mRNA_P-fluviatile_contig10.827.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.827.1
Unique NamemRNA_P-fluviatile_contig10.827.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:2710281..2710910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size632
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.111874-CDS-P-fluviatile_contig10:2710280..27106461622815361.111874-CDS-P-fluviatile_contig10:2710280..2710646Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2710281..2710646 +
1693561605.630392-CDS-P-fluviatile_contig10:2710280..27106461693561605.630392-CDS-P-fluviatile_contig10:2710280..2710646Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 2710281..2710646 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.1213415-UTR-P-fluviatile_contig10:2710646..27109101622815361.1213415-UTR-P-fluviatile_contig10:2710646..2710910Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 2710647..2710910 +
1693561605.6379886-UTR-P-fluviatile_contig10:2710646..27109101693561605.6379886-UTR-P-fluviatile_contig10:2710646..2710910Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 2710647..2710910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.827.1prot_P-fluviatile_contig10.827.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 2710281..2710646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.827.1

>prot_P-fluviatile_contig10.827.1 ID=prot_P-fluviatile_contig10.827.1|Name=mRNA_P-fluviatile_contig10.827.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=122bp
PQAAPSICSTSRRVPPPARTSLPLLSSTGPSPSFWILFPTRCHPVPVWRR
STTTTTTTGRPSSFAPLPLPPRRRRRRRGRCCTPGLACPWRRPPTPPRDA
ASAVVPPRRPWFRYRRCLVGQ*
back to top

mRNA from alignment at P-fluviatile_contig10:2710281..2710910+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.827.1 ID=mRNA_P-fluviatile_contig10.827.1|Name=mRNA_P-fluviatile_contig10.827.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=630bp|location=Sequence derived from alignment at P-fluviatile_contig10:2710281..2710910+ (Porterinema fluviatile SAG_2381)
CCTCAAGCCGCTCCTTCAATCTGCTCCACGTCGCGTCGCGTCCCCCCCCC
GGCACGGACATCCCTTCCCCTACTCTCCTCCACCGGTCCATCCCCTTCGT
TCTGGATACTGTTCCCGACCCGCTGCCACCCGGTCCCAGTGTGGCGTCGG
TCAACGACGACGACGACGACAACTGGGCGTCCGTCATCCTTCGCCCCACT
CCCTCTTCCTCCCCGCCGCCGCCGCCGCCGCCGAGGGAGGTGTTGCACTC
CGGGGTTGGCGTGCCCGTGGCGGAGACCTCCGACGCCGCCGCGTGATGCT
GCTTCTGCTGTCGTGCCCCCTCGCCGACCGTGGTTCCGCTACCGCCGCTG
TTTGGTCGGCCAATGACAGTCGAAAAACTGTGATCCCGACATGTTGTCGG
ATGGTTCTCCTCTAGGTCAATTAGCCCGTTGTTGTTGTAGTCGTGGCCAT
CATCGGCGTCATCATCGTTGTTGTTTTTGTTTTCGATTTTGCTGCGTAAT
CTTCTGATAAGGGAAATGTATTTTTGGATATCGTCCCTTGGGGTCTCCGC
CGTGGCTTGGGCTGCCGAGCCATCGGTTTCCGCTGTTGAGGGACACGCTG
AAGAGGAAGCGGCGGAAGAGGAGGAAGAAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig10:2710281..2710910+

>mRNA_P-fluviatile_contig10.827.1 ID=mRNA_P-fluviatile_contig10.827.1|Name=mRNA_P-fluviatile_contig10.827.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=732bp|location=Sequence derived from alignment at P-fluviatile_contig10:2710281..2710910+ (Porterinema fluviatile SAG_2381)
CCTCAAGCCGCTCCTTCAATCTGCTCCACGTCGCGTCGCGTCCCCCCCCC
GGCACGGACATCCCTTCCCCTACTCTCCTCCACCGGTCCATCCCCTTCGT
TCTGGATACTGTTCCCGACCCGCTGCCACCCGGTCCCAGTGTGGCGTCGG
TCAACGACGACGACGACGACAACTGGGCGTCCGTCATCCTTCGCCCCACT
CCCTCTTCCTCCCCGCCGCCGCCGCCGCCGCCGAGGGAGGTGTTGCACTC
CGGGGTTGGCGTGCCCGTGGCGGAGACCTCCGACGCCGCCGCGTGATGCT
GCTTCTGCTGTCGTGCCCCCTCGCCGACCGTGGTTCCGCTACCGCCGCTG
TTTGGTCGGCCAATGACCTCAAGCCGCTCCTTCAATCTGCTCCACGTCGC
GTCGCGTCCCCCCCCCGGCACGGACATCCCTTCCCCTACTCTCCTCCACC
GGTCCATCCCCTTCGTTCTGGATACTGTTCCCGACCCGCTGCCACCCGGT
CCCAGTGTGGCGTCGGTCAACGACGACGACGACGACAACTGGGCGTCCGT
CATCCTTCGCCCCACTCCCTCTTCCTCCCCGCCGCCGCCGCCGCCGCCGA
GGGAGGTGTTGCACTCCGGGGTTGGCGTGCCCGTGGCGGAGACCTCCGAC
GCCGCCGCGTGATGCTGCTTCTGCTGTCGTGCCCCCTCGCCGACCGTGGT
TCCGCTACCGCCGCTGTTTGGTCGGCCAATGA
back to top