mRNA_P-fluviatile_contig10.834.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.834.1
Unique NamemRNA_P-fluviatile_contig10.834.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig10.834.1 vs. uniprot
Match: D7G9D3_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9D3_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 1.790e-95
Identity = 139/148 (93.92%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:  220 ASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPETYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNDSPLNTEAAQLWADQEKYRQVCRLKFQEG 663
            ++GGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATL GSEDTAYEGLTYKLKLVFP+TYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNN+SPLNTEAAQLWADQ+KYRQVC+ K+QEG
Sbjct:    3 SAGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEG 150
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BLAST of mRNA_P-fluviatile_contig10.834.1 vs. uniprot
Match: I1HED7_BRADI (UBC core domain-containing protein n=11 Tax=Pooideae TaxID=147368 RepID=I1HED7_BRADI)

HSP 1 Score: 208 bits (529), Expect = 9.360e-62
Identity = 98/164 (59.76%), Postives = 121/164 (73.78%), Query Frame = 1 
Query:  175 PTYPPSALNPHATAMASGGD---VTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPETYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNDSPLNTEAAQLWADQEKYRQVCRLKFQ 657
            P   P+A+   A A A G D   V RRLQ ELM +MMG DPG SAFP  DN+F+W  T+ GS  TAYEG +Y+L L FP  YPYK P + FETPCFHPNVD HGNICLDIL++KWSSA+ V TIL S++SLL +PNNDSPLNT+AA LWA+QE++R++    ++
Sbjct:   16 PAAAPAAVGKQAPAAARGADGQSVVRRLQSELMALMMGGDPGVSAFPEGDNIFQWVGTIDGSAATAYEGTSYRLALSFPSDYPYKPPKVKFETPCFHPNVDTHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAALWANQEEFRKMVEKLYK 179
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BLAST of mRNA_P-fluviatile_contig10.834.1 vs. uniprot
Match: A0A2R5GGQ9_9STRA (Ubiquitin-conjugating enzyme E2 C n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGQ9_9STRA)

HSP 1 Score: 205 bits (521), Expect = 6.640e-61
Identity = 96/151 (63.58%), Postives = 117/151 (77.48%), Query Frame = 1 
Query:  217 MASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPETYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNDSPLNTEAAQLWADQEKYRQVCRLKFQEGQQ 669
            +ASG  VT+RLQQELM +M   D  A+AFP+ DNLF W+  ++G+ +T YEGL+YKL + FP  YPY AP I F TPCFHPNVD HGNICLDILKEKWS+ +SVSTIL SLRSLL+DPNNDSPLN  AAQLW +QE+Y++V   K+ E  +
Sbjct:    6 IASGESVTKRLQQELMQLMRDGDSNATAFPDGDNLFSWSGNINGAPETVYEGLSYKLHIDFPSNYPYTAPTIRFVTPCFHPNVDAHGNICLDILKEKWSATYSVSTILTSLRSLLSDPNNDSPLNGVAAQLWDNQEEYKRVLLKKYDEDSK 156
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BLAST of mRNA_P-fluviatile_contig10.834.1 vs. uniprot
Match: A2ZRP5_ORYSJ (Os01g0273100 protein n=11 Tax=Oryzeae TaxID=147380 RepID=A2ZRP5_ORYSJ)

HSP 1 Score: 201 bits (511), Expect = 6.170e-59
Identity = 91/148 (61.49%), Postives = 113/148 (76.35%), Query Frame = 1 
Query:  214 AMASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPETYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNDSPLNTEAAQLWADQEKYRQVCRLKFQ 657
            A A G  V RRLQ ELM +MMG DPG SAFP  DN+F W  T++GS  TAYEG +Y+L L FP  YPYK P + FETPCFHPNVD HGNICLDIL++KWSSA+ V TIL S++SLL +PNNDSPLNT+AA LW +Q+++R++    ++
Sbjct:   41 AGAEGQSVVRRLQSELMALMMGGDPGVSAFPEGDNIFSWVGTIAGSAATAYEGTSYRLSLAFPGEYPYKPPKVRFETPCFHPNVDAHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAALWPNQDEFRKMVEKLYK 188
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BLAST of mRNA_P-fluviatile_contig10.834.1 vs. uniprot
Match: A0A5J4Y1P3_9CHLO (Ubiquitin-conjugating enzyme E2 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y1P3_9CHLO)

