mRNA_P-fluviatile_contig10.844.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.844.1
Unique NamemRNA_P-fluviatile_contig10.844.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig10.844.1 vs. uniprot
Match: D7FIH8_ECTSI (Coated vesicle membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH8_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 1.760e-70
Identity = 149/242 (61.57%), Postives = 181/242 (74.79%), Query Frame = 1
Query:  394 QIVGSRAKGTMVIFRRSSDNQLLYRKKDLQEDLFRVDATANGEYELCFINGDNTLMNELGHKDVPKDPSLVGLDALRREKKDKEQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYDVDYYGRNAGYKTFGFGLRLGKDVEDLESQADVASADMDRANFLKDEADVLVQILSIFNDHESFMRGREQSHRADVEETSKRLMWCTIIEAAVLVWVSWSQLSYIRRFFETKRVL 1119
            +++G   K TMVI ++  DN+LLYRK+DL ED FRVDAT +G+YELCFING    +  L +K VP+  S VGL+ALR+EK               XXXXXXXXXXXXXXXXXXXXXXX       D    +Y + +GYKTFGFGLRLGKDVEDL+S ADV+  D   A+FL +EAD+LV+ LS+FNDHES+MRGRE+ HR +V++TS RLMWCT +EAAVLVWVSW+QLSYIRRFFETKR+L
Sbjct:   65 EVLGYPVKNTMVILQKRGDNKLLYRKEDLGEDYFRVDATNDGDYELCFINGGEERIKSLRNKLVPEVNSFVGLNALRQEK---------------XXXXXXXXXXXXXXXXXXXXXXXELLDGLSDDMPSWYAKESGYKTFGFGLRLGKDVEDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL 291          
BLAST of mRNA_P-fluviatile_contig10.844.1 vs. uniprot
Match: A0A7S2DBK6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBK6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.510e-11
Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  796 NAGYKTFGFGLRLGKDVEDLESQADVASADMDRANFLKDEADVLVQILSIFNDHESFMRGREQSHRADVEETSKRLMWCTIIEAAVLVWVSWSQLSYIRRFFETKR 1113
            N G K    G    +D  DL S  D A A  +    + +    L Q L +  DH+ +MR RE+ HR+ V+ T+ +++W T++EAA+LV +S  Q+ YIR+FFE KR
Sbjct:   97 NQGDKDAPIGFAFREDAADLISDGDSAVATEENIVSMIEVGKDLSQGLDMLLDHQQYMRMREEHHRSAVQGTNSKVLWWTLVEAAILVSMSIWQILYIRKFFEVKR 202          
BLAST of mRNA_P-fluviatile_contig10.844.1 vs. uniprot
Match: A0A836CQY8_9STRA (Transmembrane emp24 domain-containing protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQY8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.290e-10
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  910 DEADVLVQILSIFNDHESFMRGREQSHRADVEETSKRLMWCTIIEAAVLVWVSWSQLSYIRRFFETKRVL 1119
            D ++ LV  L    DH+++MR REQSHR  ++ T++RL+  TI EA +LV ++  Q+SYIR+FFE KR++
Sbjct:    3 DASEELVNDLYTMVDHQTYMRQREQSHRETIDSTNRRLLLWTIAEALLLVSMAMWQVSYIRQFFEVKRMM 72          
