSRRSCVWRAVGH+GFVRGLSVTP+G SFLSAGDDG+VKQWELGVASDL++ PEPTATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDH+RAEPTLSYQWGADSNNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVR+FPHR+GRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYR+SLKK RYEHMPEVRRIAKHRHVP+I+KKAAEAERVQRDKERRKVDNRIKHSK GTVETVPERKKKIVKELT
Sbjct:    1 MKVKTISRVEESYTRDCKGDRLQVHRNRDPSLHPFEKAREYTRALQSVKLDKMFAKPLVGALDGHGDGVFCSASSRRNLVQFLSGACDGEIRLWDLSRRSCVWRAVGHQGFVRGLSVTPDGASFLSAGDDGMVKQWELGVASDLSETPEPTATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDHSRAEPTLSYQWGADSNNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRDSLKK-RYEHMPEVRRIAKHRHVPRIVKKAAEAERVQRDKERRKVDNRIKHSKAGTVETVPERKKKIVKELT 447          
BLAST of mRNA_P-fluviatile_contig10.851.1 vs. uniprot
Match: A0A836C9W7_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W7_9STRA)

HSP 1 Score: 623 bits (1606), Expect = 2.750e-216
Identity = 302/448 (67.41%), Postives = 362/448 (80.80%), Query Frame = 1
Query:    1 MKVKTISRVEESYTRDCKGDRVQVHRNRDPSLHPFEKAREYTRALTAVKLDKMFAKPLVGALDGHGDGVFCSATSRRNLVQFLSGACDGEIRVWDLSRRSCVWRAVGHRGFVRGLSVTPNGESFLSAGDDGIVKQWELGVASDLTQMPEPTATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDHTRAEPTLSYQWGADSNNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRIFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKSRYEHMPEVRRIAKHRHVPKIIKKAAEAERVQRDKERRKVDNRIKHSKPGTVETVPERKKKIVKELT 1344
            MK+KTISR+EE YTRDCK D V++HRN DP LHPFEKAREY RAL A KLDKMFAKP +GALDGH DGVFC+ATS +NLVQFLSGACDGE+RVWDLSRR+CVW+A  H GFVRG++VTP+G SFLSAGDDG+VK+W+L +ASDL + P PTA W GK  GF++LDHHW DA FATA D+V+LWD  RAEPT +++WGAD+ N VRFNPAERCLLASTGS R   LYD RA  P+RKV L+MRSN VAWNP+ P  F  A ED   YTFD+R L  AL++HKDHV AVM V+FSPTG+E A+  YDRT+RIF  R GRSREVYHT+RMQR FCV +SADAR+V++GSDDT +RIWKA ASE+LG +VPREAR+  Y ++LK+ RY  MP+VRRIAKHRHVP+ ++ AA AE VQRDK +RK DN  +H+K G    VPER+++++ E T
Sbjct:    1 MKIKTISRLEEHYTRDCKTDVVKIHRNLDPKLHPFEKAREYGRALQATKLDKMFAKPFIGALDGHTDGVFCTATSPKNLVQFLSGACDGEVRVWDLSRRACVWKAAAHTGFVRGVAVTPDGRSFLSAGDDGLVKRWDLAIASDLEERPRPTAQWTGKM-GFRALDHHWGDATFATASDAVELWDAERAEPTHAFRWGADAVNSVRFNPAERCLLASTGSDRGAALYDARAAAPLRKVFLRMRSNGVAWNPRVPAQFALACEDHCAYTFDVRRLGAALVVHKDHVGAVMAVAFSPTGRELATAGYDRTLRIFGARDGRSREVYHTQRMQRAFCVAYSADARYVLSGSDDTCVRIWKARASERLGAIVPREARRLRYLDTLKR-RYADMPDVRRIAKHRHVPRAVRGAARAEGVQRDKAKRKADNVRRHAKDGGDAPVPERRRRVIAEQT 446          
BLAST of mRNA_P-fluviatile_contig10.851.1 vs. uniprot
Match: A0A024UAB8_9STRA (Sof1 domain-containing protein n=11 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAB8_9STRA)

HSP 1 Score: 560 bits (1443), Expect = 2.730e-191
Identity = 278/470 (59.15%), Postives = 348/470 (74.04%), Query Frame = 1
Query:    1 MKVKTISRVEESYTRDCKGDRVQVHRNRDPSLHPFEKAREYTRALTAVKLDKMFAKPLVGALDGHGDGVFCSATSRRNLVQFLSGACDGEIRVWDLSRRSCVWRAVGHRGFVRGLSVTPNGESFLSAGDDGIVKQWELGVASDLTQMPEPTATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDHTRAEPTLSYQWGADSNNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRIFPHRSGRSREVYHTKRMQR-----------------------VFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKSRYEHMPEVRRIAKHRHVPKIIKKAAEAERVQRDKERRKVDNRIKHSKPGTVETVPERKKKIVKEL 1341
            MKVKTISRVE+++T++   DR ++HRN DP LHPFE+ REYTRAL AVKLDK+FAKP VGALDGH D V C ATS ++LVQF+SGACDGEIR+WDL RR CVW   GH GFVRGL+V P+G +F S  +D  +KQW + +A++    PEP  T+ GK   F  +DHHW++  FAT    V +WDH R++P   Y WGADS   V+FNPAE  LLASTGS R V LYDTR    MRK+V++MR+NA+AWNP EP +F  ANED NLYTFD+RNL++A+MIHKDHVSAVMDV++SPTG+EF SGSYDR++RIF  RS +SREVYHTKRMQR                       +F V FSADA+FV++GSDDTN+RIWKA AS  LGK+ PRE +K EY ++LKK RY+H+ EV+RIAKHRHVPK IKKAA A++  +++E +K+ N  KHSKPG V  V  RKK +++++
Sbjct:    1 MKVKTISRVEQTFTQELATDRTKIHRNFDPKLHPFERPREYTRALNAVKLDKLFAKPFVGALDGHCDSVSCFATSNKSLVQFVSGACDGEIRLWDLPRRKCVWSVYGHGGFVRGLTVAPDGNTFFSCSEDKSIKQWRMAIANE-DDSPEPVQTFHGKE-SFMGIDHHWSNTTFATCSSVVQVWDHNRSDPIHHYSWGADSITSVKFNPAEASLLASTGSDRAVSLYDTRLAQSMRKIVMEMRNNALAWNPMEPYHFTVANEDHNLYTFDMRNLDRAVMIHKDHVSAVMDVAYSPTGKEFVSGSYDRSIRIFNVRSAKSREVYHTKRMQRWVHKIAGWMHRGDLMGGLFLNCRIFAVKFSADAKFVLSGSDDTNIRIWKAQASRTLGKLNPRERKKLEYNDALKK-RYQHLTEVKRIAKHRHVPKAIKKAAAAKQEGKERETKKLANVRKHSKPGKVPLVDIRKKSVIRQV 467          
BLAST of mRNA_P-fluviatile_contig10.851.1 vs. uniprot
Match: A0A418B2S4_9STRA (SAM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B2S4_9STRA)