HSP 1 Score: 200 bits (509), Expect = 7.060e-59
Identity = 88/145 (60.69%), Postives = 114/145 (78.62%), Query Frame = 1 
Query:  235 VTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPETYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNDSPLNTEAAQLWADQEKYRQVCRLKFQEGQQ 669
            VT+RLQ ELM +M   DPG SAFP+ D+LF W  T+ G+ DT YEG++YKL L FP  YP+KAP + FETPCFHPN+D++GNICLDILK+KWS+A+SV T+L S++SLL +PNNDSPLN+ AA+LW  QE Y++V   K+ E Q+
Sbjct:   30 VTKRLQSELMSLMSATDPGVSAFPDGDSLFSWVGTIQGAADTVYEGMSYKLSLKFPTDYPFKAPTVKFETPCFHPNIDQYGNICLDILKDKWSAAYSVRTVLLSIQSLLGEPNNDSPLNSYAAKLWESQEDYKRVLIKKYAEAQK 174
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BLAST of mRNA_P-fluviatile_contig10.834.1 vs. uniprot
Match: K3XMD9_SETIT (UBC core domain-containing protein n=21 Tax=Panicoideae TaxID=147369 RepID=K3XMD9_SETIT)

HSP 1 Score: 200 bits (509), Expect = 9.150e-59
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 1 
Query:  220 ASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPETYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNDSPLNTEAAQLWADQEKYRQVCRLKFQ 657
            A G  V RRLQ ELM +MMG DPG SAFP+ DN+F W  T++GS  TAYEG +Y+L L F   YPYK P + F+TPCFHPNVD HGNICLDIL++KWSSA+ V TIL S++SLL +PNNDSPLNT+AA LWA+QE++R++    ++
Sbjct:   34 AEGQSVVRRLQSELMALMMGGDPGVSAFPDGDNIFNWVGTIAGSAGTAYEGTSYRLALAFTAEYPYKPPKVRFDTPCFHPNVDTHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAALWANQEEFRKMVEKLYK 179
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BLAST of mRNA_P-fluviatile_contig10.834.1 vs. uniprot
Match: A0A0L0D7X5_THETB (Ubiquitin-conjugating enzyme E2 C n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D7X5_THETB)

HSP 1 Score: 199 bits (507), Expect = 1.080e-58
Identity = 94/152 (61.84%), Postives = 113/152 (74.34%), Query Frame = 1 
Query:  208 ATAMASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPETYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNDSPLNTEAAQLWADQEKYRQVCRLKFQEG 663
            AT  +SG  V +RLQ ELM +MM  D G SAFP+ DNLF W  T+ G++ T YEGL YKL L FP +YPY AP + F TPCFHPNVD++GNICLDILK+KWS+ ++VSTIL S+RSLL +PNNDSPLN  AA LW +Q +YR V   KF EG
Sbjct:   13 ATGESSGPKVAKRLQSELMSLMMSGDEGVSAFPDGDNLFHWVGTVKGADGTVYEGLEYKLSLTFPTSYPYSAPTVKFVTPCFHPNVDQYGNICLDILKDKWSAIYNVSTILISIRSLLGEPNNDSPLNGYAAALWDNQTEYRAVNVKKFAEG 164
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BLAST of mRNA_P-fluviatile_contig10.834.1 vs. uniprot
Match: A0A5A8DJT4_CAFRO (UBC core domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJT4_CAFRO)

HSP 1 Score: 199 bits (506), Expect = 2.170e-58
Identity = 94/155 (60.65%), Postives = 120/155 (77.42%), Query Frame = 1 
Query:  208 ATAMASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPETYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNDSPLNTEAAQLWADQEKYRQVCRLKFQEGQQA 672
            A A ASG    +RLQ ELM ++M A+PG SAFP  DNLFEW  T+ GS++T +EG+ ++++LVFP  YP+KAP +TFETP FHPNVDE GNICLDILKE+WS+A+SV T+L S+RSLL +PNNDSPLN  AA LW +Q +YR+VC  K++E   A
Sbjct:   24 AGAAASG----KRLQAELMQLVMAAEPGVSAFPAGDNLFEWIGTIDGSKETVFEGMKFQMRLVFPAQYPFKAPQVTFETPVFHPNVDESGNICLDILKEEWSAAYSVKTLLVSIRSLLGEPNNDSPLNAHAAGLWDNQAEYRRVCVAKYEEATGA 174
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BLAST of mRNA_P-fluviatile_contig10.834.1 vs. uniprot
Match: A0A7S3B7L5_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3B7L5_9VIRI)

