mRNA_P-fluviatile_contig10.750.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.750.1
Unique NamemRNA_P-fluviatile_contig10.750.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:1876153..1877465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size520
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.3612878-CDS-P-fluviatile_contig10:1876152..18762611622815358.3612878-CDS-P-fluviatile_contig10:1876152..1876261Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1876153..1876261 +
1693561598.5972486-CDS-P-fluviatile_contig10:1876152..18762611693561598.5972486-CDS-P-fluviatile_contig10:1876152..1876261Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1876153..1876261 +
1622815358.428285-CDS-P-fluviatile_contig10:1877054..18774641622815358.428285-CDS-P-fluviatile_contig10:1877054..1877464Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1877055..1877464 +
1693561598.6110673-CDS-P-fluviatile_contig10:1877054..18774641693561598.6110673-CDS-P-fluviatile_contig10:1877054..1877464Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1877055..1877464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.750.1prot_P-fluviatile_contig10.750.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 1876153..1877464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.750.1

>prot_P-fluviatile_contig10.750.1 ID=prot_P-fluviatile_contig10.750.1|Name=mRNA_P-fluviatile_contig10.750.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=173bp
RAGWSDDDAGGGSDKGFNARAAPAPGGAGGKLPVKEVSMAAFKTEEDYWD
RLERLEAEAEGRGNPAVRRTKTDQSRSSSRSSSSSMVQHLNVRTFERPMA
PSSRQKGGGGQPRFAAMLRLGVGGGSGGSGGSDRGKMSDRLDLRSRQAGR
GEKSTAGAWRIENVRRRQPAEGG
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mRNA from alignment at P-fluviatile_contig10:1876153..1877465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.750.1 ID=mRNA_P-fluviatile_contig10.750.1|Name=mRNA_P-fluviatile_contig10.750.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1313bp|location=Sequence derived from alignment at P-fluviatile_contig10:1876153..1877465+ (Porterinema fluviatile SAG_2381)
AGGGCGGGATGGAGCGATGATGATGCAGGCGGCGGCAGCGACAAAGGCTT
CAACGCGCGCGCTGCGCCGGCGCCCGGCGGGGCGGGGGGGAAGCTGCCGG
TGAAAGAGGGTAAGATGCGCACATGACGTGGACATCGGATAGACTTGGCT
GAAGTATGAAGAAGGTAGATACACACGTGAGCGTGAGCATCGGATATTTG
TGGCCGAACAACGAAGCAGGAAGAAATACGTTCAAAATCGCTGAGGCACT
CGCTCGTGTGCACGTGCGTGCATTGTGTAGTTTGCTCTGCGGGGTGCGTT
GTCATTTTTCACCGACGAGGCAAGGATGCAAGCCTCGGCAACGTGGGGGC