HSP 1 Score: 560 bits (1443), Expect = 1.790e-186
Identity = 278/470 (59.15%), Postives = 348/470 (74.04%), Query Frame = 1
Query:    1 MKVKTISRVEESYTRDCKGDRVQVHRNRDPSLHPFEKAREYTRALTAVKLDKMFAKPLVGALDGHGDGVFCSATSRRNLVQFLSGACDGEIRVWDLSRRSCVWRAVGHRGFVRGLSVTPNGESFLSAGDDGIVKQWELGVASDLTQMPEPTATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDHTRAEPTLSYQWGADSNNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRIFPHRSGRSREVYHTKRMQR-----------------------VFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKSRYEHMPEVRRIAKHRHVPKIIKKAAEAERVQRDKERRKVDNRIKHSKPGTVETVPERKKKIVKEL 1341
            MKVKTISRVE+++T++   DR ++HRN DP LHPFE+ REYTRAL AVKLDK+FAKP VGALDGH D V C ATS ++LVQF+SGACDGEIR+WDL RR CVW   GH GFVRGL+V P+G +F S  +D  +KQW + +A++    PEP  T+ GK   F  +DHHW++  FAT    V +WDH R++P   Y WGADS   V+FNPAE  LLASTGS R V LYDTR    MRK+V++MR+NA+AWNP EP +F  ANED NLYTFD+RNL++A+MIHKDHVSAVMDV++SPTG+EF SGSYDR++RIF  RS +SREVYHTKRMQR                       +F V FSADA+FV++GSDDTN+RIWKA AS  LGK+ PRE +K EY ++LKK RY+H+ EV+RIAKHRHVPK IKKAA A++  +++E +K+ N  KHSKPG V  V  RKK +++++
Sbjct:  335 MKVKTISRVEQTFTQELATDRTKIHRNFDPKLHPFERPREYTRALNAVKLDKLFAKPFVGALDGHCDSVSCFATSNKSLVQFVSGACDGEIRLWDLPRRKCVWSVYGHGGFVRGLTVAPDGNTFFSCSEDKSIKQWRMAIANE-DDSPEPVQTFHGKE-SFMGIDHHWSNTTFATCSSVVQVWDHNRSDPIHHYSWGADSITSVKFNPAEASLLASTGSDRAVSLYDTRLAQSMRKIVMEMRNNALAWNPMEPYHFTVANEDHNLYTFDMRNLDRAVMIHKDHVSAVMDVAYSPTGKEFVSGSYDRSIRIFNVRSAKSREVYHTKRMQRWVHKIAGWMHRGDLMGWLFLNCRIFAVKFSADAKFVLSGSDDTNIRIWKAQASRTLGKLNPRERKKLEYNDALKK-RYQHLTEVKRIAKHRHVPKAIKKAAAAKQEGKERETKKLANVRKHSKPGKVPLVDIRKKSVIRQV 801          
BLAST of mRNA_P-fluviatile_contig10.851.1 vs. uniprot
Match: A0A482SJF6_9ARCH (Sof1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJF6_9ARCH)

HSP 1 Score: 534 bits (1375), Expect = 2.320e-181
Identity = 264/447 (59.06%), Postives = 331/447 (74.05%), Query Frame = 1
Query:    1 MKVKTISRVEESYTRDCKGDRVQVHRNRDPSLHPFEKAREYTRALTAVKLDKMFAKPLVGALDGHGDGVFCSATSRRNLVQFLSGACDGEIRVWDLSRRSCVWRAVGHRGFVRGLSVTPNGESFLSAGDDGIVKQWELGVASDLTQMPEPTATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDHTRAEPTLSYQWGADSNNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRIFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKSRYEHMPEVRRIAKHRHVPKIIKKAAEAERVQRDKERRKVDNRIKHSKPGTVETVPERKKKIVKEL 1341
            MK+KTISR EE Y R  K D V+VHRNRDP +HPFE+AREY RA+ A KLDK+FAKP VGALDGH DGV+C ++ R +LV F+SG+CDGE+RVWDLS + CVW A+ H GFVRG++    G +F S GDD ++K W L    +      P    +  S    S+DHHW D++FAT+GD V +WD TRA+P  +Y+WGADS  CVR+NPAE CLLASTG+ R VCLYD R+++PMRK+V+ M +N VAWNP+EPMNF  A+ED NLYTFD+R L+ ALMIHKDHV AVMDV++SPTG+EF S SYDRTVRIF   SG+SRE YHTKRMQRVFC  FSADA +V++GSDDTN+RIW++ AS+       R  RK++Y  SLKK R+ HMPE++R+   + +PK I+KA     VQR  + RK +NRIKHSK G+V    ERKK ++KEL
Sbjct:    1 MKIKTISRTEEDYVRKSKLDIVKVHRNRDPVVHPFERAREYARAVVATKLDKIFAKPFVGALDGHKDGVYCMSSVRSHLVPFISGSCDGELRVWDLSTKHCVWHAIAHEGFVRGVAPDVAGNAFYSCGDDKVIKLWALQHQLEEEGEVSPLNV-IHSSHSMTSIDHHWVDSQFATSGDVVSIWDGTRAQPINTYKWGADSVLCVRYNPAEACLLASTGNDRSVCLYDLRSSLPMRKMVMAMNANKVAWNPREPMNFTLASEDYNLYTFDMRKLDHALMIHKDHVGAVMDVAYSPTGREFVSASYDRTVRIFNVTSGKSREAYHTKRMQRVFCSAFSADAEYVLSGSDDTNVRIWRSVASKSGAVDSGRAERKKQYMQSLKK-RFAHMPEIKRMNSDKKLPKAIRKAKGIMHVQRLSQHRKTENRIKHSKEGSVILPTERKKAVIKEL 445          
BLAST of mRNA_P-fluviatile_contig10.851.1 vs. uniprot
Match: M4C0L6_HYAAE (DDB1- and CUL4-associated factor 13 n=18 Tax=Peronosporaceae TaxID=4777 RepID=M4C0L6_HYAAE)

HSP 1 Score: 533 bits (1372), Expect = 5.140e-181
Identity = 265/447 (59.28%), Postives = 333/447 (74.50%), Query Frame = 1
Query:    1 MKVKTISRVEESYTRDCKGDRVQVHRNRDPSLHPFEKAREYTRALTAVKLDKMFAKPLVGALDGHGDGVFCSATSRRNLVQFLSGACDGEIRVWDLSRRSCVWRAVGHRGFVRGLSVTPNGESFLSAGDDGIVKQWELGVASDLTQMPEPTATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDHTRAEPTLSYQWGADSNNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRIFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKSRYEHMPEVRRIAKHRHVPKIIKKAAEAERVQRDKERRKVDNRIKHSKPGTVETVPERKKKIVKEL 1341
            M+V+TISRVE+ +T++ + D+++V RN DP+LHPFE+ REYTRAL AVKL++MFAKP +GALDGH DGV   ATS  +LV  +SGA DGE+RVWDL RR CVW   GHRGFVRGL+VTP+G +F S  +D  VKQW L V S+   +P   AT+  K   F  +DHHW+   FAT G  V +WD +R+ PT  + WGADS N V FNPAE  LLASTGS R + LYD R    MRK+V++MRSNA+AWNP EPMNF  ANE+ NLYTFD+R +N+A+M+HKDHVSAVMDV++SPTG+EF +GSYDRT+RIF  RS +SREVYHT+RMQR       AD+ FV++GSDDTN+R+WKA AS+KL KV PRE RK EY  SLK  RY+H+ E+ RIAKHRHVPK IKKAA A+R    ++++K+ NR  H+K G V     R+K +VKE+