BLAST of mRNA_P-fluviatile_contig10.844.1 vs. uniprot
Match: B8C202_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C202_THAPS)

HSP 1 Score: 62.0 bits (149), Expect = 2.000e-6
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  817 GFGLRLGKDVEDLESQADVASADMDRANFLKDEADVLVQILSIFNDHESFMRGREQSHRADVEETSKRLMWCTIIEAAVLVWVSWSQLSYIRRFFETKRVL 1119
            GF +R+      L+ +A     D    + L + +D L++ L    DH+ +MRGRE  H    + T  R++  T++EA VL+ +S+ Q+ Y+++FFETKR L
Sbjct:  125 GFAIRVLPPQRGLDGEA---GPDDRLTSHLIEMSDKLMEGLHTMADHQEYMRGRENRHSVLADTTFNRIVQWTVLEAVVLILISFGQVLYLKKFFETKRHL 222          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FIH8_ECTSI1.760e-7061.57Coated vesicle membrane protein n=1 Tax=Ectocarpus... [more]
A0A7S2DBK6_9STRA6.510e-1138.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CQY8_9STRA5.290e-1047.14Transmembrane emp24 domain-containing protein 2 n=... [more]
B8C202_THAPS2.000e-634.65Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:2890151..2897345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue3.5e-08
Seed eggNOG ortholog35128.Thaps22589
KEGG koko:K20347
KEGG TC9.B.188.1.2
EggNOG free text desc.emp24/gp25L/p24 family/GOLD
EggNOG OGs2XDE6@2836,KOG1692@1,KOG1692@2759
COG Functional cat.U
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04131
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptioncoated vesicle membrane protein
Ec32 orthologEc-28_000330.1
Exons8
Model size1650
Cds size1086
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.844.1prot_P-fluviatile_contig10.844.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 2890679..2897309 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815398.4505744-UTR-P-fluviatile_contig10:2890150..28906781622815398.4505744-UTR-P-fluviatile_contig10:2890150..2890678Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 2890151..2890678 -
1693561754.01904-UTR-P-fluviatile_contig10:2890150..28906781693561754.01904-UTR-P-fluviatile_contig10:2890150..2890678Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 2890151..2890678 -
1622815398.566254-UTR-P-fluviatile_contig10:2897309..28973451622815398.566254-UTR-P-fluviatile_contig10:2897309..2897345Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 2897310..2897345 -
