mRNA_P-fluviatile_contig10.644.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.644.1
Unique NamemRNA_P-fluviatile_contig10.644.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig10.644.1 vs. uniprot
Match: A0A6H5JTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTD4_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.740e-49
Identity = 95/142 (66.90%), Postives = 111/142 (78.17%), Query Frame = 1 
Query:  220 MAGVGEDPGGQGKGSGGEWEAELGSQRDVALEMARQLSQQLDGQRETLERRAKTTEALREGARKKFSEALDNRARQRDQTPEVLVRLAGLIGGSLSAWLICVGFGLAWAPRASLALGIPCTLVMAALCSRKLPRPTAKRRSD 645
            M  + E  GG+   + G+WE+ELGSQRDVAL MARQLSQQLD QRETLE RA T EALR+ +R+K SE L++  R RDQ  EV  RLAGL+GGSLSAWL CV  GL WAPR +LALGIPCTLVMAALCS+++P P+ KRRSD
Sbjct:    1 MVNIEEMRGGEEGHTSGDWESELGSQRDVALAMARQLSQQLDSQRETLEGRATTAEALRDFSRQKCSECLESHTR-RDQAAEVPARLAGLVGGSLSAWLFCVALGLTWAPRVALALGIPCTLVMAALCSKRMPWPSVKRRSD 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTD4_9PHAE1.740e-4966.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:606526..609938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-28_003430.1
Exons5
Model size975
Cds size429
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815367.9763405-UTR-P-fluviatile_contig10:606525..6067441622815367.9763405-UTR-P-fluviatile_contig10:606525..606744Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 606526..606744 +
1693561621.1309276-UTR-P-fluviatile_contig10:606525..6067441693561621.1309276-UTR-P-fluviatile_contig10:606525..606744Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 606526..606744 +
1622815368.059116-UTR-P-fluviatile_contig10:609611..6099381622815368.059116-UTR-P-fluviatile_contig10:609611..609938Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 609612..609938 +
1693561621.1823933-UTR-P-fluviatile_contig10:609611..6099381693561621.1823933-UTR-P-fluviatile_contig10:609611..609938Porterinema fluviatile SAG_2381UTRP-fluviatile_contig10 609612..609938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815367.996148-CDS-P-fluviatile_contig10:606744..6068281622815367.996148-CDS-P-fluviatile_contig10:606744..606828Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 606745..606828 +
1693561621.1392646-CDS-P-fluviatile_contig10:606744..6068281693561621.1392646-CDS-P-fluviatile_contig10:606744..606828Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 606745..606828 +
1622815368.011931-CDS-P-fluviatile_contig10:607436..6074721622815368.011931-CDS-P-fluviatile_contig10:607436..607472Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 607437..607472 +
1693561621.1474895-CDS-P-fluviatile_contig10:607436..6074721693561621.1474895-CDS-P-fluviatile_contig10:607436..607472Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 607437..607472 +
1622815368.0263007-CDS-P-fluviatile_contig10:608049..6081541622815368.0263007-CDS-P-fluviatile_contig10:608049..608154Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 608050..608154 +
1693561621.1555476-CDS-P-fluviatile_contig10:608049..6081541693561621.1555476-CDS-P-fluviatile_contig10:608049..608154Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 608050..608154 +