Sbjct:    1 MRVQTISRVEKDFTQEVQSDKLKVFRNYDPALHPFERPREYTRALNAVKLERMFAKPFIGALDGHCDGVTALATSPSSLVPLVSGAADGEVRVWDLPRRKCVWNVYGHRGFVRGLAVTPDGSTFYSCSEDKTVKQWALRVKSEDEDVPTALATFTSKE-PFLGIDHHWSQKMFATCGSKVQVWDPSRSTPTHEFAWGADSINSVHFNPAEASLLASTGSDRNITLYDIRVASSMRKIVMEMRSNALAWNPMEPMNFTVANENHNLYTFDMRKMNRAMMVHKDHVSAVMDVAYSPTGREFVAGSYDRTIRIFNVRSTKSREVYHTQRMQR-------ADSNFVLSGSDDTNIRVWKAEASKKLSKVGPRERRKIEYNESLK-DRYQHLREISRIAKHRHVPKAIKKAAHAKREASSRDQKKMANRRAHAKEGAVPHTNIREKVVVKEM 438          
BLAST of mRNA_P-fluviatile_contig10.851.1 vs. uniprot
Match: A0A6P4ZG13_BRABE (DDB1- and CUL4-associated factor 13 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZG13_BRABE)

HSP 1 Score: 500 bits (1288), Expect = 3.070e-168
Identity = 243/446 (54.48%), Postives = 314/446 (70.40%), Query Frame = 1
Query:    1 MKVKTISRVEESYTRDCKGDRVQVHRNRDPSLHPFEKAREYTRALTAVKLDKMFAKPLVGALDGHGDGVFCSATSRRNLVQFLSGACDGEIRVWDLSRRSCVWRAVGHRGFVRGLSVTPNGESFLSAGDDGIVKQWELGVASDLTQMPEPTATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDHTRAEPTLSYQWGADSNNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRIFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKSRYEHMPEVRRIAKHRHVPKIIKKAAEAERVQRDKERRKVDNRIKHSKPGTVETVPERKKKIVKE 1338
            MK+K +SR  + Y R+ K D  ++ RN DP+LHPFE AREYTRAL A KL+++FAKP VGALDGH DGV C A    +L   L+GACDGEI++W+L  R C      H GFVRG+ VTP+  + LS GDD  +K W L       +  EP  T +GKS  F  +DHHW DA FAT G +VD+WDH RAEP  S+ WG DS NCVRFNP E+  LAS  + R + LYDTR + P+RKV+L MRSN +AWNP E   F  ANED NLY+FD+R L     IH DHV+AV+D+ +SPTG+EF SGS+D+T+RIFP   GRSREVYHTKRMQRVFC+ +S D +++++GSD+TN+RIWKA A+EK+GK+ PRE     Y + LK+ +++H P+VRRIA+HRHVPK +       R+ +D  RRK +NRI+HSKPG+++   ER+K +V E
Sbjct:    1 MKIKVLSRNPDDYGRETKRDIQRLPRNYDPALHPFEAAREYTRALNATKLERVFAKPFVGALDGHRDGVNCMAKHPGSLSTLLTGACDGEIKIWNLGSRDCRRTIQAHTGFVRGMCVTPDHGNVLSIGDDKTIKMWSLTSPEAGEEEEEPVQTILGKS-IFTGIDHHWKDATFATCGQTVDIWDHARAEPLRSFSWGVDSLNCVRFNPIEKHYLASCAADRSIILYDTRGSSPLRKVILNMRSNVLAWNPMEAFVFTVANEDHNLYSFDIRRLTSPFNIHMDHVNAVLDLDYSPTGREFVSGSFDKTIRIFPLEKGRSREVYHTKRMQRVFCIKWSLDNKYILSGSDETNVRIWKAKAAEKIGKLTPREESALTYSDKLKE-KFQHHPQVRRIARHRHVPKEVYHLTRQTRIMKDSRRRKEENRIRHSKPGSIKKKREREKVVVAE 444          
BLAST of mRNA_P-fluviatile_contig10.851.1 vs. uniprot
Match: A0A2D4BDS0_PYTIN (Glycoside hydrolase, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDS0_PYTIN)

HSP 1 Score: 504 bits (1299), Expect = 1.220e-163
Identity = 252/447 (56.38%), Postives = 311/447 (69.57%), Query Frame = 1
Query:    1 MKVKTISRVEESYTRDCKGDRVQVHRNRDPSLHPFEKAREYTRALTAVKLDKMFAKPLVGALDGHGDGVFCSATSRRNLVQFLSGACDGEIRVWDLSRRSCVWRAVGHRGFVRGLSVTPNGESFLSAGDDGIVKQWELGVASDLTQMPEPTATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDHTRAEPTLSYQWGADSNNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRIFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKSRYEHMPEVRRIAKHRHVPKIIKKAAEAERVQRDKERRKVDNRIKHSKPGTVETVPERKKKIVKEL 1341
            MKVKTISRVE+ +T + + D+++V RN DP+LHPFE+ REYTRAL AVKLD++FAKP VGALDGH DGV    TS ++LV F+SGACDGEIR+WDL R+ CVW A GH+GFVRGL+V P+G  F S  +D  VKQW L V  D  +MP+  +T+  K   F  +DHHW+   F T    V +WD  R+EPT  + WGADS   V+FNPAE  LLAS GS R + LYD R    MRKVVL MRSNA+AWNP EP NF  ANED NLYTFD+R LN+ALM+HKDHVSAVMDV++SPTG+EF SGSYDRT+RIF   S +SREVYH K                           IWK+ A++KLGK+ PRE RK EY  SLK+ RY+H+ E+ RI+KHRHVPK IKKA EA+R   ++E++K  NR  H++PG V     R++ I+KEL
Sbjct:  459 MKVKTISRVEKDFTAEVESDKLKVFRNYDPALHPFERPREYTRALNAVKLDRLFAKPFVGALDGHSDGVSAITTSPKSLVAFISGACDGEIRIWDLPRKKCVWNAYGHKGFVRGLTVAPSGGIFYSCSEDKTVKQWSLQVNDDEEEMPQALSTFTSKE-PFLGIDHHWSKDLFVTCSSKVQVWDPHRSEPTHEFSWGADSITSVKFNPAEESLLASCGSDRNITLYDVRMASSMRKVVLDMRSNALAWNPMEPFNFTVANEDHNLYTFDMRKLNRALMVHKDHVSAVMDVAYSPTGREFVSGSYDRTIRIFGVNSAKSREVYHAKXXXXXXXXXXXXXXXXXXXXXXXXXXXIWKSEANKKLGKIAPRERRKLEYNESLKE-RYQHLREISRISKHRHVPKAIKKATEAKREANEREKKKTANRRAHARPGAVPFTNTREQAIIKEL 903          
BLAST of mRNA_P-fluviatile_contig10.851.1 vs. uniprot
Match: A0A7S0MFA3_9CRYP (DDB1- and CUL4-associated factor 13 (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MFA3_9CRYP)