GGGATAAGGTGAGGAGGAAGGTTTTCGCTAGGGAAGGTTGTGATCAGCCG
CATACTCCGGCGTGTAGACCCGTGCGCCAGGCTTCCCGTCCAACACACGA
TCTGTGTTCCGGGCGGGGGCTTACTCATGTTTTGCATGCCTTAGTTGTTA
GACCATTGACCACGCGTCCTCGAGAGGACGGAGCATTGTTCCCGCAGGAT
CGATCACCGATGGCCGATCGTCCGAGCGGGGGGAGGGGCACTTCTGCAGG
TGCAAAATCGGCACGATTCCCAGCAAATTTCGGCGTGATCCCCGAGGTTT
TGGCCCGGATCGTGGTTGGAGATCCCTCCAGAGATCTCTCTCAAGGTCTC
ATCACCGTTGGAGCAGGCCCACACGCGGGAGAGGAGAAGGGCATCCAGTC
CGTTGTTCGGTTATGATGGTGAAGTTGGTGGTGATGCACTCATTGATTTG
CTTCGCCGCCAAACACGCTTCGCCCCTGCGCCCCGCTCCTGATTCTCCCT
CCCCCCCCTCGCCTCGATTGCTGTTTGTCTGCACACGGTTGCCACACAAC
AGTGTCAATGGCGGCTTTCAAAACCGAAGAAGACTATTGGGATCGGCTGG
AACGGCTTGAGGCGGAGGCGGAAGGAAGAGGAAATCCGGCCGTTCGTAGA
ACGAAGACTGATCAATCTCGGTCGTCATCGCGGTCATCATCGTCGTCGAT
GGTGCAGCATCTCAACGTTCGAACGTTCGAGCGGCCCATGGCGCCTAGCA
GCAGGCAGAAGGGCGGCGGCGGCCAACCCCGATTTGCGGCGATGTTGCGA
TTGGGAGTCGGCGGAGGCAGCGGCGGCAGCGGCGGCAGCGATCGGGGAAA
GATGAGCGACCGGCTGGATCTTCGCTCGCGACAGGCCGGACGTGGGGAGA
AGTCCACGGCCGGGGCCTGGCGCATCGAGAATGTGCGGCGAAGGCAGCCC
GCCGAAGGAGGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:1876153..1877465+

>mRNA_P-fluviatile_contig10.750.1 ID=mRNA_P-fluviatile_contig10.750.1|Name=mRNA_P-fluviatile_contig10.750.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1038bp|location=Sequence derived from alignment at P-fluviatile_contig10:1876153..1877465+ (Porterinema fluviatile SAG_2381)
AGGGCGGGATGGAGCGATGATGATGCAGGCGGCGGCAGCGACAAAGGCTT
CAACGCGCGCGCTGCGCCGGCGCCCGGCGGGGCGGGGGGGAAGCTGCCGG
TGAAAGAGGAGGGCGGGATGGAGCGATGATGATGCAGGCGGCGGCAGCGA
CAAAGGCTTCAACGCGCGCGCTGCGCCGGCGCCCGGCGGGGCGGGGGGGA
AGCTGCCGGTGAAAGAGGTGTCAATGGCGGCTTTCAAAACCGAAGAAGAC
TATTGGGATCGGCTGGAACGGCTTGAGGCGGAGGCGGAAGGAAGAGGAAA
TCCGGCCGTTCGTAGAACGAAGACTGATCAATCTCGGTCGTCATCGCGGT
CATCATCGTCGTCGATGGTGCAGCATCTCAACGTTCGAACGTTCGAGCGG
CCCATGGCGCCTAGCAGCAGGCAGAAGGGCGGCGGCGGCCAACCCCGATT
TGCGGCGATGTTGCGATTGGGAGTCGGCGGAGGCAGCGGCGGCAGCGGCG
GCAGCGATCGGGGAAAGATGAGCGACCGGCTGGATCTTCGCTCGCGACAG
GCCGGACGTGGGGAGAAGTCCACGGCCGGGGCCTGGCGCATCGAGAATGT
GCGGCGAAGGCAGCCCGCCGAAGGAGGATGTCAATGGCGGCTTTCAAAAC
CGAAGAAGACTATTGGGATCGGCTGGAACGGCTTGAGGCGGAGGCGGAAG
GAAGAGGAAATCCGGCCGTTCGTAGAACGAAGACTGATCAATCTCGGTCG
TCATCGCGGTCATCATCGTCGTCGATGGTGCAGCATCTCAACGTTCGAAC
GTTCGAGCGGCCCATGGCGCCTAGCAGCAGGCAGAAGGGCGGCGGCGGCC
AACCCCGATTTGCGGCGATGTTGCGATTGGGAGTCGGCGGAGGCAGCGGC
GGCAGCGGCGGCAGCGATCGGGGAAAGATGAGCGACCGGCTGGATCTTCG
CTCGCGACAGGCCGGACGTGGGGAGAAGTCCACGGCCGGGGCCTGGCGCA
TCGAGAATGTGCGGCGAAGGCAGCCCGCCGAAGGAGGA
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