mRNA_P-fluviatile_contig10.844.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig10.844.1 vs. uniprot
Match: D7FIH8_ECTSI (Coated vesicle membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH8_ECTSI) HSP 1 Score: 237 bits (604), Expect = 1.760e-70 Identity = 149/242 (61.57%), Postives = 181/242 (74.79%), Query Frame = 1
Query: 394 QIVGSRAKGTMVIFRRSSDNQLLYRKKDLQEDLFRVDATANGEYELCFINGDNTLMNELGHKDVPKDPSLVGLDALRREKKDKEQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYDVDYYGRNAGYKTFGFGLRLGKDVEDLESQADVASADMDRANFLKDEADVLVQILSIFNDHESFMRGREQSHRADVEETSKRLMWCTIIEAAVLVWVSWSQLSYIRRFFETKRVL 1119
+++G K TMVI ++ DN+LLYRK+DL ED FRVDAT +G+YELCFING + L +K VP+ S VGL+ALR+EK XXXXXXXXXXXXXXXXXXXXXXX D +Y + +GYKTFGFGLRLGKDVEDL+S ADV+ D A+FL +EAD+LV+ LS+FNDHES+MRGRE+ HR +V++TS RLMWCT +EAAVLVWVSW+QLSYIRRFFETKR+L
Sbjct: 65 EVLGYPVKNTMVILQKRGDNKLLYRKEDLGEDYFRVDATNDGDYELCFINGGEERIKSLRNKLVPEVNSFVGLNALRQEK---------------XXXXXXXXXXXXXXXXXXXXXXXELLDGLSDDMPSWYAKESGYKTFGFGLRLGKDVEDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL 291
BLAST of mRNA_P-fluviatile_contig10.844.1 vs. uniprot
Match: A0A7S2DBK6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBK6_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 6.510e-11 Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 1
Query: 796 NAGYKTFGFGLRLGKDVEDLESQADVASADMDRANFLKDEADVLVQILSIFNDHESFMRGREQSHRADVEETSKRLMWCTIIEAAVLVWVSWSQLSYIRRFFETKR 1113
N G K G +D DL S D A A + + + L Q L + DH+ +MR RE+ HR+ V+ T+ +++W T++EAA+LV +S Q+ YIR+FFE KR
Sbjct: 97 NQGDKDAPIGFAFREDAADLISDGDSAVATEENIVSMIEVGKDLSQGLDMLLDHQQYMRMREEHHRSAVQGTNSKVLWWTLVEAAILVSMSIWQILYIRKFFEVKR 202
BLAST of mRNA_P-fluviatile_contig10.844.1 vs. uniprot
Match: A0A836CQY8_9STRA (Transmembrane emp24 domain-containing protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQY8_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 5.290e-10 Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 910 DEADVLVQILSIFNDHESFMRGREQSHRADVEETSKRLMWCTIIEAAVLVWVSWSQLSYIRRFFETKRVL 1119
D ++ LV L DH+++MR REQSHR ++ T++RL+ TI EA +LV ++ Q+SYIR+FFE KR++
Sbjct: 3 DASEELVNDLYTMVDHQTYMRQREQSHRETIDSTNRRLLLWTIAEALLLVSMAMWQVSYIRQFFEVKRMM 72
BLAST of mRNA_P-fluviatile_contig10.844.1 vs. uniprot
Match: B8C202_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C202_THAPS) HSP 1 Score: 62.0 bits (149), Expect = 2.000e-6 Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 1
Query: 817 GFGLRLGKDVEDLESQADVASADMDRANFLKDEADVLVQILSIFNDHESFMRGREQSHRADVEETSKRLMWCTIIEAAVLVWVSWSQLSYIRRFFETKRVL 1119
GF +R+ L+ +A D + L + +D L++ L DH+ +MRGRE H + T R++ T++EA VL+ +S+ Q+ Y+++FFETKR L
Sbjct: 125 GFAIRVLPPQRGLDGEA---GPDDRLTSHLIEMSDKLMEGLHTMADHQEYMRGRENRHSVLADTTFNRIVQWTVLEAVVLILISFGQVLYLKKFFETKRHL 222 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig10.844.1 >prot_P-fluviatile_contig10.844.1 ID=prot_P-fluviatile_contig10.844.1|Name=mRNA_P-fluviatile_contig10.844.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=362bp MGAFLAALLTTARVEAMTMDVVDGDDQCVVITASKGNTINANFEQQPSRLback to top mRNA from alignment at P-fluviatile_contig10:2890151..2897345- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig10.844.1 ID=mRNA_P-fluviatile_contig10.844.1|Name=mRNA_P-fluviatile_contig10.844.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=7195bp|location=Sequence derived from alignment at P-fluviatile_contig10:2890151..2897345- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig10:2890151..2897345- >mRNA_P-fluviatile_contig10.844.1 ID=mRNA_P-fluviatile_contig10.844.1|Name=mRNA_P-fluviatile_contig10.844.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2172bp|location=Sequence derived from alignment at P-fluviatile_contig10:2890151..2897345- (Porterinema fluviatile SAG_2381)back to top |