mRNA_P-fluviatile_contig10.701.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.701.1
Unique NamemRNA_P-fluviatile_contig10.701.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig10.701.1 vs. uniprot
Match: D7FXM4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM4_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.430e-23
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2 
Query:   50 VKSSTP-RRPNTTGGQQGTKSGEVMCPKHPRSWVEKKKFFITKKRVCPYCELESYAIPRPDGS-----VPREPGFGG 262
            ++S +P RRP+TTG    TKSGEVMCP+HPRSW+EKK FFITK R+CPYC+LESYA+PR +       VP EPGFGG
Sbjct:    2 LRSPSPSRRPSTTG--DATKSGEVMCPRHPRSWIEKKVFFITKTRLCPYCDLESYAVPRVNEKGVLQEVPCEPGFGG 76
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BLAST of mRNA_P-fluviatile_contig10.701.1 vs. uniprot
Match: A0A6H5LAT3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT3_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.140e-22
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 2 
Query:   50 VKSSTP-RRPNTTGGQQGTKSGEVMCPKHPRSWVEKKKFFITKKRVCPYCELESYAIPRPDGS-----VPREPGFGG 262
            ++S +P RRP+ TGG   TKSGEV CP+HPRSW+EKK FFIT+ R+CPYC+LESYA+PR +       VP EPGFGG
Sbjct:    2 LRSPSPSRRPSATGG--ATKSGEVRCPRHPRSWIEKKVFFITRTRLCPYCDLESYAVPRVNEKGVVQEVPCEPGFGG 76
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXM4_ECTSI3.430e-2364.94Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5LAT3_9PHAE4.140e-2262.34Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:1310159..1314707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.2e-19
Seed eggNOG ortholog2880.D7FXM4
KEGG koko:K15503
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size262
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.701.1prot_P-fluviatile_contig10.701.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 1310196..1314707 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815379.432264-UTR-P-fluviatile_contig10:1310158..13101951622815379.432264-UTR-P-fluviatile_contig10:1310158..1310195Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 1310159..1310195 +
1693561660.226064-UTR-P-fluviatile_contig10:1310158..13101951693561660.226064-UTR-P-fluviatile_contig10:1310158..1310195Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 1310159..1310195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815379.4437604-CDS-P-fluviatile_contig10:1310195..13102671622815379.4437604-CDS-P-fluviatile_contig10:1310195..1310267Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1310196..1310267 +