HSP 1 Score: 488 bits (1257), Expect = 1.700e-163
Identity = 245/445 (55.06%), Postives = 312/445 (70.11%), Query Frame = 1
Query:    1 MKVKTISRVEESYTRDCKGDRVQVHRNRDPSLHPFEKAREYTRALTAVKLDKMFAKPLVGALDGHGDGVFCSATSRRNLVQFLSGACDGEIRVWDLSRRSCVWRAVGHRGFVRGLSVTPNGESFLSAGDDGIVKQWELGVASDLTQMPEPTATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDHTRAEPTLSYQWGADSNNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRIFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKSRYEHMPEVRRIAKHRHVPKIIKKAAEAERVQRDKERRKVDNRIKHSKPGTVETVPERKKKIVK 1335
            MKVK ++RVEE +TR+ KGD V+  RN DP LHPFE+AREYTRAL AVKLDK+FAKP V AL GH D V C A SR  L   +SG+CDGE+R+WDL   +  W    H GFVRG++ +P G++  S GDD  VK W+     D + +  P  T +G+   F  LDHHWT+   AT G  V +WDH R+EP  +  WG++S   VRFNPAER +LASTGS R   L+D R+   +RK+V   RSN + WNP E  NFV ANED NLYTFD+R ++ AL +H DHVSAV+DV FSPTGQEF +GSYDRTVRIF H  G SRE+YH KRMQRV+ V F+ DAR+V++ SDD N+R+W+A ASE +  ++PRE R  EYR  LK+ R++  PEVRRIA+HRH+P+ + KA + + V +  ++RK DN  +HS+PG+V  VPERKK IVK
Sbjct:    9 MKVKVLNRVEEDFTRERKGDVVKTFRNPDPVLHPFERAREYTRALNAVKLDKVFAKPFVRALSGHRDAVTCMARSRVKLTDIISGSCDGELRLWDLCTGNSRWTTTAHSGFVRGIAFSPEGDTIWSCGDDKTVKMWQRDPDEDESAIVSPIHTILGQH-AFLGLDHHWTEPIVATCGVDVQIWDHQRSEPIHTLTWGSESVLSVRFNPAERQVLASTGSDRSTVLHDLRSATAIRKLVTAKRSNKMCWNPMEAFNFVLANEDNNLYTFDMRKMDCALCVHMDHVSAVLDVDFSPTGQEFVTGSYDRTVRIFRHNEGHSREIYHGKRMQRVWSVLFTGDARWVLSASDDFNVRLWRAKASEGVKPLLPREQRGHEYRERLKE-RFKEAPEVRRIARHRHLPRAVLKAGKLKGVIKQSKKRKEDNARRHSRPGSVPHVPERKKHIVK 451          
BLAST of mRNA_P-fluviatile_contig10.851.1 vs. uniprot
Match: W1P0N3_AMBTC (DDB1- and CUL4-associated factor 13 n=3 Tax=Magnoliopsida TaxID=3398 RepID=W1P0N3_AMBTC)

HSP 1 Score: 486 bits (1251), Expect = 1.410e-162
Identity = 240/453 (52.98%), Postives = 325/453 (71.74%), Query Frame = 1
Query:    1 MKVKTISRVEESYTRDCKGDRVQVHRNRDPSLHPFEKAREYTRALTAVKLDKMFAKPLVGALDGHGDGVFCSATSRRNLVQFLSGACDGEIRVWDLSRRSCVWRAVGHRGFVRGLSVTPNGESFLSAGDDGIVKQWELG--VASDLTQMPE----PTATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDHTRAEPTLSYQWGADSNNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRIFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKSRYEHMPEVRRIAKHRHVPKIIKKAAEAERVQRDKERRKVDNRIKHSKPGTVETVPERKKKIVKEL 1341
            MKVK ISR  E +TR+   D  +V RN DP LH  EKA EY RAL A KL+K+FAKP +GA+DGH D + C A +   L    SG+ DG+IR+WD+S RS V + VGH+G VRGL+ + +G   +S G+D  V+ W +     +DL    E    P A ++ K+  F+++DH W    FAT G  VD+WDH+R+EP  S+ WG+D+   VRFNPA + +LA++ S R + LYD R  +P +K+V+Q R+NA+AWNP+EPMNF  ANED N Y++D+RN+ QA  +H+DHVSAVMD+ +SPTG+EF +GSYDRTVRIF + +G SRE+YHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG ++PRE +KQEY +++K+ R++H+PEV+RI +HRH+PK I KAA   R   D E++K + +  HS PGTV TVP RK++IV E+
Sbjct:    1 MKVKVISRSAEEFTRERSQDLQRVFRNFDPKLHAQEKAVEYARALNAAKLEKIFAKPFLGAMDGHVDAISCMAKNPNYLKGIFSGSMDGDIRLWDISSRSTVQQFVGHKGAVRGLAASTDGSILVSCGNDCTVRLWSIPGPKIADLDDASENASNPLAVYVSKN-AFRAVDHQWDGNLFATVGAQVDIWDHSRSEPVTSFAWGSDTVVSVRFNPAHKDILATSASDRSITLYDLRMALPSKKIVMQTRTNAIAWNPREPMNFSLANEDCNCYSYDMRNMEQAKCVHRDHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNAGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPRERKKQEYLDAVKE-RFKHLPEVKRIVRHRHLPKPIYKAASLRRTMADAEKKKEERKRAHSAPGTVVTVPLRKRRIVSEI 451          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIH9_ECTSI1.700e-31495.54Sof1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836C9W7_9STRA2.750e-21667.41WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A024UAB8_9STRA2.730e-19159.15Sof1 domain-containing protein n=11 Tax=Aphanomyce... [more]
A0A418B2S4_9STRA1.790e-18659.15SAM domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A482SJF6_9ARCH2.320e-18159.06Sof1 domain-containing protein n=1 Tax=archaeon Ta... [more]
M4C0L6_HYAAE5.140e-18159.28DDB1- and CUL4-associated factor 13 n=18 Tax=Peron... [more]
A0A6P4ZG13_BRABE3.070e-16854.48DDB1- and CUL4-associated factor 13 n=3 Tax=Branch... [more]
A0A2D4BDS0_PYTIN1.220e-16356.38Glycoside hydrolase, putative (Fragment) n=1 Tax=P... [more]
A0A7S0MFA3_9CRYP1.700e-16355.06DDB1- and CUL4-associated factor 13 (Fragment) n=1... [more]
W1P0N3_AMBTC1.410e-16252.98DDB1- and CUL4-associated factor 13 n=3 Tax=Magnol... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:2968526..2975838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score870.9