1693561754.123841-UTR-P-fluviatile_contig10:2897309..28973451693561754.123841-UTR-P-fluviatile_contig10:2897309..2897345Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 2897310..2897345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815398.4665477-CDS-P-fluviatile_contig10:2890678..28908031622815398.4665477-CDS-P-fluviatile_contig10:2890678..2890803Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2890679..2890803 -
1693561754.0292575-CDS-P-fluviatile_contig10:2890678..28908031693561754.0292575-CDS-P-fluviatile_contig10:2890678..2890803Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2890679..2890803 -
1622815398.4808125-CDS-P-fluviatile_contig10:2891554..28916621622815398.4808125-CDS-P-fluviatile_contig10:2891554..2891662Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2891555..2891662 -
1693561754.0379603-CDS-P-fluviatile_contig10:2891554..28916621693561754.0379603-CDS-P-fluviatile_contig10:2891554..2891662Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2891555..2891662 -
1622815398.4936337-CDS-P-fluviatile_contig10:2892130..28922021622815398.4936337-CDS-P-fluviatile_contig10:2892130..2892202Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2892131..2892202 -
1693561754.0553842-CDS-P-fluviatile_contig10:2892130..28922021693561754.0553842-CDS-P-fluviatile_contig10:2892130..2892202Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2892131..2892202 -
1622815398.5101702-CDS-P-fluviatile_contig10:2893472..28935571622815398.5101702-CDS-P-fluviatile_contig10:2893472..2893557Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2893473..2893557 -
1693561754.067972-CDS-P-fluviatile_contig10:2893472..28935571693561754.067972-CDS-P-fluviatile_contig10:2893472..2893557Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2893473..2893557 -
1622815398.5227306-CDS-P-fluviatile_contig10:2894559..28946921622815398.5227306-CDS-P-fluviatile_contig10:2894559..2894692Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2894560..2894692 -
1693561754.076442-CDS-P-fluviatile_contig10:2894559..28946921693561754.076442-CDS-P-fluviatile_contig10:2894559..2894692Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2894560..2894692 -
1622815398.5347462-CDS-P-fluviatile_contig10:2895064..28951881622815398.5347462-CDS-P-fluviatile_contig10:2895064..2895188Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2895065..2895188 -
1693561754.0862603-CDS-P-fluviatile_contig10:2895064..28951881693561754.0862603-CDS-P-fluviatile_contig10:2895064..2895188Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2895065..2895188 -