1693561660.2396915-CDS-P-fluviatile_contig10:1310195..13102671693561660.2396915-CDS-P-fluviatile_contig10:1310195..1310267Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1310196..1310267 +
1622815379.452807-CDS-P-fluviatile_contig10:1313714..13138121622815379.452807-CDS-P-fluviatile_contig10:1313714..1313812Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1313715..1313812 +
1693561660.2477596-CDS-P-fluviatile_contig10:1313714..13138121693561660.2477596-CDS-P-fluviatile_contig10:1313714..1313812Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1313715..1313812 +
1622815379.4636734-CDS-P-fluviatile_contig10:1314652..13147071622815379.4636734-CDS-P-fluviatile_contig10:1314652..1314707Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1314653..1314707 +
1693561660.2554057-CDS-P-fluviatile_contig10:1314652..13147071693561660.2554057-CDS-P-fluviatile_contig10:1314652..1314707Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 1314653..1314707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.701.1

>prot_P-fluviatile_contig10.701.1 ID=prot_P-fluviatile_contig10.701.1|Name=mRNA_P-fluviatile_contig10.701.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=75bp
MEAPVKSSTPRRPNTTGGQQGTKSGEVMCPKHPRSWVEKKKFFITKKRVC
PYCELESYAIPRPDGSVPREPGFGG
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mRNA from alignment at P-fluviatile_contig10:1310159..1314707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.701.1 ID=mRNA_P-fluviatile_contig10.701.1|Name=mRNA_P-fluviatile_contig10.701.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4549bp|location=Sequence derived from alignment at P-fluviatile_contig10:1310159..1314707+ (Porterinema fluviatile SAG_2381)
AAAGGAGTAACCACCACGCTGCTTTTCTGATCGCGACATGGAGGCTCCAG
TCAAATCTTCGACGCCCCGGCGTCCAAACACGACAGGAGGCCAGCAAGGC
ACCAAGTCGGTGAGTCAGCAAAGCCGGCAAACGAACAATTTTCAGACGGA
GAGGGTCACGTAGCATGGAGCGGAAAGAGAGCGAGTCTAGGAAAAACTGC
ATTCAAATCGACGGAAGCAATTCCTTCAAACGAGCGAACGAGAGAGCGAG
AGCGGGCGAGCGAGGTTGGGGATGCCTTCGTAGGTTGCTGGCGATATCTC
CCAATTTGCTTGCTGAGGTCCTGCAGAGATGTCATCGCCACGCACCATAC
AATGCATACCACTGACGCTCCATGTATCGGCGAGGGTATCTGGGAAGTCT
CCCTGAGGTGTTGCGTTGGACACAGAGGtTTTTCTCGTGGCAACCGCAAG
TGTGTAGAAAAATTAAAATGTTTCCAGCTGTGAACACTCCACACACCACT
CGCCTTGCCACAGGAGAGGAAAATACGTTAACGGGAATAGAAATTCATGC
CCATGACCCCCGCACCCACAGGCAGAGACCTGCCGCGTTCAAGAGAGGAA
GCACTCACTGTCGCCGCCTTGCTGGCAGCTGCTTCTGACGTCCTCTCGAT