Seed ortholog evalue2.5e-250
Seed eggNOG ortholog2880.D7FIH9
Preferred nameDCAF13
KEGG koko:K11806
GOsGO:0000151,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030054,GO:0030331,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035257,GO:0035258,GO:0036211,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051427,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG0268@1,KOG0268@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-28_000340.1
Exons10
Model size2236
Cds size1347
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815399.6701999-UTR-P-fluviatile_contig10:2968525..29694141622815399.6701999-UTR-P-fluviatile_contig10:2968525..2969414Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 2968526..2969414 -
1693561758.239531-UTR-P-fluviatile_contig10:2968525..29694141693561758.239531-UTR-P-fluviatile_contig10:2968525..2969414Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 2968526..2969414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815399.6836267-CDS-P-fluviatile_contig10:2969414..29695011622815399.6836267-CDS-P-fluviatile_contig10:2969414..2969501Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2969415..2969501 -
1693561758.2607074-CDS-P-fluviatile_contig10:2969414..29695011693561758.2607074-CDS-P-fluviatile_contig10:2969414..2969501Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2969415..2969501 -
1622815399.6969237-CDS-P-fluviatile_contig10:2969985..29701001622815399.6969237-CDS-P-fluviatile_contig10:2969985..2970100Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2969986..2970100 -
1693561758.2725973-CDS-P-fluviatile_contig10:2969985..29701001693561758.2725973-CDS-P-fluviatile_contig10:2969985..2970100Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2969986..2970100 -
1622815399.7153149-CDS-P-fluviatile_contig10:2970626..29707521622815399.7153149-CDS-P-fluviatile_contig10:2970626..2970752Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2970627..2970752 -
1693561758.281269-CDS-P-fluviatile_contig10:2970626..29707521693561758.281269-CDS-P-fluviatile_contig10:2970626..2970752Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2970627..2970752 -
1622815399.7261603-CDS-P-fluviatile_contig10:2971360..29715541622815399.7261603-CDS-P-fluviatile_contig10:2971360..2971554Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2971361..2971554 -
1693561758.2885985-CDS-P-fluviatile_contig10:2971360..29715541693561758.2885985-CDS-P-fluviatile_contig10:2971360..2971554Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2971361..2971554 -
1622815399.736567-CDS-P-fluviatile_contig10:2971939..29720561622815399.736567-CDS-P-fluviatile_contig10:2971939..2972056Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2971940..2972056 -
1693561758.2966254-CDS-P-fluviatile_contig10:2971939..29720561693561758.2966254-CDS-P-fluviatile_contig10:2971939..2972056Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2971940..2972056 -
1622815399.7465365-CDS-P-fluviatile_contig10:2972486..29725801622815399.7465365-CDS-P-fluviatile_contig10:2972486..2972580Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2972487..2972580 -
1693561758.3051016-CDS-P-fluviatile_contig10:2972486..29725801693561758.3051016-CDS-P-fluviatile_contig10:2972486..2972580Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2972487..2972580 -
1622815399.7573402-CDS-P-fluviatile_contig10:2972993..29731691622815399.7573402-CDS-P-fluviatile_contig10:2972993..2973169Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2972994..2973169 -
1693561758.313289-CDS-P-fluviatile_contig10:2972993..29731691693561758.313289-CDS-P-fluviatile_contig10:2972993..2973169Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2972994..2973169 -
1622815399.766944-CDS-P-fluviatile_contig10:2974280..29744651622815399.766944-CDS-P-fluviatile_contig10:2974280..2974465Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2974281..2974465 -
1693561758.3233852-CDS-P-fluviatile_contig10:2974280..29744651693561758.3233852-CDS-P-fluviatile_contig10:2974280..2974465Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2974281..2974465 -
