mRNA_P-fluviatile_contig10.724.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.724.1
Unique NamemRNA_P-fluviatile_contig10.724.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig10.724.1 vs. uniprot
Match: D7FXP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP6_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 9.440e-23
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 2 
Query:   92 MGLSTWPELELSPSEALPLLQTARMRRFGVNYLQDAVCTGLGLLAHLDGSHVRLFALPTRRGRDRPAGGVTTAAATATASIVADIDLEIGRRSRSPGETGDR 397
            MG S WP +E +P + LPLLQ AR+RRFGVNYL+DAVC GLGLLAHLDGS VRL A P+R G+    GG       A   +VA IDL+    + +PG++G R
Sbjct:    1 MGPSLWPGVEHAPVQELPLLQAARLRRFGVNYLKDAVCPGLGLLAHLDGSSVRLLAFPSRSGQRGLLGG-------APGRVVAVIDLKARLANMAPGDSGKR 95
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BLAST of mRNA_P-fluviatile_contig10.724.1 vs. uniprot
Match: A0A6H5KXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC0_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.000e-5
Identity = 32/65 (49.23%), Postives = 38/65 (58.46%), Query Frame = 2 
Query:  197 AVCTGLGLLAHLDGSHVRLFALPTRRGRDRPAGGVTTAAATATASIVADIDLEIGRRSRSPGETG 391
            AVC GLGLLAHLDGS VRL A P+R G+    GG       A   +VA IDL+    +  PG+ G
Sbjct:   60 AVCPGLGLLAHLDGSSVRLLAFPSRSGQGGLLGG-------APGHVVAVIDLKARLANMDPGDNG 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXP6_ECTSI9.440e-2354.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXC0_9PHAE1.000e-549.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:1516473..1518126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size470
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815357.8549917-CDS-P-fluviatile_contig10:1516474..15167451622815357.8549917-CDS-P-fluviatile_contig10:1516474..1516745Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1516475..1516745 -
1693561586.0406938-CDS-P-fluviatile_contig10:1516474..15167451693561586.0406938-CDS-P-fluviatile_contig10:1516474..1516745Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1516475..1516745 -
1622815357.8646004-CDS-P-fluviatile_contig10:1517929..15181261622815357.8646004-CDS-P-fluviatile_contig10:1517929..1518126Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1517930..1518126 -
1693561591.875765-CDS-P-fluviatile_contig10:1517929..15181261693561591.875765-CDS-P-fluviatile_contig10:1517929..1518126Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1517930..1518126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.724.1prot_P-fluviatile_contig10.724.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 1516475..1518126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.724.1

>prot_P-fluviatile_contig10.724.1 ID=prot_P-fluviatile_contig10.724.1|Name=mRNA_P-fluviatile_contig10.724.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=156bp
ITGQQPTAPSTAEASIPSTVFNGIETSRFRHGAFDVAGARALPFGGAAAP
TDGTNASFWRQLSPGRRLYRPWPSRTPGWLARTTVRATDSAGPRPASGRC
HHRRGHRHRQHRSRHRSRNRTEKSKPWRNRRQGREKVVRGRGKVGASVGG
DQLRGS
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mRNA from alignment at P-fluviatile_contig10:1516473..1518126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.724.1 ID=mRNA_P-fluviatile_contig10.724.1|Name=mRNA_P-fluviatile_contig10.724.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1654bp|location=Sequence derived from alignment at P-fluviatile_contig10:1516473..1518126- (Porterinema fluviatile SAG_2381)