HSP 1 Score: 199 bits (507), Expect = 3.560e-58
Identity = 92/144 (63.89%), Postives = 111/144 (77.08%), Query Frame = 1 
Query:  235 VTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPETYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNDSPLNTEAAQLWADQEKYRQVCRLKFQEGQ 666
            V++RLQ ELM +M G DPG SAFP  +NLF W  T+ GS  T YEGLT+KL+L FP  YPYKAP +TFETPCFHPNVD+ GNICLDILKEKWSSA+ V T+L S++SLL +PNN+SPLN  AA LWA+QE+Y+ V   K  E +
Sbjct:   56 VSKRLQSELMKLMCGGDPGVSAFPEGNNLFSWVGTIVGSAGTVYEGLTFKLRLKFPNDYPYKAPQVTFETPCFHPNVDQFGNICLDILKEKWSSAYDVRTVLLSIQSLLGEPNNESPLNGYAATLWANQEEYKAVLHKKCAEAE 199
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BLAST of mRNA_P-fluviatile_contig10.834.1 vs. uniprot
Match: A0A059LRK7_9CHLO (Ubiquitin-conjugating enzyme n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LRK7_9CHLO)

HSP 1 Score: 198 bits (503), Expect = 5.870e-58
Identity = 95/142 (66.90%), Postives = 111/142 (78.17%), Query Frame = 1 
Query:  193 ALNPHATAMASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPETYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNDSPLNTEAAQLWAD 618
            A  P AT  A+   VTRRLQQEL  +MM  D   SAFP  D+LF WT T++G+E TAYEGLTY+L L FP  YP+KAP + FET CFHPNVD HGNICLDILKEKWS+A+SV T+LQS++SLLADPNNDSPLNT AA+LW +
Sbjct:   18 ATPPSATDAAA---VTRRLQQELTSVMMNGDRSVSAFPQGDSLFSWTGTITGAEGTAYEGLTYRLSLAFPSDYPFKAPTVRFETKCFHPNVDLHGNICLDILKEKWSAAYSVLTVLQSIQSLLADPNNDSPLNTHAARLWVE 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9D3_ECTSI1.790e-9593.92UBC core domain-containing protein n=2 Tax=Ectocar... [more]
I1HED7_BRADI9.360e-6259.76UBC core domain-containing protein n=11 Tax=Pooide... [more]
A0A2R5GGQ9_9STRA6.640e-6163.58Ubiquitin-conjugating enzyme E2 C n=1 Tax=Hondaea ... [more]
A2ZRP5_ORYSJ6.170e-5961.49Os01g0273100 protein n=11 Tax=Oryzeae TaxID=147380... [more]
A0A5J4Y1P3_9CHLO7.060e-5960.69Ubiquitin-conjugating enzyme E2 n=1 Tax=Trebouxia ... [more]
K3XMD9_SETIT9.150e-5961.64UBC core domain-containing protein n=21 Tax=Panico... [more]
A0A0L0D7X5_THETB1.080e-5861.84Ubiquitin-conjugating enzyme E2 C n=1 Tax=Thecamon... [more]
A0A5A8DJT4_CAFRO2.170e-5860.65UBC core domain-containing protein n=2 Tax=Cafeter... [more]
A0A7S3B7L5_9VIRI3.560e-5863.89Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A059LRK7_9CHLO5.870e-5866.90Ubiquitin-conjugating enzyme n=1 Tax=Helicosporidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:2766481..2770021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.3
Seed ortholog evalue3.4e-77
Seed eggNOG ortholog2880.D7G9D3
Preferred nameUBE2C
KEGG koko:K06674,ko:K06688,ko:K08707
KEGG Pathwayko04111,ko04120,map04111,map04120
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007096,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010458,GO:0010498,GO:0010564,GO:0010604,GO:0010638,GO:0010948,GO:0010965,GO:0010992,GO:0010994,GO:0016020,GO:0016043,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022607,GO:0030071,GO:0030163,GO:0031145,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031536,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034622,GO:0036211,GO:0042176,GO:0042592,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051258,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090231,GO:0090233,GO:0090266,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901976,GO:1901977,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902426,GO:1902494,GO:1903047,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903504,GO:1904666,GO:1904668,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0421@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-28_000490.1
Exons4
Model size1405
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.834.1prot_P-fluviatile_contig10.834.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 2766697..2769300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815396.758485-UTR-P-fluviatile_contig10:2766480..27666961622815396.758485-UTR-P-fluviatile_contig10:2766480..2766696Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 2766481..2766696 +
1693561749.3239226-UTR-P-fluviatile_contig10:2766480..27666961693561749.3239226-UTR-P-fluviatile_contig10:2766480..2766696Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 2766481..2766696 +
1622815396.855617-UTR-P-fluviatile_contig10:2769300..27700211622815396.855617-UTR-P-fluviatile_contig10:2769300..2770021Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 2769301..2770021 +
1693561750.2308898-UTR-P-fluviatile_contig10:2769300..27700211693561750.2308898-UTR-P-fluviatile_contig10:2769300..2770021Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 2769301..2770021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815396.8034565-CDS-P-fluviatile_contig10:2766696..27667251622815396.8034565-CDS-P-fluviatile_contig10:2766696..2766725Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2766697..2766725 +
1693561749.337645-CDS-P-fluviatile_contig10:2766696..27667251693561749.337645-CDS-P-fluviatile_contig10:2766696..2766725Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2766697..2766725 +
1622815396.815862-CDS-P-fluviatile_contig10:2768152..27682701622815396.815862-CDS-P-fluviatile_contig10:2768152..2768270Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2768153..2768270 +
1693561749.3515518-CDS-P-fluviatile_contig10:2768152..27682701693561749.3515518-CDS-P-fluviatile_contig10:2768152..2768270Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2768153..2768270 +
1622815396.8262737-CDS-P-fluviatile_contig10:2768737..27689391622815396.8262737-CDS-P-fluviatile_contig10:2768737..2768939Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2768738..2768939 +
1693561749.3614805-CDS-P-fluviatile_contig10:2768737..27689391693561749.3614805-CDS-P-fluviatile_contig10:2768737..2768939Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2768738..2768939 +
1622815396.8434784-CDS-P-fluviatile_contig10:2769181..27693001622815396.8434784-CDS-P-fluviatile_contig10:2769181..2769300Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2769182..2769300 +
1693561749.3711188-CDS-P-fluviatile_contig10:2769181..27693001693561749.3711188-CDS-P-fluviatile_contig10:2769181..2769300Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2769182..2769300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.834.1