1622815368.038489-CDS-P-fluviatile_contig10:608475..6085981622815368.038489-CDS-P-fluviatile_contig10:608475..608598Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 608476..608598 +
1693561621.1650064-CDS-P-fluviatile_contig10:608475..6085981693561621.1650064-CDS-P-fluviatile_contig10:608475..608598Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 608476..608598 +
1622815368.0479612-CDS-P-fluviatile_contig10:609530..6096111622815368.0479612-CDS-P-fluviatile_contig10:609530..609611Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 609531..609611 +
1693561621.1749425-CDS-P-fluviatile_contig10:609530..6096111693561621.1749425-CDS-P-fluviatile_contig10:609530..609611Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 609531..609611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.644.1prot_P-fluviatile_contig10.644.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 606745..609611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.644.1

>prot_P-fluviatile_contig10.644.1 ID=prot_P-fluviatile_contig10.644.1|Name=mRNA_P-fluviatile_contig10.644.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=143bp
MAGVGEDPGGQGKGSGGEWEAELGSQRDVALEMARQLSQQLDGQRETLER
RAKTTEALREGARKKFSEALDNRARQRDQTPEVLVRLAGLIGGSLSAWLI
CVGFGLAWAPRASLALGIPCTLVMAALCSRKLPRPTAKRRSD*
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mRNA from alignment at P-fluviatile_contig10:606526..609938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.644.1 ID=mRNA_P-fluviatile_contig10.644.1|Name=mRNA_P-fluviatile_contig10.644.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3413bp|location=Sequence derived from alignment at P-fluviatile_contig10:606526..609938+ (Porterinema fluviatile SAG_2381)
TGATGCGCGCTCAAACGCCCCTGCCCACCGCCTTTGAGAGACACAGGCCC
GGACTGTAAACTCTGCACCTCATTCACGGTGTTATTCAGGAGCTTTATGG
AGAGCTTCGACCGGTTCACGGGTATCAGCCAGGACCATCAGCAAATACGT
AGCCAGAGCGCGCTGCCTTTAGCTGTGCTGCTGTAAGCCGGTGTGTTGGT
TGCTCTGTCCGCCAAGGGTATGGCCGGCGTCGGCGAGGACCCGGGGGGGC
AGGGAAAAGGAAGTGGTGGGGAGTGGGAAGCGGAGCTGGGCTCACAACGA
GATGTAGGTGCAAGCTTTGTGTCCATGTTGGGAAATATTGCTAGCAGCAG
AGGCCGCATGTATAGATTCTACTCGATGTGGTGACCGCCTGCATTCGTCA
AGTTGTCACCCGGCGCCAATAGTGTAAGCGCTCCGTGCGGAGGAGCCGCT
TTCATGGTTGAAACTGCCAATTCATCTTCGACATCAATCTTGGGAGCCAA
ATCACAATGAGCACGCCGTTCGTGCGTGCAGGCGTTGATTAGTGTGTGCT
GGTGGGCCCATTTGGTGACACCAGTCGAACCAACGGAGAGAAGGAAAGTA
TTTCGGCGTGATGACACCCAAGGTGAGGATACATTGTCATCGTTCTTGTT
TTCACCCTAGCAGATTTCAAGGAACGGTGAAGAACATTCTCCCATCAATT
CTTTGCAAGGCGGGTAGAAATACACCGCGGCGAGCACCCTTCCTTCGACC
CACAGCCCTTGCCCCACAGCCCTTGCCCCACAGCAGTCATCGAGTGGGTA
GAAGGGTGCCTACCAACGTGCGTTCTAATATCGCCCCGTAAATCGACCCT
TCGTCGTCGCTGCTCGTTGACGGATGAACAACCGGGCCCCATCGATGGTG
CGGTGACCTAGGTTGCGTTGGAGATGGCGCGGCAACTTTCTCAGCAGGTG
GGAGCGGAGACAGGTTGAGAACCACACAGATGAAGGCGTGCCAGTGATCG
TTGCTGTTGTACCCCCTTGCTACCACTCTCCTATTCCCACAAGAAGCGCA
TTAGAGACAAGGCAGAAGGTAACAGGCAAGTAGATCAAAAGGCGGATTGT
TTTTTGGAGCTTGATCCCTAAATTTGCGAAACTCGATCTACGCGATCAAC
TAATACATCGTCGATTGACTCGTCACACTTTTCTCTGAAACGGCCGGATA
TTTCCAAACATTTCTTCTGCATTCTCCCCTAGCGCGCGAAGCTGAAACAA
GCCTTGGTACGATGGTGCGTTCATACGTATTTCCTTTAGAAGCATACCTC
ACGGTGCTGCCAAGCTTTATGTTTCCGAGATTGACAAGGGTGCCTGCCCG
GGGCGGTGCAACCCGACCTGCACTTTTCAATTGCGTTCTTTTCCCCAAGA
GGTGGAAGAATCTTTGTATATCTGAAATGCAAGAACTGCTGCGGCCATCC
ACGTCAGACTCCGAGAGGAACCCCACACACGTGGCCTCCCTCGCCGCTGT
ATAACGAATGCAAACCCCGACCAGTTAGACGGCCAGCGGGAGACGCTGGA