1622815398.546652-CDS-P-fluviatile_contig10:2896472..28967791622815398.546652-CDS-P-fluviatile_contig10:2896472..2896779Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2896473..2896779 -
1693561754.102483-CDS-P-fluviatile_contig10:2896472..28967791693561754.102483-CDS-P-fluviatile_contig10:2896472..2896779Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2896473..2896779 -
1622815398.5554416-CDS-P-fluviatile_contig10:2897177..28973091622815398.5554416-CDS-P-fluviatile_contig10:2897177..2897309Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2897178..2897309 -
1693561754.1138139-CDS-P-fluviatile_contig10:2897177..28973091693561754.1138139-CDS-P-fluviatile_contig10:2897177..2897309Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2897178..2897309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.844.1

>prot_P-fluviatile_contig10.844.1 ID=prot_P-fluviatile_contig10.844.1|Name=mRNA_P-fluviatile_contig10.844.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=362bp
MGAFLAALLTTARVEAMTMDVVDGDDQCVVITASKGNTINANFEQQPSRL
GCSSGKLCILHAWDATGKFCVRRSTNRRDLLSSLVARALSMVGMANHDSA
SSLRPPFSAPRTLDSTRLVQIVGSRAKGTMVIFRRSSDNQLLYRKKDLQE
DLFRVDATANGEYELCFINGDNTLMNELGHKDVPKDPSLVGLDALRREKK
DKEQTPEQKKGGESDSAADQDDDDSTLSDLFLTDEEDDPSGDDDDYDVDY
YGRNAGYKTFGFGLRLGKDVEDLESQADVASADMDRANFLKDEADVLVQI
LSIFNDHESFMRGREQSHRADVEETSKRLMWCTIIEAAVLVWVSWSQLSY
IRRFFETKRVL*
back to top

mRNA from alignment at P-fluviatile_contig10:2890151..2897345-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.844.1 ID=mRNA_P-fluviatile_contig10.844.1|Name=mRNA_P-fluviatile_contig10.844.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=7195bp|location=Sequence derived from alignment at P-fluviatile_contig10:2890151..2897345- (Porterinema fluviatile SAG_2381)
GCAGATATCGGAGGATGGTGTTTTTTGCTGGGAATCATGGGTGCATTCCT GGCCGCGCTGTTGACAACAGCCCGCGTGGAAGCGATGACAATGGATGTGG TCGACGGCGATGACCAATGTGTTGTCATAACTGCCAGCAAAGGGAACACC ATCAACGCCAACTTTGAGGTACGAGCACCCGCACTGAGCGTGTTTCGAAC CTTTTTGGAGGAGTGCACCCCATCTATAGTGCGCTTACCGATGCTCAATT GCAAAGAGCGACTCGCGCGGTTGCAATCTTGAGCCTTTCTGCTCCTAAGG TTGTATTTCTCGCCACACGGCAAGCATAGACACCCCACCGCACGGTACCG ATGCTGGTCTGCTGAGGCTTAGGATAGGGCAGTCATGTTCAGCGTCTACG TTCTCAATGTAGAGAACACTTCAAGGTAGCGAGAGAGAGAGAAAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGGGAGCACCCGATTATGCCCCTTCGAAC