ATCACCGGACAGCAGCCGACAGCACCAAGCACAGCAGAGGCATCTATCCC
CAGCACCGTTTTCAATGGCATCGAAACTTCGAGGTTTCGGCATGGGGCTT
TCGACGTGGCCGGAGCTAGAGCTCTCCCCTTCGGAGGCGCTGCCGCTCCT
ACAGACGGCACGAATGCGTCGTTTTGGCGTCAACTATCTCCAGGACGGTG
CGATCTACTGCCTCTTGACTGCTGAAGAGTCGTTGTTCTCTGCAACCGGG
AAACAGCTGACACCCATGCAGCAGACTGCAAATCTTAAAATCCGTGAAAA
TTATGTTGATCGCTGTCGTTGGCACCGTGGTGGCGGCGGTCGGATCCGTA
CACAACCACGTTTTTTCCGGCCGGCATACCTGCACACACATCCATGCTTC
GGTCTGCTGAACTCTGCTCAAGTCCAGCAACAGCGGTTGGACGTGTTTGT
AGGGTACAGGGGTGTGTGTTTGTGTCTGTGGACGCAGGTGATCAGTAATG
ATCGCGCGCGAAGTGAGGCTGGTGCATCGCAGAGAGGCTCGAAGTTGACG
GGAAAGTACTCCACTATTTCTTAAAAGGGTCGCTTCCGATGAAATTCCAT
GCCTCATGATTCACTTCTCTCCGCGACGCACGAGTTTAAGCACGGCCAAA
AAGCGTTTTTGTTTTGCGCGGTTTCAATTAGTTAACGAAGCCTCCTTGCC
CTGCCCAGAAGGTCTACTTGCTGTCGAACTTGAGGAGGGGGAGGTCTAGC
CGCACTTGTGTGTGCTACACGATACATTGAGTGGACCAGGGAGTCCAATT
GCAAACTGATGTACAGAGTTGGTAAATTGGCTTCTAGTGTTCTCAACATC
TGTGCCACTGAACAACATCGATTCGTCAAGGGAGTCCAGTGTCCTTTCAT
TCACCCATGCCGGATCTTGCACATGTCGGTAAGGTGTGGGGAGGAGACTG
CGTTCCCATCATTTTGCGCCGGTGGCTGTGCTTTGTTCCCCACGTTCTGT
TTGGCCACGCTCGTGGGCCAGCGTGACAAGCAGCCATTTCGGCCGAACCT
GAACATGCACATGCAGCCGCTTTCGTCCGCATCGCGGGATGTGCACATGC
CCACCCGCCCGCTTGCGACGGGCACAGCACAATGAGGAAGAGCAGGCAGG
GAGCCCTCCACCTCTGTCAAAAAATCTCAATTAGCGTCAGCTGCTTTCCA
TCCTCGCTCCCAAAAATGGATCGGCAACAGAAGAATCTAGGCGTTGCGTG
TACGTGTAGTAGTCTAGTTTTCTTGTTTCCCACCCCGCCAAGATCCCCCA
CCCTTCACCCCCACCCTCTCCCTCCCGCGAATGTTTGCGCCATTTTCACA
ACCGCCTATCCCCCCCGGCCCCGCCGGACAGCCGTCTGTACCGGCCTTGG
CCTTCTCGCACACCTGGATGGCTCGCACGTACGACTGTTCGCGCTACCGA
CTCGGCGGGGCCGCGACCGGCCAGCGGGCGGTGTCACCACCGCCGCGGCC
ACCGCCACCGCCAGCATCGTAGCCGACATCGATCTCGAAATCGGACGGAG
AAGTCGAAGCCCTGGCGAAACCGGAGACAGGGGCGGGAAAAAGTGGTTCG
GGGAAGAGGGAAGGTCGGCGCAAGCGTGGGCGGCGATCAACTCCGAGGCA
GCGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:1516473..1518126-

>mRNA_P-fluviatile_contig10.724.1 ID=mRNA_P-fluviatile_contig10.724.1|Name=mRNA_P-fluviatile_contig10.724.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=936bp|location=Sequence derived from alignment at P-fluviatile_contig10:1516473..1518126- (Porterinema fluviatile SAG_2381)
ATCACCGGACAGCAGCCGACAGCACCAAGCACAGCAGAGGCATCTATCCC
CAGCACCGTTTTCAATGGCATCGAAACTTCGAGGTTTCGGCATGGGGCTT
TCGACGTGGCCGGAGCTAGAGCTCTCCCCTTCGGAGGCGCTGCCGCTCCT
ACAGACGGCACGAATGCGTCGTTTTGGCGTCAACTATCTCCAGGACGATC
ACCGGACAGCAGCCGACAGCACCAAGCACAGCAGAGGCATCTATCCCCAG
CACCGTTTTCAATGGCATCGAAACTTCGAGGTTTCGGCATGGGGCTTTCG
ACGTGGCCGGAGCTAGAGCTCTCCCCTTCGGAGGCGCTGCCGCTCCTACA
GACGGCACGAATGCGTCGTTTTGGCGTCAACTATCTCCAGGACGCCGTCT
GTACCGGCCTTGGCCTTCTCGCACACCTGGATGGCTCGCACGTACGACTG
TTCGCGCTACCGACTCGGCGGGGCCGCGACCGGCCAGCGGGCGGTGTCAC
CACCGCCGCGGCCACCGCCACCGCCAGCATCGTAGCCGACATCGATCTCG
AAATCGGACGGAGAAGTCGAAGCCCTGGCGAAACCGGAGACAGGGGCGGG
AAAAAGTGGTTCGGGGAAGAGGGAAGGTCGGCGCAAGCGTGGGCGGCGAT
CAACTCCGAGGCAGCCCGTCTGTACCGGCCTTGGCCTTCTCGCACACCTG
GATGGCTCGCACGTACGACTGTTCGCGCTACCGACTCGGCGGGGCCGCGA
CCGGCCAGCGGGCGGTGTCACCACCGCCGCGGCCACCGCCACCGCCAGCA
TCGTAGCCGACATCGATCTCGAAATCGGACGGAGAAGTCGAAGCCCTGGC
GAAACCGGAGACAGGGGCGGGAAAAAGTGGTTCGGGGAAGAGGGAAGGTC
GGCGCAAGCGTGGGCGGCGATCAACTCCGAGGCAGC
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