1622815399.776397-CDS-P-fluviatile_contig10:2975121..29752631622815399.776397-CDS-P-fluviatile_contig10:2975121..2975263Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2975122..2975263 -
1693561758.3334591-CDS-P-fluviatile_contig10:2975121..29752631693561758.3334591-CDS-P-fluviatile_contig10:2975121..2975263Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2975122..2975263 -
1622815399.7859287-CDS-P-fluviatile_contig10:2975727..29758381622815399.7859287-CDS-P-fluviatile_contig10:2975727..2975838Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2975728..2975838 -
1693561758.345642-CDS-P-fluviatile_contig10:2975727..29758381693561758.345642-CDS-P-fluviatile_contig10:2975727..2975838Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2975728..2975838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.851.1prot_P-fluviatile_contig10.851.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 2969415..2975838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.851.1

>prot_P-fluviatile_contig10.851.1 ID=prot_P-fluviatile_contig10.851.1|Name=mRNA_P-fluviatile_contig10.851.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=449bp
MKVKTISRVEESYTRDCKGDRVQVHRNRDPSLHPFEKAREYTRALTAVKL
DKMFAKPLVGALDGHGDGVFCSATSRRNLVQFLSGACDGEIRVWDLSRRS
CVWRAVGHRGFVRGLSVTPNGESFLSAGDDGIVKQWELGVASDLTQMPEP
TATWMGKSGGFKSLDHHWTDAKFATAGDSVDLWDHTRAEPTLSYQWGADS
NNCVRFNPAERCLLASTGSSREVCLYDTRATVPMRKVVLQMRSNAVAWNP
QEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFA
SGSYDRTVRIFPHRSGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTN
LRIWKANASEKLGKVVPREARKQEYRNSLKKSRYEHMPEVRRIAKHRHVP
KIIKKAAEAERVQRDKERRKVDNRIKHSKPGTVETVPERKKKIVKELT*
back to top

mRNA from alignment at P-fluviatile_contig10:2968526..2975838-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.851.1 ID=mRNA_P-fluviatile_contig10.851.1|Name=mRNA_P-fluviatile_contig10.851.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=7313bp|location=Sequence derived from alignment at P-fluviatile_contig10:2968526..2975838- (Porterinema fluviatile SAG_2381)
ATGAAGGTGAAGACGATTAGCCGCGTGGAGGAGTCATACACCCGAGACTG CAAAGGTGATCGGGTTCAAGTGCATCGAAATCGCGACCCCTCTCTTCATC CATTCGAGAAGGTATGTGGTGCCGCATCTTCCCTCCCCATGCGTGCAGTC GCATCCCTGTCGCCCTCCCTCTCATCCACCCAGCGCTCGTTTGTTGTCTG GATCTCGACGATCACACCCAATGTCAGGAGCCGGGAAGTTCGATGTGTGT TTTCGCCAATTGTCAATGATCGTGCTGAGGCGGCAAGGAAAATGCGCGCG TGGACCTCTTTTGTCTGTTCTGCATTGCCGGCGTGGGTAATTGACATGGA GCCAGACATCGAGGCAGTGTCTCCAGCCGGGGATGCCATGTACCAGACAT CAGACCAGCGTTTTTCTGCACGCGGAAGCCAAAACGTTTTGAGACTCACG ATGGTACCACACAAAAACTCGATTATGCGGTGGATCACTAGTTGCGGTTT ACGCTCGCCTTGAAGCTTGTTTGCTCTCCCATTCCCTCTTCCCGTTTCCC TCTTCTCACGACGCCCCCCACTCAGGCGAGAGAGTACACTCGAGCATTGA CGGCAGTGAAGCTGGACAAGATGTTCGCGAAACCATTGGTGGGGGCTTTG GATGGGCATGGGGATGGAGTGTTCTGTTCCGCCACCAGCAGGAGAAATCT CGTTCAATTCCTCTCAGGTACCAGAGTGATCAGATGGTTTTCGGAATTTT TGTCGCAACGATTTCATGCAACGCTGCCTTCTGTGTCGGAGAAATATGTT CACAGCTGTGCATTACAAGTACGAAAGTTCCTGCCCCTCTTCCGACGGCA GTCGCAATGTATCCTCGTTTTTCCGCAACGACGGGAATTGCTGATTTGGA ACTCACCAGTAGATTCCGCTTGCTATACTCCTTTCGAAACATCGCTCATA CTTCATCTTCGGAGCGGCAACGATTCTGACAAGGTTGCTGCGATGATGTT TTGTACCAGCGTGAAGCGGAAACTTTGTTGGGCGTTTTGTATTCATTGTA AGCACGTGGAAGTCACGCAGAGTCTTGGCATTTCAAGGCCATTTCCAAAA GGAGCACAAGGCTGGTTAAGGAGAAACGAAGGCTTTCTCACCTGGATTGA ATGCAGAACGATTTGAGAACGGGATATCTCCCCGCAACCGTTGCGATCGC CATGCGTGACGAAGGTGGGGGCACGAGTGCTACTTTTAATTGGCGGTCTC GTCGTTTTGAACAGCCTTGCCGTGTGTCCTTGGAAGCCGGGGCAAGAGGC CGTGTGCGCGCAAACTTTTCTTTCTATAACCAAATCACGCGAAGCGTTTT TTGCGCCCTGCCCCGTGTGCCAGGTGCCTGTGACGGGGAGATCCGGGTTT GGGACCTGTCCCGGCGCAGCTGCGTGTGGCGGGCTGTGGGGCACCGTGGC TTCGTCCGAGGGCTGTCGGTTACGCCTAACGGGGAGAGCTTCTTATCGGC GGGGGACGACGGGATAGTCAAGCAGTGGGAACTTGGAGTGGCCTCCGACC TCACGCAGGTTAGAAGGCGCGCTGTATGTCGCAGCTTGAAGGAGGCTGCC TGTGCTGCTGAGTAGTTCTTCGCGAAATTCCGAATGCCGCCGCTGTTCGG GGTCGATGCAATCCGTCCCCGGCCTTGTGTCAAGTGGGCGGGGTGCTCAT TTTTGTCGTCCGGAGATGCACTCGTGCGTGCGCGCCTATGATTCGGCCTT CGAAATTGCAGCCAGAATGGCGAGTCGCTTTCAAAGGCAATGCATCCTTT CATTCGCGGAAGGTTGTCCAGCGCGCAATCACATTCCTGGCAACAAACTG CTTCATCTATGCGCATATCGTTGCCGCGCCGTGTGCGGCGACAATTTCTT GTACCTGTTTTTTTTTTTTCTTTCGGCCAGACTTGTTTCGCCGAATCTCA AATCGCCCCGCGAGCTTGGACACAGCAAGCCGTTACATAGCCGTCGATCG CGCCAATTTGTGTCGGGCTTGTTGCTGCTGCTTGTCAGAGTGCAATGCCT CTCAGCATACCCACGTGTGCGAACGCCGCCAAAACACACCCCGTGCGATG ATTCCCTTAGACTTCAGGTTGTAGAGCGATGATTCCTTCACAGCACCGGT