TGTGGAGAAACCCGCGAAGCGCTCTGTGTGTCCGTTTGTCCGCATTGCAC GTTCTCCGAATCCCAGCAACAACCCTCCAGGCTTGGATGCAGCAGCGGAA AACTGTGCATCCTGCATGCGTGGGACGCTACTGGGAAATTTTGTGTCCGT CGTTCCACGAATCGACGAGACTTGCTCTCATCGCTGGTTGCGCGCGCGCT CTCGATGGTCGGCATGGCCAACCACGATTCCGCCTCATCGCTCCGCCCGC CCTTCTCTGCCCCCCGTACCCTCGACTCCACGCGTTTGGTGCAGATCGTA GGGTCTCGTGCCAAGGGTACCATGGTTATATTTCGGCGGAGTAGCGACAA TCAACTTCTCTACAGAAAAAAGGGTAAGATTTGCCTGTTGTTTCTTTTTC TCTCCCTTCAAAGATGCTGACTGCCGTACTACCTCGATGTCGATATTGTG GTGCTGCAGCTCCGACTAGAGTCGGACAGTTTCACAACAGGTTGTTGCGG GCGGCGCAGAGCACATTGAGTGGCGCATTCACTGCGTGCACCCTCAAGAT CTTTGGCCACCTGAACCGTCCTTGAATCAAGATCTATGTCACGGTCGGTG TCGTGAAACAAACGGCAAAACTTGCCACGAAGGCACGGCAGGCCTCGATC GGCTCTTGTGTTACCCGCGTAAACGATTGATCTGTCCTACGGCCTCGCTC TCTGTGGTTGACAAGTAACTTGCCAGGCAAGCGGAGATGCTGTTGATTCC AGATTCGTTTCGCATATCTGAAAGCACAGCTAACGTCGGGCGGCAACTCG AAGCCGAAGCGGTTGATTCCGTCCCTCGGGACTTGTCTGGACCAGAGACG AGTGCATCGAAGGCTTGGCAGCATTGACAGGGTTAGGCAAATTTTGGATA AATGGTGCAAGGGTAGTTCCAGCGAGGCCTTCTGATACGCCTCATGGAGC CTCTTTTGTGAACGAGTCGTATCAGCGTTACTCCCAAATTGACTTTCAGC GCCGTGCTGGTGCCGTCGAGAGCGTCCCGTGTTTTTTGTTGAAGCGAAAC GTCATGGGATTTTGTCTTGCGGATTGCCCCTATTTGGATCGCAAAACCGC AGTCGAAGCTGGTGAGAAAGGTTATCGCTGATTTCTGTAGCGAAGCAATC TTTAAGCCGGTCCCGTGTCCTGGTCCTTTGCAGCACACAAACCGAGTCCG TCATCGCGCATGCAACCGGCAACACTGGCGATGATGATGCCCGTTACTGT TATAGTAGCAGCATGGTACAAGTGGGTCGGGTGGAAAGGCGAGGAAACCA TTGAAATCTTACTTCATAGCAGCAACGCTTTCACCAAAACGATCGAAATT TTCGCCCATGAACAAATCGAAGGCATGTCGAACAAAAGCAGAAATTTTTA ACACAGGAAGTGGACGCTCTGCACGCACCGCCCGCGGCACAAGGTTCCCA AGAATTCGGTCTAAAATGCCCCCTCGCATCATCTCTGCGCATCTCTCACA TCCGCGAGGAAAGTAGGGTTACATACAGCGAGGCTGTGTTTTCCCCGAAG AGCGGATATGTCGCGTTGTCGTTCGTGCGCGACGCCAAGGCCCATATTTA TCCGAGAATCCCGAGCCTCATACACACGTTGCGCGACATCGCCGTTCCTT GCGGCAGATCTGCAAGAAGATCTTTTCAGGGTTGATGCCACCGCGAATGG AGAGTACGAGCTTTGCTTCATCAACGGAGACAATACGCTCATGAACGAAC TGGGCCACAAGGACGTCCCCAAGGACCCCAGGTACGATTTACGTGCGTTT GGTCTTCTCATAGATTCGCCCACATTTTTTCCTTCCTGCTGTCGAATCCT GGTTCAGCTTTTTAAGTTTGTTACACTACCTGTCCTTGTCCCCCATCCCC ACCTCTTAGTCGGGCACCTCCTTTTGCAGCTAAAGTGCTGTTGAGGTTCA CATCATTTTTGCCTGGAGTGCAAAACGAACCGGTGTGATGGAAGTGATAA CGTGGAGGAACCGTGCAAGAATGCCTTCTTTTTTCAAGAGGAAGGCCTCT TGTTTTTTTTCAAGGTATGTACGCTGCTGCTCCTTCTTGGTGTGCTTTCA CGTCAACGTACGTGCCGCCGGGGTCTCCTGATTTATTTGAAAACGGCCCG CAGTTTGGTTGGCCTCGACGCCCTCCGCCGAGAGAAAAAAGACAAGGAAC AGACGCCCGAGCAGAAGAAAGGAGGAGAATCTGATTCGGCCGCGGACCAA GATGATGACGACAGCACCCTCTCAGATTTGTTTCTGGTGAGGAAAGCGAG