GGTCAGCCGATCAAAGCGGGTCGTAGCCAAACACACACCTCGCTCTGCTT
TCCTGTTGCCTGTAATGTTGGCGCTTGCTCATCGCTGTCGTTCTCTGGCG
CGTACACGCAGCCTACCGCCAAGAAGTCTTCCCGCCTGCCTCCCCCCGCA
GTGGGCACAGTAGGTGCACCGCACGGCACATGGGAAAGGGGACAGAAAAA
TGAATGAGCACGTCACCACCGTGTATAAACTACATCGCACGCACTGCACT
TTGCGCATGAATACTCCAAAACTGCAATAACACACACAAAACCAGCAGCA
CCTAAAAATTGGAATGTTTTTGGGAAGAGACAATCCAAGATTCGTACAGT
ATCACATGTCCTCCGTATTCTACCTGGTATCGTCTGTGTGCTCTGGAGGT
GCGCATCCGAGGTTATTTTGGAAAGGCATATCTACCAGCCCAAACAAGAG
AGAGACATGCATACACACTCTCACCGCATCGGTTACGCAACTTCACCGAG
GGCTTGTGTCGCCTGCGTACCTCCGATCACGCCGTGCTTCTCACAGAGAT
TTAACTACGTGCATGACTGACGGGTCTGGCCGGTGAGCACCCGGACATGT
AGCATGCGGGCCTAGTACGGATGTGGGGATAACTTGTGAATATTTTTGGA
TGGAGTAAGCAAGTGAGGGTAGCTTGTGATTCCTGTGGCACCCACGCACC
ACATGGGATGTCCTTTTCCTTTATCCTCAGCCGACGATTTGAGTTTTCTA
TTTTGATTCCCTATGAATCCACTGTCAGTTTTTTTATTGTCCTTACTGTA
CCCATGTTGGGTTTCTCTTAGCCTGTGGCCACGGAAGCCGATTCGATGGG
GTAGATCAGCACGGACACTCGCGGGTACTGCGAAGTGATCGGGAGGTCCT
TCAAGGCGATAACAAGAACATGCCCCTTCGTCGAGAATACGGCGACGCCG
CTTGCTAAAAGTTCGTCCGTGTGAATCAGGGAAGCTGCTGCGCGCGCGTG
TGTGTCGTGTGTGCTTGTTAATGCTGCTTGCTGTAGCCGGCCCGTTCGTA
GGAAACACCTACTTTGTGCAAGGCTCATTTCCTTTCTTGATCCCACCGCC
TGAGCGCAGGCTATTTCAAAGTGCGGCGACGGCAGCTGAGCCCGATTCCT
TGCGAGGTTTTTCTTATGTTTTCAAAAATCTGAACCTCGATTTCTACGAC
CATGTTTCTCACGAGCAGGCCGGCACCGCGCTCACGGGCTGAGTGTGTGT
GTTGGGGCGTCAACACTTGAACGCCGAGGTGACGTAAACAACCACTACTA
CTACCAATGATATGATGAACGTCTCTCTCTCTCCTCCAAAAGCGGACAAA
ATTGTGCGAAAGGGGGAGAGATGCAAGCAGGGACCTGAAGACAGCCAGCC
TCTCTGTCTACAAAGAGAGCACCTAATTTCAAAGCACACGAACAATATGC
CGTGCATGAGGGGTTTGCACCCAGCGCGATAAGGGGGTGTGGATTTTGAC
CGCCGTTACACCCACAGGCATGCCACGACGTGAAAGAATACATTCTGCAT
TATACGGGCTATCCTAGACGGCTGTCAAGCTGCAGTGAGAGCTGCTTGTT
TGCAGCCTCGCTAAATAGATGGAATGTAGACCGCCTGTCGTGGTCTTGTA
AGGGGTATTTCAAGCAGCCAACGTGCGCGTGCGCAATGCGCTAGCATGCC
CCCGGATGTATGTTGCCTGCTCACGCCGCTGTTCTTAGGCCGCGACTCTT
AGGCCTGGCCATCGTTGGGTCTAGTATGGTTGAAATTGCACCGTTCTGGT
CGTGAAATGGTTTTTAACAAGAATTTTCCTGGTCCACGAAAGACTGGACA
TCCGAGTATGCGGAGTATCTGTCATTGCCATCGAAACAGCAGCATGGGGT
ACACCCCCCTCCCCTCCCTTCCTCTCCCCTTCCCTCCCCTCCCCTCGATC
TCTCCGCTGGTCCAGCGATGCTGGTGCAATGTGGACATGGGGTTACAATT
TGTCCTCGAAGGCGTTCATTCGTAGACGCGGCACGGAGTCACCGGAGATG
AATGAAATATGCGCGCAGCTTTCAACAGTATGTTGTGCAGGATGTTGGGG
AGTGTCATCTGCATCATGCCCTAGTCGAAAGACCGTCGACCTCGCGTCCC
GACGAAGGCGGAATCGAGCGCACGCCACAACTTCGCCGGCCAGGCTCTCA
TCACCAAGCGCGGGGCACCGTAATACATATGGACTGGGGGGGGGTCGGGA
CGGCGCGGTGCCTGACGAGCACATGGCATACCACACCGCCATGCCCATGA
ACTGTTTCATTTAAAAAGGCACGGATTTTGAGGCATGAAAATCCGGGTTC
AGCAAACGTTACCGGCGCAGCGGTGCCGAGCTTTTGCGCTTCTCCTGGGC