>prot_P-fluviatile_contig10.834.1 ID=prot_P-fluviatile_contig10.834.1|Name=mRNA_P-fluviatile_contig10.834.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=156bp
MASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAY
EGLTYKLKLVFPETYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSS
AFSVSTILQSLRSLLADPNNDSPLNTEAAQLWADQEKYRQVCRLKFQEGQ
QAGLR*
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mRNA from alignment at P-fluviatile_contig10:2766481..2770021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.834.1 ID=mRNA_P-fluviatile_contig10.834.1|Name=mRNA_P-fluviatile_contig10.834.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3541bp|location=Sequence derived from alignment at P-fluviatile_contig10:2766481..2770021+ (Porterinema fluviatile SAG_2381)
AGCTCACGGAGGGACTTCGGGACTTTTTTACCCAATAATTTGTGAGATTG
CCAGAGAAGTGAAAAGAGGAGGGGCGCCCAAACACCACAATTTGTAATAC
CCTAACGGTCGCGCTAGGGAGTTGCAGGGAAGCGAGAGAGAGATAGAGGA
GGAACCACAGCCCAAACCCAAACACCAACATACCCGCCGTCAGCACTTAA
TCCACACGCTACAGCCATGGCCAGCGGCGGAGATGTTACGCGCAGGTAAG
CGCCACAGCTGGGTTGGATAAGAATAAGGCTTGTGTGTTGTGGCACGTCG
GATCTCTCACACCAGTGATTCTTGCGGAGGCTCAGGGGCGGAGGGTAGCT
GCCAGCGTTACCTCCCTCGCTTGCGTGCATTCGGTTGGGGAGAGTGAGTG
CATCCTCACCGATATCCAGTACATTCTCAGCTAGCAGACGCTCAAAAGGT
GCGTAGACTACGTGCTTTTGTCATTGCGCTTTGGCGCGAAAAGTACACAA
CACACCTCGAAGCCACACCATATGCGCCCCGCTTCAAAATTGAACCACAA
GCAGGATCTTCTCAGCGCTGTTACGGGTAGCACCGATATACTCGAGCCCG
TCGATGTGTTATCGTCCTGGATGTGCGTGTCAACGACCATACGAGTGTTT
GAGGAGTTTTTAGGCACAACACATGCTGAGGTGTGTGTGTGCGGCCGTTC
ACAGGATTTCCCGCCGTGCAAGAGTCGGCGAACAAGCGCGCGCTTCCCGT
GGCCGTACCTTCTTGCAGCGCAATCCTTGCCGGCAAGACGAAAAGCACAC
CCTCCACTCTGGTTCTGGTGGCGATCTCCAACGTGTCATTCGAGGGGAGG
ATCCTTTCGTGGATGGAGGACGAAGGATACATCTGGCGCGCGCATTCTGA
GTGTTGGTGCTGGCACACGCACACGCGCGCGCAGAGACGGCTTGTGGCAC
AAATTATTTACATGGAAACCGCCAGCCACAAGTGGTCAATCAGTTTGATG
GCGCCTTCTCGGCGGAGAGCGGCACACCGCTCCGCGCAGCTTTTCAGCTT
TTCAACCGTCAGCGACATCTTACGAAAACCCTCAGGACCCAGGACGCAGC
AAAGTCACACGCGTCTGCGGCTAAACGGCCAGCAAATGTGTGCGGGTCAA
TATCTGCTTCTCTGTGGTTTAGCGTAGGAAGCGCACCCCTTTTTCATCCC
GCGGTCACACCGTCTCGCCCCACACGGCCGGCCGGAAACAAAACAAAGCC
CTTTCCACTTGGCAAGTCAGCTGGGGGACTGATTGACAGCAGCAAGGGTG
GTGCTCAGTTGAAAAGGCAACTCCAAGCCGAGGAATGCAGTTTGACTGCT
TGTATACCTTGGGTTGCGGGTAGGCCGGATTCCTCGAAGAACCCCATGAT