CTAGACTTGTATCCTGTCACTCTTCTTGCTAATCGCATCTGCCTAGATTG TAGACTATATCGGGTCACCATCTAGAATTGACATAGGATATGAGTAGTGT TAATTCCAAAGCCTTCGACCAATCTGTAAACGGAGGTATGATGCGGAACG ATCGACGCCACAGAATTCATTAAAGCTGGTGCCGGCGCAGCAATCGCTCT AAGCATATCCTGATACGAAACGGTACATAGGTGGCGCCGGCCCGGCATGA AAATCTTTGTTTCACACGGAAGTTTGCGTCGACTCGCGAGGTCGATATCG AGCAGCAATAACCGCAATATCACAAAGTGACTTCGTGCGGGCGCTCACCC GACCGAGCGCTGAGGGAGTGATCGTCCTGCTGGTCTTGGAATATCGAGCG GCGACGTTGAAGAAGCGATAATATGATCCTCCGTCGCTCTCGCCTCTGGA GCTCGTACAGCTTTCGGCGGTCTAGCCACCGAATATTGTGTACACATCTC CAAAGATCCGCGTTTCGCTGTGTGAATCGGTTGGCGTGTCGTCCTCGTTG TTGAGGACGGAGCTTTGAGCATGTGGAAGGTGAACATCCGCGACTGCCCC ATGAATCGCCAAATGTACAGAGCAAACCCCTCTCGCGCCTGAAAATTTGT CGTACCCCTTTTCGTTGAGAAACTAATCCATTTTGTTCCGAGGGGGGCCA CCATGGGGGAGACGACTGTCCACAGACGCAATATTTTTCTCATTCGCGAA GCTGCGCCACACGCCTCGCCGCTGATCGTCGGAGTTTCCCATTCAACAGG CTTTGCGAACAACGTTCACCTCGATGAGGCGAGAGGGATGCTGCCCTGAA GTACAGAATGAATAGCAGTGGCTGCGCTATTTTATTATGTTGATGTCTCT CCACCCCTTGTGCCATCACTAACTCTTCTCCTCCCTGGCGTTTCTTACAC CGACGCTGCACCTCGTTTGTCACATATGCGTTGATTAGACTGATGAGGAG GACGATCCAAGCGGGGATGATGATGATTACGATGTTGACTATTACGGCAG GAACGCGGGCTACAAAACATTCGGTGAGCTTGCTTTCTTACTCATATTGT CATGTTTGCATCTCATGTTTGCATCCCAGCCGCCGTGCAGTGCCCCCGAG TTCTTGCCGTAGATGTTGAGAGGAAGGCTTGAAGGGGATCAGCAAAGAAC CATTAAATACCCTGAACCCCTCATGCTGAAAACCCGCAGATGACGAGCAC GTCGTTGTCACGAGCGCGAGAGGTCGCGACTCATTCTAATCTTATGCCTG TGCCGCCTGCTCCTGCTGTAGGGCTTCTTTCCGACGCCGATGTCGTGTAA GTAGCTATCCGCTCCTTGTAACTACGTTTTGATTTTTCGAATGGAGCGCT CAGCCGTCGTGAAAGGTTGGCTTAACTGACATGCCAGGATTTCGTCCCTA GGCTCCCACGCGCCGTAGTGTCGACCACGACAAGGAACGGCCCCACTGCG CTGGGCTGTTTCCAAATACGCGGTAGCATGTACATTACTTCAGCGGACGC TCTCTCAATGGCGCAATGCCCCGTCATTGACCCCCAGAAGGCGACCAATC ATTCTTTGCAGACAGGTGTCGTCGGGTAGCTCAAAGGGGGGTGGATTATC GATGAAGGTATTGTGCTTCTAGAAAGCGCCCAGGCACAAATCGTAGCTGC ATGTAAGGAGAAGGTGGCCCCGAACCCCGGTTCCCCGTTTGGTCAGCTCT TATGCTTTTGCGAAAATCACCGAAAGGCCCGTGGTTGGTCAGCGTTGGTC ACTGGGGACGGGCACATTTTCCACTTATGTAATCGCCCTGGGGCTGTTGC CGAAAGGAACACGGGCTTGCTAGAATGAAATGGCATTCAGGTGGACCCAG AGTGTCAGCACGGGGAGGACGTTCAGTCTGACCGAGTTTAATGCCAATTT TGGCACTGTATGGTGTGTCTTGGTTGCCGGGCCTCTCCGTTGCTTGAACG GGGCGAGGTTTAAAAGAAGTTCGCACGACACAAAAATGCCGCTAAAAATG CAGGGGGGAATTTAAGAGAATGGGCTCGCTATTCGTTTTGCGCAAGGGTT ATCGATTCCCGATTTCCTCCCGTCTACTTGGCGTGTTGCGGGATATGTGC TGCTCCTCACGCTGCTGAAACTATTTCGGCACTAGGTTGTGTGAAGAGGA CACTGCTGGTATGTTGGTCCTGAAAATGGATTGAACTCCAACCCCTCCCA CTATCTTCGTTTGGACACTCATTATCAGGCTCAACTCAATGGCCATTCCC