GTAGCGCGACGATGCCTTCAGTGCACACGCCTTCCGCCAGTCATCTGCCA TCCAGCTCCGTATCCTCTCCCTGACACTGCCCCATGAAAGCACGGAGAAC AAGGCGCCGCTCCCATTGTGTGACGGGCGTGCTGTACACTTTTGCCTCAC TCGGTGAACCCTACTGCTGCAGCGCAGCTGCCAAGCCGGCGAACTTTCTT TCGTCACACACGCGGTCCCTCAGATGAGGGCAGCAGCCGAACAGCATGCT TCTCGTTTACCTCAGAGCTGCTTCCCCGCGCTCTGCAGCAGGTGTAAACA CCCCTTTCCCTCCCCTTGCGGTGCTTGTGAATTTTAGTGCCACCGTTGTT TTAGGTTTTTGGGGAGTTCCGGCCAGCGAGCCAAGATGAATTTATTTTTT CAGGAGTGTGCCGCACCATGCACGAGTTCCAAGCATTACATGTGGTCTCA AGCTGGCGACTCGCTTGACTCATGGCCAACTCTGAACCCGTGGAGACCCG TCCTTTGCGTTGCCTGCAGATGCCGGAGCCTACGGCCACATGGATGGGCA AGTCGGGCGGCTTCAAGTCTCTGGACCACCACTGGACGGACGCTAAGTTC GCTACTGCGGGGGACTCGGTAGACCTGTGGGATCACACCAGGGCAGAGCC GACGCTGTCGTACCAGTGGGGAGCCGACAGCAACAACTGCGTGAGGTAAG GGACACCCCGTCTCCCTCGGCGAGCAAGATTTCGACAATTGTCCGACTTC TATTTATCCCCTTTGATGACCGTTGACGGTACACCCCCTTCTGCCACGGT ATCCCATATGTGTACCCTCGATTAGAAATATTTAGGGTTTGGTTACCCCC CCTCCATCGCAATGGTCTAACGACTACGGCATGCACGACTATGAGTACAA CTCCCCCCTCCATCGCGGGTAGCTCGTTGTTCTTTGCTCTTTGACCACGG GAGAGGAGTGCTGCCTGCGCTCGCGTTTGCGATCCTCGGCAGGCTCGTGG CACTCGCTGCGTTTTGTCTGACGCTTGCTCGGTAGACGTTTCTCCTCTCC ACTCTTTGTCGACGTTTGCCGTGCGGTGTTGTCAATATTCCTTCCTGCCT TGCCGCAGGTTTAACCCTGCCGAGAGGTGCTTGTTGGCGAGTACCGGCTC CAGCCGGGAAGTGTGCCTCTACGACACGAGGGCGACGGTGCCCATGCGAA AGGTACTGCGCATCGTCGTGTTGATGCAGGCCTTCGGGCCGTCCTACGGC GTCCGGTGCTTTTCCGCGGTTTGTAGGTCGTCGACGAGGTCTTTTTGCGG CAAGTGGACGAGCGAACTTCTGGATCCGCGCTGCCCTCTCGTGTGTGCCG GCCGATATGCCAATCCTTGTTTTGTAGTACACGCCGGAAAGCTGTTGCCG CGGTCCGCAATCGTACCGATACTGAAGCAGGCGCCCTGTAGACTCTCATA GCAGCGCAAAGTATCCTGCATTGAGCAGGCAGCGTCAAATATGCCGATAT ACGTTCCTCGCTCGTTTTCGATTTCCAACCCTTTGCACATTTTTCTCTCG GGTCTCCACGTCGCTCTCGACACTGCTGTGCTTGCTTCCCGCGACGGTCG CCGTCCGCACCATCTCCTTTCAACTGTCGCAGGTCGTCTTGCAAATGCGA TCGAATGCAGTGGCCTGGAATCCTCAGGAGCCCATGAACTTCGTGTGCGC CAATGAGGACACTAATCTCTACACATTTGACCTGAGGAATCTCAACCAGG TCAGTCACACGCGGCGGCACGACGCATCGCCAGATAGGCGGGGCGGCGGG CGTAGGCGACGGGCGGTTCGAACACCCTCCGGCGCGGCGGGAACGAGCCC GAGCCAGTGGCATAACTGCGCTCGACTCACCACTGGATTTGGTCTGCCGG TGGAAACCGAACATCGATGGAAACCGAACATCGATGAACGGCTTTCAGAT TCACAAACCTTGTGTTTCCGACGGTTCGTGCGTCGATTCGCCCCCTCTAC CTGTCTTCCCAAGAAATAGAAAGGGAACAAAGGCAAACCAAAAGACAATA TATCGAGTTTTCTCACTGACAACAACAACCTCTTACCCCACCGTACCCGC CCCTACCCGTCATTCCCTGCGTGCTTCTCTGCAGGCATTGATGATCCACA AGGACCACGTGTCCGCGGTGATGGACGTCTCCTTCTCGCCGACGGGGCAG GAATTCGCGAGCGGGTCCTACGACCGCACCGTGAGGATCTTCCCGCACCG TTCGGGCCGATCGAGAGAGGTCTACCACACTAAGCGCATGCAGCGCGTGT TCTGCGTGAACTTCAGCGCCGACGCGAGGTGTGCGCTGGGGGGAGAGCAG TGTTGCCAAATATTCGCGTGCAGGGATAACGTGGTTGGTGGCGGGTATTG GCCACCGAGCGCCAGCTAGCCAGCGCGTGGTGAGTTTCATTACTTTTGAT CAAATGGCTGGCGGTGTGTGGGACGTGTCCGACGGCTGCATCACGAACTA GACCGGCAGCGCCTGAAAGTCGAGACATGCACCCTCGCCCCTACGCAGGC TTCAGGTACGCGGCCCTGGAGACGAGGCCATTATTCCTAGCCGTGTGAGT TTGGGGCCCGCGATGATGAGCACGACGAAGGTCGATATCACAGGCCGCTG GACTTCTGTGCCGGGTCAAACCAAAAGTGCTTCTTTGTTGAGAGGGTCAC GTTTCTTCCTGTTTCCACATCGCGGGTTTTCTCTGCTAACACACTAACTC TTGTGCTTCCCAATGGCGAGCGCCGTAGCCTCATGCCCTGGGTGTACTCT TTGTGCCCGCTTTCTCGCTGCCTACACTTGACTTTGATTCTTACTTGTAT CTTATATGCACTTGACAAAGCACGCTTTGATGTGATCAATGGCGACATTT TGTCATGTCAATGTCCTTCGCACGTTGTCGGGGCAGGTTTGTCATGACCG GGAGCGACGACACAAACCTCCGAATATGGAAAGCCAACGCTTCGGAGAAG CTCGGGAAGGTGGTGCCGAGAGAAGCGAGGAAGCAAGAGTACAGAAACAG CCTGAAGAAGAGGTGATGCGAAGGCCCACGTTATCTTTGTTGCCTTTTGC TGGTGCGCGAAGCTTAAGGAATCCGATTCGTGTTTCGTTGGTGTTGGTTG ACCACGAAATGGGTAACAAGCGCGATTTGATTGGTGCGCGCTCGCCTGCA TATTGCACCACAATACCTGGCTGAGGGTCAACGCTCTTTGTGCAAGGCTT CTCTTATGGTATTGGCTGCCAGAGACGGGACCGAGGTGTTCGTGTATTGT TTGATGATGACCAAAGTTCGCGGAAGCCGGATTTACGCTAGTGTTGTGGG CGCTGTCTTGACAGCGTCATCAAAGACAGTCGACGTGACGAATGTGGTCA TTCATTTGTGTCCAAATTGGTTGGGAGCAGGGCACTGTGCAGTGATCCGG TGTTTTTTTCGGTCCTGTGACGTCTGTTGTGGGCGCCCTGAAGTCAGGAT CTGCATTTCTGTTGGGTTCCTGTCTCACGCCCTGACCCCTCGACAAAAGT GGCTGACTTTCACGACCTGTGCCTCGCCTGTACGAGAGCAGATACGAACA CATGCCCGAAGTGCGGCGCATTGCGAAGCATCGGCACGTGCCAAAGATCA TTAAGAAGGCGGCGGAAGCAGAGCGCGTGCAGCGGGACAAGGAGCGTCGG AAGGTGAGAAGCTGAACAGCATCATCAGACGTACTTTTTGGCTTTCTTGG GGCTTGTTTAGCTTTGGCTGCCGTCGTTTGACCTCGACTTTGATAATCGC TGCACCTCACCCTTTCAGCAAGGGTGAATGCCCACTTCTTCTACGTTTTT CTGCAATGCCAATAGAGCCATTGAAGTACTAAATACAAAGTTGTGATCCT TGGCCACCCTGGAGAATTCCGCCGCCGGTCTCTCATTTCAATCGCACAAG AATTTCAGCGTGCCATCTTCTCAAGGTATTCGCGACCAAGCGACGCGTAT GCTGTACTAGAAACGACACGCCTTTGCCGACGCCCGCGACGGGGCCTGGC TTTCGTAGAGCTGGGAGGATGACCGATTGAGGTACCGTGGCATCGGGCTG