CCGCGCCGCTTCTCGCGGACGAAGGGCCGACTGTACCGATGAGAGCTGGC
CCTGGCTTGAAATATCTTGTCGAAAGCTGCTTCGCCGGAAAGACTAAAAT
TCAGCTGTTAATGCAAATGCTCACCAAACACACCCCATGAGTTGCAAACT
CTAGGCGTGGTGTAGCCAGTCTGTCTACTAGCGCAAACAATGGAGTCGCT
GCGTTCTTGTCATCCCTAACTCAACTCTGTTGTCTCTCGACACGGTCTTT
GTCCGCTTTTTGGCCAACCCAGGTTGCAGCAAGAGCTAATGGGCATTATG
ATGGGAGCAGACCCCGGGGCTTCGGCGTTCCCGAACGACGACAACCTGTT
CGAGTGGACCGCGACACTGAGCGGGAGCGAGGACACGGCGGTAAGCGAGA
CGGACAAACCTGAACAGACGGATCGAAGCGGACACGGAAGTACATCAGTG
TAGAAAAATGTATTGCAGCGTCGTCCGAACGCCGAGCCATCGGAGATAAG
TGTCGACAGCGGTAACGTGAAGCCCAACTAAATGCCAACGATTCTGTAGC
CATCAACGCAGATGGGGACGTTCCCCGTTGCAAGCAACACCAGGGCGTCG
CGGCCCGGCCACTTACTGCTGTTTTCGACCGGCGCGGGCAGCACATGAGA
CAATTGCACCATTGGTTGAGCCTTACACCCCTTCCGTGCACGAGTGCGCG
TATCTCACGATGGGACAGGAGTTCCATTTCGAACAAAATTCAAAAGAGTT
CGGACGGGTTTACTCGCGCTGACCCCTCCCCTAAACTCCTGACGCCCGCC
CTGCCCCGTTCAATCTCTTTCGTCCCTGATCCACAAAAAACCATGACATC
AACGCAGTACGAAGGGCTGACGTACAAGCTCAAGCTCGTGTTCCCGGAGA
CGTACCCTTACAAGGCGCCGCTTATCACGTTCGAGACGCCGTGCTTCCAC
CCCAACGTGGACGAGCATGGCAACATCTGCCTTGATATCCTCAAGGAGAA
GTGGTCCTCCGCCTTCAGCGTCAGCACCATCCTGCAATCCCTCCGATCCT
TGCTGGCCGGTGAGTCTGAGACACAGAAAGGGGGGATGTGGGGGGGATGT
TCTCAGTTGTTGCTTGCCTTCATGATATGATCGTTGCCCACGTATCCTGA
AAAGGGAGAGGGGGGAGAGAGAGGAGGGCACCGGCATCCTGCTTTTCATT
CGATGCTCATCGAGGGCTCCCTTTCGCGCAAACACATACCCCGTCAACGC
CGTTCTCAAAAGTCTTTTTTGTGCTTTGTGCCCCCTCCCTCTCGTCGGCA
GACCCCAACAACGACAGCCCGCTCAACACGGAGGCGGCTCAGCTTTGGGC
GGATCAGGAAAAATACAGACAAGTTTGCCGGCTAAAGTTTCAGGAGGGCC
AACAGGCGGGTTTGAGGTAGCCCGCCTCAACGACGACTTAACCTCTTTTC
TTCTTCCTTGATACATGCTCTCGCTTGCGGACAGGGGCGGCGCCGAAGAT
TTCACAGGCATTTGTGTTGAAAACAATTCAATACTCGTTAACAAGAACAC
AATCGAAGTTTTTCGAAGCGAGTTGGCGTGCGTCCAGCGCCGCCATTGCG
AATGTAGTGCATAAAGGGCAGCCCAACGCGGCAGGGGGAAGCCCTTTGCT
AGAACTTCATTCAGCGCATGGCAGGGCATCGCCCAGTCCTCTCTTTTCCG
CGCAAGCGTGGGTTGCCACCAGGACTTCGATGCATGGAGCACGTTTATCT
TGGTTTCTCCCGTGTGCCTGGCGTGTTTGTGCTGTGTGCCGGATACAAGC
ACCGATTGTCTTTCCTCGTGTTTGCCTCGTGCACAAGTGCGATGAGTGCG
ACACGTGGACTTGAGAGGGAGGCTTTATGAGGGTCAAAGCAGTGTGGTTG
CTGTCCGATCGGGCCGAAAGCGTGTTATTTTACGGCTAGATGTACCAATA
CGGCGCGCGCCTCATGCACGCACTTAAATAGCGCCTCGAAGTAGAATCCC
GCGTTCCCCCCCTTCTTTTCCGTGATTTGTCTGTTCGCTGTGTGTAAGAA
TTCTACGGGCAAAAGCAAAATGAAAGTGGTTGAATGGTGGCCGTGCTCTC
ATCCTCCCGCCGCTAAGCCGGCGACGGTTTAGACCCCAAAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:2766481..2770021+