GCATTCTCGGACGCGCCGACTCTCCTTTCTGTCGATGATTCAGGGTTTGG ACTCCGGCTGGGAAAAGATGTGGAGGACCTGGAGAGTCAGGCGGACGTAG CATCAGCCGACATGGGTAATATTTTGTAGATTGTGTCACTCCAGAAGGGC GCCGCAACTTGTGTGCGCGAAATAGATGCCCCTCGACATGTTGAGTTTTG GAGCTCGATACTTCATCCAGAGCGACGGAGGCGTGGAAGCATTGTTAATG TCGCCAAGGAGCAGGCGAAGGCGTGCGGGTCACCGCTTGCACACTACCTG CTGTTGAGAAATCGTGGCGTCAACCTTCGTGCTATTCACGTTACTTGCTG CGCCAGAAGTCGCTCAAAGGAGAAAACGTCCCATGCGTCGCTGTCTTCCT ACTTCGGCCCAGCTTTTCCATTTTTTGTTGAGTCTCTCGTTAGGTTCTCG CTCGCTTCCCAAAACCTGCTGTACTTTCTGCCATTTGTGCCCCTCCACCA CAAAGCGTCTATTTTCCTCGACGCTCGCCCCCTAACCCCCCTCGCTCTTT CTCGCTCCCTTCAATATTCCGCGTATGGGACAGACCGTGCAAATTTCTTG AAGGACGAGGCCGATGTCCTGGTGCAAATCCTGTCCATTTTCAACGACCA CGAGAGCTTCATGAGAGGCCGCGAACAGTCTCATCGCGCAGGTGAGTATT TCTCTCGCCTACTCTCGTGGCAGACTTTGTTCGCCAGCGGATTGTGATGA CCCCGGGCCAATGTGAGACGAAATAACTCAGGTTGGGTTCGAGTCGGGAT CGAGAGGGAGATATGATACGACACTTCGGCCACAGGCTTCCCCTGTGGTT GATTCCGTGCGTCACCTGATGCTTGTTCGCCCTTGGAAGACTCCTTTCAC CAACATTAGTGTGTGCGCTGCCTTCTGGATGGCCTTACACCGAATTCCTG ATACAGCTTCGACGTAGATATAAATGTACATGTATGATAATCGTTGTATG CAATGCTTTTTCGATAGCCCGCTTCTGTGCTTCCGTGCGTTTGATCAAGC TTGATCCAATCGATATTTTCATCACCACACGAACGCTGCGAAGCAATGGT TTCCCTTTCTTCAAGCACCATATTGTTAACCGCCCCTCATGATGCAGTAT GGGTTCAGGTTGGAATGTCCAAGTTGACACCGTCGTGTTTCATATCTGCC GCAGGGTGGCCAATGATACGGCTGAGCTCGTGTTCGTGTGTTCTCCCTGG GGACCGAATTGTTGCTCCTACGATCAGCAGTCATCACAGCAGTGCAGCAA GTTGGAATGGAAATTTCTATGGTGTGCTGCACTCTCTCGCCAGTCCCTCT CCTCGCGCTTGTTTCCACTATGACTTTCCCCCGCCAATCGCGCGTCGCGT CTCTTCTTTACGACGTGTCATCACTTGCATGTTGCGGAGCAGACGTGGAG GAGACCAGCAAGCGCCTGATGTGGTGCACGATCATAGAAGCTGCTGTGCT GGTGTGGGTGTCATGGTCTCAGCTTTCGTACATTCGCCGCTTTTTCGAGA CCAAGCGTGTTCTCTAGTGTTTGGACCGCAAAGGAGTTTGCAGCACCAAA TCGTGTGTTGGCGTGCACACAGGACGTGTGCATATGTTCGGCTTCTCGGT AGCGCTCGGTAGACTACCTTGGTCGGTCTGTTCTCGATAAATGAAAACGG TGGCCATACCGAAGGTAGTATCTCGTCTCGCCGTCGAGGGCAGCCTCGCG CGGGATTCGTTTCTGCGCCTCCTTTCAAGTGGCATACCCAGCGAATGGCC ACGGCGGCCACAAACTATTGTATTCCCGCGTGAGTTCATCGTGCACTCTG CTAGTATTTATTGCGCGCAAGGAGATCCGGTCGGTTGAGACAAAGTGTAG ACCACACAACATACTTCGTGAAATATCCCGCGTTTAGAGCAAAGGGCGCT ATCATAGCCCAAGCCATGTTGCTGGTTACATCATGCGGCGGCGCCGGGCG CTGAGTCACTCCCCTTATTGAGCTGCACATCTCATGGGCGTGTCTGGATT CCTCCGGGCGCGCGCAAACGGCACAGCTCCGCTCTCGGTTCGAAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig10:2890151..2897345-

>mRNA_P-fluviatile_contig10.844.1 ID=mRNA_P-fluviatile_contig10.844.1|Name=mRNA_P-fluviatile_contig10.844.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2172bp|location=Sequence derived from alignment at P-fluviatile_contig10:2890151..2897345- (Porterinema fluviatile SAG_2381)