ACCGCACTTGAACTTCATCGTGGTCCCTACTCCCTCGCTTGCTTTGAGAA
ATAAAAGTCAAAATAGAGTCGTGGTCCCGGTCAATTAAGCTGACCCCTGT
TTAGCGATGCCCTGTTTTGCGGTTACATTATCCGTTAGCACCGATGCGGC
CCGGCCATGTAAACCATTGTCGGGTTCAGCAAGGATGCCTTGAATAGCGG
TTGTAAATTTCCTGGCACCAAAGTGAACCGCTAAACCGGGACCGCGAATG
TTCAAGACGTATTCGACTGCCGTGAGTGGCCAAACGACGAGCCATGATCT
CTCCATCTCTCCCATGCTCGGGAAACTTTTCAGTTTGGAAGCGCCATTAG
GGGCGGAGTCCAGGAGCCCTATCATTTCTTCCGCTCGATACACTGACGAA
ACGTTCGCGCGCTTTTCCTCAACCGCGGAACAAATCTTGTTGCCTTGGTG
TTGCTGCGGTGCCCCCCCCTCCCCTCCCCCCTCCCCGACGTCCCCGATCT
CGGCAGGGAGAGGTGATGTGCCCGAAGCATCCAAGATCGTGGGTCGAGAA
GAAAAAATTTTTCATCACGAAGAAGCGGGTCTGTCCGTACTGCGAACTGG
AAAGGTGGGGTTACTACGGGCATGATAATTTATTGTCGCGTGTGTTTCCT
GCTCCCTGTGCTCACGGTCCTTCGCTCGTCTCGTGTGCTTGATCATGCTT
CCCTTCGTTTTAGTCCAATTCGTGTCCTCGTGTTGTGCTGACTCTTGACC
TCTCGTTGCCACTCACTCGTCTCTGATGCGGTGGTGTCATCGCTGTACGC
TGTGCCGCGGTTAAACTGTGTTGCGTATGGCGCGGGGGCTGCTCACAACA
CGCGAGCACCTTCTCCGTCGTGCCCATTCCTTCCCCCTCCCAACCCTGTG
CGTCGCTTGTCGGGACAAAAAGAATATGACGGCACGTACAGTTGTGGGAG
AACCGATTTAGAGCAGGCCTGCAGCGTCTTGTCGAATCACATATACAGAC
CAGTCACTTTTGGCGCTCTTGTTAGATGTTCTTGTCAGAAGGCGGTTGCG
CACCAAATTCTAGACCACGCGACGAGAATTCTCCGTGGCACAGTAGCGCT
TAAAGAGTTGATCTTCAAAAGTCAGTCGAGAAAGAGGTTGGAAGTGCCAA
TTGCCGAGCAGAAGAAGGTCCAGGGTCCACCGACCAGACCGAGCTGCAAC
TCCTAGACAAGGTACGCCTAGAAAAGGTACGTCTCACCGTTACTGCCGTG
ACAAGAACAACACAAAGCACAATGCTGGACAACGACCACCCCCAAGACAG
TGGTGAACAAGGCGGCTTGATAACCCCCCCACCAAAAACCAAATGTTCAG
CTACGCTGTTCCGAGGCCCCGATGGAAGTGTTTCCTTGTGGCTTGACCCT
CCCCTGTACCCCTACCTCCCCAACACACACACCAAAATATCCAGCTACGC
TATCCCGAGGCCCGACGGAAGTGTCCCCCGTGAGCCCGGATTCGGAGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:1310159..1314707+

>mRNA_P-fluviatile_contig10.701.1 ID=mRNA_P-fluviatile_contig10.701.1|Name=mRNA_P-fluviatile_contig10.701.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=450bp|location=Sequence derived from alignment at P-fluviatile_contig10:1310159..1314707+ (Porterinema fluviatile SAG_2381)
ATGGAGGCTCCAGTCAAATCTTCGACGCCCCGGCGTCCAAACACGACAGG
AGGCCAGCAAGGCACCAAGTCGATGGAGGCTCCAGTCAAATCTTCGACGC
CCCGGCGTCCAAACACGACAGGAGGCCAGCAAGGCACCAAGTCGGGAGAG
GTGATGTGCCCGAAGCATCCAAGATCGTGGGTCGAGAAGAAAAAATTTTT
CATCACGAAGAAGCGGGTCTGTCCGTACTGCGAACTGGAAAGGGAGAGGT
GATGTGCCCGAAGCATCCAAGATCGTGGGTCGAGAAGAAAAAATTTTTCA
TCACGAAGAAGCGGGTCTGTCCGTACTGCGAACTGGAAAGCTACGCTATC
CCGAGGCCCGACGGAAGTGTCCCCCGTGAGCCCGGATTCGGAGGCCTACG
CTATCCCGAGGCCCGACGGAAGTGTCCCCCGTGAGCCCGGATTCGGAGGC
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