GCGACGGGCGAAGACGACAGAAGCTCTACGGGAGGGCGCCAGAAAAAAGT
TCAGCGAGGCCCTCGACAACAGGGCGAGGGTGAGTATAGGAGGGGCGTTT
CCCGCTCACATCCTGTGTTGCTTCTTTGCTGTGTGTGGTTTTGCAGCCTG
TCCAGGGGCGTGAGGCAAGACACAGTTGCAAAGCAGTCGCACACTTTGAG
CTCACTGAAGGATTTCCGTGGCACCGCACCGCGACACTGATCACTAGTAT
CACAAAATGGAATGAAAAAACAGAAAAACCAATCAGCAGGCGCGCTCGTG
GGTCATGGATACGCATGACCGGTGACCGCGTTCAAAAGTTATGCTTCGCC
GCTCACAAAATGACGTCGTGCGTCTTCCCCTCCTCTTTCACCTGCTGCAG
CAGCGAGATCAAACTCCCGAAGTGCTCGTCAGGTTGGCCGGGCTCATTGG
TGGGTCGCTTTCCGCGTGGCTCATTTGCGTGGGTTTTGGGTTGGCCTGGG
CTCCGCGGGCTTCACTTGCTTTGGTGAGCAAGCTGCATCGTGATTGTGCA
TTTTTGTTGTCATCTTCACATGAAAACCCCTTGTCCGCTCAATCCTGGTA
CCTCCAAGTGCCTGTACCCTATCATGTCGGGGAACGATTCCGTGGTCACA
GGCTATGCAACGGTTGTGATCCCCTTCACTGTTGGGGTTCCACGCTAAAA
GCAAGATCGGTCACAGATATCTAGCACCATACGAAGCGAAATACATGACA
AGCAATGATTGCGATTGTTTGCTCTTGTCAAAGTAAAATTGTCATCGTAA
TTATTCCTCTTTGTGAGATGTAGAACTTGTTGGTATGCCGATTTGTCCCT
GGTAAGTTCGATGGGTGAGCAGTAGATTTGTCCCATATGCGAGCAGTGCA
CCCGATGCCTAATCCAAACCGGGAACGGCAGATTTCATACTTCTATCCAC
ACGATCTTCTCCATATTTCTTTCGCTTTGCGGCGTTCGCTTCACACCGCC
GCTCCGACGCCAGTTTCCAACTTTCAGAAACATCACACGTGATGATTCAC
GCCAGGAAGTCCTCGCCTGTCATTTGTGTCTGCTGTGGGCCCCTCAGCCC
GCCACGGCGTGTACCTGTACAGCCCTTCCCGGTGTAGTTCTGAATCTTTG
CTTTGTTCATCATGGTATGATCGAGATGCCGGATATCGTGAACGCACAAT
CGGCTAAATGTCCAATGCAATGGTCTCTCGGCTGTCCATTCACTTCGAAA
AAGCTGCATTCGTGCGCGTTCATGCCCTGCCTTTGCAAGCGTGCGGGTAG
TTTCGAAGTCGTTACGATGACTCCGAGAGCTCCCCTCTTAAAAAGCCGAT
CGCGGTGGCAAGGCATGCCGTTTGACGCTTCTCGGCATAGCTGTGCCCCC
CCTCTACTTGCCCGGCGTGAAACGTACCCGCCCCTCGCTCCTCCTTGTGT
TGCAGGGGATACCCTGCACGCTGGTGATGGCAGCTCTATGCTCACGGAAA
TTACCACGGCCAACGGCGAAACGACGGTCTGATTAAAAGCACGGGAGGGA
CCTGGGGACATCCGTTGCCGTTCACCTCAGGAGGGGGCCGTTGTCATCAA
ACCGCTTCCTGTAAAAGCAGAGGAGTAGGATCGGGAAGGGAGGCTGTTAT
GGGGTTGCGATTATGCGGCGCTCACCTCCCTTCGTGCTGTTGAAAAGTAA
ACCAAGTGTGCACTCGCATGGAGTTTGCCAAGGGTGCACGACGAATTCTC
ACACTCGCATGGGAAGCGCAACAACAATGTCTCGGAGGCGACTGACTGTT
CCAGGATATCCACGCCTGCCTTGTCGGAGACGAACGCCATATGCACCCGA
GGTACCCCTTGTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:606526..609938+

>mRNA_P-fluviatile_contig10.644.1 ID=mRNA_P-fluviatile_contig10.644.1|Name=mRNA_P-fluviatile_contig10.644.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=858bp|location=Sequence derived from alignment at P-fluviatile_contig10:606526..609938+ (Porterinema fluviatile SAG_2381)
ATGGCCGGCGTCGGCGAGGACCCGGGGGGGCAGGGAAAAGGAAGTGGTGG
GGAGTGGGAAGCGGAGCTGGGCTCACAACGAGATATGGCCGGCGTCGGCG
AGGACCCGGGGGGGCAGGGAAAAGGAAGTGGTGGGGAGTGGGAAGCGGAG
CTGGGCTCACAACGAGATGTTGCGTTGGAGATGGCGCGGCAACTTTCTCA
GCAGGTTGCGTTGGAGATGGCGCGGCAACTTTCTCAGCAGTTAGACGGCC
AGCGGGAGACGCTGGAGCGACGGGCGAAGACGACAGAAGCTCTACGGGAG
GGCGCCAGAAAAAAGTTCAGCGAGGCCCTCGACAACAGGGCGAGGTTAGA
CGGCCAGCGGGAGACGCTGGAGCGACGGGCGAAGACGACAGAAGCTCTAC
GGGAGGGCGCCAGAAAAAAGTTCAGCGAGGCCCTCGACAACAGGGCGAGG
CAGCGAGATCAAACTCCCGAAGTGCTCGTCAGGTTGGCCGGGCTCATTGG
TGGGTCGCTTTCCGCGTGGCTCATTTGCGTGGGTTTTGGGTTGGCCTGGG
CTCCGCGGGCTTCACTTGCTTTGCAGCGAGATCAAACTCCCGAAGTGCTC
GTCAGGTTGGCCGGGCTCATTGGTGGGTCGCTTTCCGCGTGGCTCATTTG
CGTGGGTTTTGGGTTGGCCTGGGCTCCGCGGGCTTCACTTGCTTTGGGGA
TACCCTGCACGCTGGTGATGGCAGCTCTATGCTCACGGAAATTACCACGG
CCAACGGCGAAACGACGGTCTGATTAAGGGATACCCTGCACGCTGGTGAT
GGCAGCTCTATGCTCACGGAAATTACCACGGCCAACGGCGAAACGACGGT
CTGATTAA
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