ATGGGTGCATTCCTGGCCGCGCTGTTGACAACAGCCCGCGTGGAAGCGAT
GACAATGGATGTGGTCGACGGCGATGACCAATGTGTTGTCATAACTGCCA
GCAAAGGGAACACCATCAACGCCAACTTTGAGATGGGTGCATTCCTGGCC
GCGCTGTTGACAACAGCCCGCGTGGAAGCGATGACAATGGATGTGGTCGA
CGGCGATGACCAATGTGTTGTCATAACTGCCAGCAAAGGGAACACCATCA
ACGCCAACTTTGAGCAACAACCCTCCAGGCTTGGATGCAGCAGCGGAAAA
CTGTGCATCCTGCATGCGTGGGACGCTACTGGGAAATTTTGTGTCCGTCG
TTCCACGAATCGACGAGACTTGCTCTCATCGCTGGTTGCGCGCGCGCTCT
CGATGGTCGGCATGGCCAACCACGATTCCGCCTCATCGCTCCGCCCGCCC
TTCTCTGCCCCCCGTACCCTCGACTCCACGCGTTTGGTGCAGATCGTAGG
GTCTCGTGCCAAGGGTACCATGGTTATATTTCGGCGGAGTAGCGACAATC
AACTTCTCTACAGAAAAAAGGCAACAACCCTCCAGGCTTGGATGCAGCAG
CGGAAAACTGTGCATCCTGCATGCGTGGGACGCTACTGGGAAATTTTGTG
TCCGTCGTTCCACGAATCGACGAGACTTGCTCTCATCGCTGGTTGCGCGC
GCGCTCTCGATGGTCGGCATGGCCAACCACGATTCCGCCTCATCGCTCCG
CCCGCCCTTCTCTGCCCCCCGTACCCTCGACTCCACGCGTTTGGTGCAGA
TCGTAGGGTCTCGTGCCAAGGGTACCATGGTTATATTTCGGCGGAGTAGC
GACAATCAACTTCTCTACAGAAAAAAGGATCTGCAAGAAGATCTTTTCAG
GGTTGATGCCACCGCGAATGGAGAGTACGAGCTTTGCTTCATCAACGGAG
ACAATACGCTCATGAACGAACTGGGCCACAAGGACGTCCCCAAGGACCCC
AGATCTGCAAGAAGATCTTTTCAGGGTTGATGCCACCGCGAATGGAGAGT
ACGAGCTTTGCTTCATCAACGGAGACAATACGCTCATGAACGAACTGGGC
CACAAGGACGTCCCCAAGGACCCCAGTTTGGTTGGCCTCGACGCCCTCCG
CCGAGAGAAAAAAGACAAGGAACAGACGCCCGAGCAGAAGAAAGGAGGAG
AATCTGATTCGGCCGCGGACCAAGATGATGACGACAGCACCCTCTCAGAT
TTGTTTCTGTTTGGTTGGCCTCGACGCCCTCCGCCGAGAGAAAAAAGACA
AGGAACAGACGCCCGAGCAGAAGAAAGGAGGAGAATCTGATTCGGCCGCG
GACCAAGATGATGACGACAGCACCCTCTCAGATTTGTTTCTGACTGATGA
GGAGGACGATCCAAGCGGGGATGATGATGATTACGATGTTGACTATTACG
GCAGGAACGCGGGCTACAAAACATTCGACTGATGAGGAGGACGATCCAAG
CGGGGATGATGATGATTACGATGTTGACTATTACGGCAGGAACGCGGGCT
ACAAAACATTCGGGTTTGGACTCCGGCTGGGAAAAGATGTGGAGGACCTG
GAGAGTCAGGCGGACGTAGCATCAGCCGACATGGGGTTTGGACTCCGGCT
GGGAAAAGATGTGGAGGACCTGGAGAGTCAGGCGGACGTAGCATCAGCCG
ACATGGACCGTGCAAATTTCTTGAAGGACGAGGCCGATGTCCTGGTGCAA
ATCCTGTCCATTTTCAACGACCACGAGAGCTTCATGAGAGGCCGCGAACA
GTCTCATCGCGCAGACCGTGCAAATTTCTTGAAGGACGAGGCCGATGTCC
TGGTGCAAATCCTGTCCATTTTCAACGACCACGAGAGCTTCATGAGAGGC
CGCGAACAGTCTCATCGCGCAGACGTGGAGGAGACCAGCAAGCGCCTGAT
GTGGTGCACGATCATAGAAGCTGCTGTGCTGGTGTGGGTGTCATGGTCTC
AGCTTTCGTACATTCGCCGCTTTTTCGAGACCAAGCGTGTTCTCTAGACG
TGGAGGAGACCAGCAAGCGCCTGATGTGGTGCACGATCATAGAAGCTGCT
GTGCTGGTGTGGGTGTCATGGTCTCAGCTTTCGTACATTCGCCGCTTTTT
CGAGACCAAGCGTGTTCTCTAG
back to top