>mRNA_P-fluviatile_contig10.834.1 ID=mRNA_P-fluviatile_contig10.834.1|Name=mRNA_P-fluviatile_contig10.834.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=936bp|location=Sequence derived from alignment at P-fluviatile_contig10:2766481..2770021+ (Porterinema fluviatile SAG_2381)
ATGGCCAGCGGCGGAGATGTTACGCGCAGATGGCCAGCGGCGGAGATGTT
ACGCGCAGGTTGCAGCAAGAGCTAATGGGCATTATGATGGGAGCAGACCC
CGGGGCTTCGGCGTTCCCGAACGACGACAACCTGTTCGAGTGGACCGCGA
CACTGAGCGGGAGCGAGGACACGGCGGTTGCAGCAAGAGCTAATGGGCAT
TATGATGGGAGCAGACCCCGGGGCTTCGGCGTTCCCGAACGACGACAACC
TGTTCGAGTGGACCGCGACACTGAGCGGGAGCGAGGACACGGCGTACGAA
GGGCTGACGTACAAGCTCAAGCTCGTGTTCCCGGAGACGTACCCTTACAA
GGCGCCGCTTATCACGTTCGAGACGCCGTGCTTCCACCCCAACGTGGACG
AGCATGGCAACATCTGCCTTGATATCCTCAAGGAGAAGTGGTCCTCCGCC
TTCAGCGTCAGCACCATCCTGCAATCCCTCCGATCCTTGCTGGCCGTACG
AAGGGCTGACGTACAAGCTCAAGCTCGTGTTCCCGGAGACGTACCCTTAC
AAGGCGCCGCTTATCACGTTCGAGACGCCGTGCTTCCACCCCAACGTGGA
CGAGCATGGCAACATCTGCCTTGATATCCTCAAGGAGAAGTGGTCCTCCG
CCTTCAGCGTCAGCACCATCCTGCAATCCCTCCGATCCTTGCTGGCCGAC
CCCAACAACGACAGCCCGCTCAACACGGAGGCGGCTCAGCTTTGGGCGGA
TCAGGAAAAATACAGACAAGTTTGCCGGCTAAAGTTTCAGGAGGGCCAAC
AGGCGGGTTTGAGGTAGACCCCAACAACGACAGCCCGCTCAACACGGAGG
CGGCTCAGCTTTGGGCGGATCAGGAAAAATACAGACAAGTTTGCCGGCTA
AAGTTTCAGGAGGGCCAACAGGCGGGTTTGAGGTAG
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