CTGCTCCTGCGCTGACCTATTCTGCGCACATGTGCTGAGGACGCCCTTCT CTTTCAATACGCACTTCACTCGCTTCTCTGTGACCAGGTGGATAACCGTA TCAAGCACAGCAAGCCGGGCACGGTCGAAACCGTACCAGAAAGGAAGAAG AAGATCGTGAAGGAGCTTACTTAGAGACAGCGGTGATTGTTAAGCTGCGC GAGTTCGCCCCGCGATGCACGTGGAGCGATCTGAGTCGCAGTGTGTCGCC ATTGGCGCATTCTCAGGCGATTTTGGAAGAGGCAGAACTGAAATCGCGTC GTAGAATTTGGTTGGATAAAACAAAGGTGATGCGGTGTTTCGAGAACTAT TCGGTAAAGGGGAGGAACGACGCTCGGGCTGGAAGCCGGTGTTGTTTGAA GAGGTCTGAGATTTCGAGTAGATCTGCCGCTCCTTCCTGAATCCACGTAT GTGAAGTGCTCCAGAGGCTCGCGGTTTGCTACTCGCGTATTGATTTGTTG TGAAAAAATTTGGCAACGAAGAAGGTGCTGCTACGTGCCTTTACGAAATG CACGGGGTGACATTGTTGTTCACCGTACGCAAGAGGTAGAAACCGGCCAA CTGACACGCCTTCAGTTCCGACGAAGGGAGGCCAAGGTTGGCCACTGCCC CACGCGCAGGCTCGATCGCGCGTGATTCCCTGTACTGAAATTTATGGCAA GATCTTATCGTAACGGCCCCTTGTCAGCCACGATCTCTCGCCCTTCTTTC TTGAAAGGGCCGATGTTTTACCCTACTTCTTTCCCCAAAATTTTCCCTTC AAGCAAAACTTTACATGGCTGTAAACAGCTTCGTTGGTTTGTTGAGTAGA ATGAGGCGGATAATATCCCAAAGCCCGCCTGAACGACAGCGAAAGAGTAG ACATCCCGACTCCGCCGAAAGCGGCCAGAGACCAGAGTTTCAGTTCCGTC TTCTCAGGATGTTACGGGTTTCGGGCATGTGTCAAGTGAGTAAAAGCCTC GGGGGCTTCGTCGCAACCCCTGAAAGGCCGGGAAACTCGGTCGCAGTTGT ATATGGAAACCGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig10:2968526..2975838-

>mRNA_P-fluviatile_contig10.851.1 ID=mRNA_P-fluviatile_contig10.851.1|Name=mRNA_P-fluviatile_contig10.851.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2694bp|location=Sequence derived from alignment at P-fluviatile_contig10:2968526..2975838- (Porterinema fluviatile SAG_2381)
ATGAAGGTGAAGACGATTAGCCGCGTGGAGGAGTCATACACCCGAGACTG
CAAAGGTGATCGGGTTCAAGTGCATCGAAATCGCGACCCCTCTCTTCATC
CATTCGAGAAGATGAAGGTGAAGACGATTAGCCGCGTGGAGGAGTCATAC
ACCCGAGACTGCAAAGGTGATCGGGTTCAAGTGCATCGAAATCGCGACCC
CTCTCTTCATCCATTCGAGAAGGCGAGAGAGTACACTCGAGCATTGACGG
CAGTGAAGCTGGACAAGATGTTCGCGAAACCATTGGTGGGGGCTTTGGAT
GGGCATGGGGATGGAGTGTTCTGTTCCGCCACCAGCAGGAGAAATCTCGT
TCAATTCCTCTCAGGCGAGAGAGTACACTCGAGCATTGACGGCAGTGAAG
CTGGACAAGATGTTCGCGAAACCATTGGTGGGGGCTTTGGATGGGCATGG
GGATGGAGTGTTCTGTTCCGCCACCAGCAGGAGAAATCTCGTTCAATTCC
TCTCAGGTGCCTGTGACGGGGAGATCCGGGTTTGGGACCTGTCCCGGCGC
AGCTGCGTGTGGCGGGCTGTGGGGCACCGTGGCTTCGTCCGAGGGCTGTC
GGTTACGCCTAACGGGGAGAGCTTCTTATCGGCGGGGGACGACGGGATAG
TCAAGCAGTGGGAACTTGGAGTGGCCTCCGACCTCACGCAGGTGCCTGTG
ACGGGGAGATCCGGGTTTGGGACCTGTCCCGGCGCAGCTGCGTGTGGCGG
GCTGTGGGGCACCGTGGCTTCGTCCGAGGGCTGTCGGTTACGCCTAACGG
GGAGAGCTTCTTATCGGCGGGGGACGACGGGATAGTCAAGCAGTGGGAAC
TTGGAGTGGCCTCCGACCTCACGCAGATGCCGGAGCCTACGGCCACATGG
ATGGGCAAGTCGGGCGGCTTCAAGTCTCTGGACCACCACTGGACGGACGC
TAAGTTCGCTACTGCGGGGGACTCGGTAGACCTGTGGGATCACACCAGGG
CAGAGCCGACGCTGTCGTACCAGTGGGGAGCCGACAGCAACAACTGCGTG
AGATGCCGGAGCCTACGGCCACATGGATGGGCAAGTCGGGCGGCTTCAAG
TCTCTGGACCACCACTGGACGGACGCTAAGTTCGCTACTGCGGGGGACTC
GGTAGACCTGTGGGATCACACCAGGGCAGAGCCGACGCTGTCGTACCAGT
GGGGAGCCGACAGCAACAACTGCGTGAGGTTTAACCCTGCCGAGAGGTGC
TTGTTGGCGAGTACCGGCTCCAGCCGGGAAGTGTGCCTCTACGACACGAG
GGCGACGGTGCCCATGCGAAAGGTTTAACCCTGCCGAGAGGTGCTTGTTG
GCGAGTACCGGCTCCAGCCGGGAAGTGTGCCTCTACGACACGAGGGCGAC
GGTGCCCATGCGAAAGGTCGTCTTGCAAATGCGATCGAATGCAGTGGCCT
GGAATCCTCAGGAGCCCATGAACTTCGTGTGCGCCAATGAGGACACTAAT
CTCTACACATTTGACCTGAGGAATCTCAACCAGGTCGTCTTGCAAATGCG
ATCGAATGCAGTGGCCTGGAATCCTCAGGAGCCCATGAACTTCGTGTGCG
CCAATGAGGACACTAATCTCTACACATTTGACCTGAGGAATCTCAACCAG
GCATTGATGATCCACAAGGACCACGTGTCCGCGGTGATGGACGTCTCCTT
CTCGCCGACGGGGCAGGAATTCGCGAGCGGGTCCTACGACCGCACCGTGA
GGATCTTCCCGCACCGTTCGGGCCGATCGAGAGAGGTCTACCACACTAAG
CGCATGCAGCGCGTGTTCTGCGTGAACTTCAGCGCCGACGCGAGGCATTG
ATGATCCACAAGGACCACGTGTCCGCGGTGATGGACGTCTCCTTCTCGCC
GACGGGGCAGGAATTCGCGAGCGGGTCCTACGACCGCACCGTGAGGATCT
TCCCGCACCGTTCGGGCCGATCGAGAGAGGTCTACCACACTAAGCGCATG
CAGCGCGTGTTCTGCGTGAACTTCAGCGCCGACGCGAGGTTTGTCATGAC
CGGGAGCGACGACACAAACCTCCGAATATGGAAAGCCAACGCTTCGGAGA
AGCTCGGGAAGGTGGTGCCGAGAGAAGCGAGGAAGCAAGAGTACAGAAAC
AGCCTGAAGAAGAGGTTTGTCATGACCGGGAGCGACGACACAAACCTCCG
AATATGGAAAGCCAACGCTTCGGAGAAGCTCGGGAAGGTGGTGCCGAGAG
AAGCGAGGAAGCAAGAGTACAGAAACAGCCTGAAGAAGAGCAGATACGAA
CACATGCCCGAAGTGCGGCGCATTGCGAAGCATCGGCACGTGCCAAAGAT
CATTAAGAAGGCGGCGGAAGCAGAGCGCGTGCAGCGGGACAAGGAGCGTC
GGAAGCAGATACGAACACATGCCCGAAGTGCGGCGCATTGCGAAGCATCG
GCACGTGCCAAAGATCATTAAGAAGGCGGCGGAAGCAGAGCGCGTGCAGC
GGGACAAGGAGCGTCGGAAGGTGGATAACCGTATCAAGCACAGCAAGCCG
GGCACGGTCGAAACCGTACCAGAAAGGAAGAAGAAGATCGTGAAGGAGCT
TACTTAGGTGGATAACCGTATCAAGCACAGCAAGCCGGGCACGGTCGAAA
CCGTACCAGAAAGGAAGAAGAAGATCGTGAAGGAGCTTACTTAG
back to top