mRNA_P-fluviatile_contig10.619.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig10.619.1
Unique NamemRNA_P-fluviatile_contig10.619.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig10.619.1 vs. uniprot
Match: A0A6H5JMR3_9PHAE (HTH psq-type domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR3_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 8.870e-66
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    1 LLGRRELRDAVRNVCSDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYNAWAEYLEETKLPPERILNTDETSELGQGLRC 303
            LLGRRELRDAVRN+C+DGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFY AWAEYLEETKLPPERILNTDETSE+   LRC
Sbjct:   94 LLGRRELRDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYKAWAEYLEETKLPPERILNTDETSEVPAALRC 194
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BLAST of mRNA_P-fluviatile_contig10.619.1 vs. uniprot
Match: A0A6H5LAK0_9PHAE (HTH psq-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAK0_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.630e-65
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    1 LLGRRELRDAVRNVCSDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYNAWAEYLEETKLPPERILNTDETSELGQGLRC 303
            LLGRRELRDAVRN+C+DGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFY AWAEYLEETKLPPERILNTDETSE+   LRC
Sbjct:  109 LLGRRELRDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYKAWAEYLEETKLPPERILNTDETSEVPAALRC 209
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BLAST of mRNA_P-fluviatile_contig10.619.1 vs. uniprot
Match: A0A6H5L1T0_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T0_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 3.450e-58
Identity = 92/100 (92.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:    1 LLGRRELRDAVRNVCSDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYNAWAEYLEETKLPPERILNTDETSELGQGLR 300
            LLGRRELRDAVRN+C+DGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFY AWAEYLEETKLPPERILNTDETS   QG +
Sbjct:   94 LLGRRELRDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYKAWAEYLEETKLPPERILNTDETSSTPQGTK 193
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BLAST of mRNA_P-fluviatile_contig10.619.1 vs. uniprot
Match: A0A6H5JH77_9PHAE (S5A_REDUCTASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH77_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 8.540e-58
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:    1 LLGRRELRDAVRNVCSDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYNAWAEYLEETKLPPERILNTDET 276
            LLGRRELRDAVRN+C+DGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFY AWAEYLEETKLPPERILNTDET
Sbjct:   94 LLGRRELRDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYKAWAEYLEETKLPPERILNTDET 185
[Close]
BLAST of mRNA_P-fluviatile_contig10.619.1 vs. uniprot
Match: A0A6H5KQE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE4_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 8.990e-57
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:    1 LLGRRELRDAVRNVCSDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYNAWAEYLEETKLPPERILNTDETS 279
            LLGRRELRDAVRN+C+DGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFY AWAEYLEETKLPPERILNTDET+
Sbjct:   94 LLGRRELRDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYKAWAEYLEETKLPPERILNTDETT 186
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BLAST of mRNA_P-fluviatile_contig10.619.1 vs. uniprot
Match: A0A6H5K5E3_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5E3_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.340e-52
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 1 
Query:    1 LLGRRELRDAVRNVCSDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYNAWAEYLEETKLPPERILNTDETSE 282
            L GRREL+ AVRN+CSDGRKVPW+P KGPGDSWLEGFMARHPGLSERATHIYEANRINED EPRL+AFY A AEYL ETKLPPERILNTDETSE
Sbjct:  220 LSGRRELKYAVRNICSDGRKVPWNPAKGPGDSWLEGFMARHPGLSERATHIYEANRINEDDEPRLEAFYKARAEYLAETKLPPERILNTDETSE 313
[Close]
BLAST of mRNA_P-fluviatile_contig10.619.1 vs. uniprot
Match: A0A6H5JPC4_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC4_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.760e-44
Identity = 69/93 (74.19%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 LLGRRELRDAVRNVCSDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYNAWAEYLEETKLPPERILNTDETS 279
            LLGRREL+DAVR +C DGRKV WDPDKGPGD WL+ F+ RHP L ERATHIYEANRINED E RL+AFY  W  YL ETKL  +RI+NTDETS
Sbjct:   94 LLGRRELKDAVRKICLDGRKVRWDPDKGPGDRWLQWFLKRHPELPERATHIYEANRINEDDESRLEAFYETWDAYLSETKLTSDRIMNTDETS 186
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BLAST of mRNA_P-fluviatile_contig10.619.1 vs. uniprot
Match: A0A6H5JUK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK8_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 4.890e-44
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 LLGRRELRDAVRNVCSDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYNAWAEYLEETKLPPERILNTDETSELG 288
            LLGRREL+DAVRN+CSDGRKVPW+PDKGPGDSWLEG M RHPGLSERATHI EAN INED E RL+AFY AWAEYL ETKLPPE +     ++ +G
Sbjct:  132 LLGRRELKDAVRNICSDGRKVPWNPDKGPGDSWLEGVMTRHPGLSERATHINEANPINEDDERRLEAFYKAWAEYLAETKLPPEXVSAVSVSTAVG 227
[Close]
BLAST of mRNA_P-fluviatile_contig10.619.1 vs. uniprot
Match: A0A6H5KJA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA0_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.240e-42
Identity = 69/95 (72.63%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    1 LLGRRELRDAVRNVCSDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYNAWAEYLEETKLPPERILNTDETSEL 285
            LLGRR L++AVR +  DGRKVPWDPD G GDSWLEGFMA+HPG SE+AT IYEANRINED E RL+AF   W  YL ETKL P+RI+NT ETSEL
Sbjct:   58 LLGRRVLKEAVRKIYIDGRKVPWDPDTGLGDSWLEGFMAKHPGWSEQATLIYEANRINEDDESRLEAFSETWGAYLAETKLTPDRIINTGETSEL 152
[Close]
BLAST of mRNA_P-fluviatile_contig10.619.1 vs. uniprot
Match: A0A6H5KF28_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF28_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.290e-40
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:    1 LLGRRELRDAVRNVCSDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYNAWAEYL 228
            LLGRREL++AVR +  DGRKVPWDPDKGPGDSWLEGFMARHP LSERATHIY+ANRINED EPRL+AFY  W  YL
Sbjct:  109 LLGRRELKEAVRRIYKDGRKVPWDPDKGPGDSWLEGFMARHPELSERATHIYKANRINEDDEPRLEAFYETWEAYL 184
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig10.619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMR3_9PHAE8.870e-6693.07HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5LAK0_9PHAE1.630e-6593.07HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5L1T0_9PHAE3.450e-5892.00Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH77_9PHAE8.540e-5896.74S5A_REDUCTASE domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KQE4_9PHAE8.990e-5795.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5E3_9PHAE1.340e-5288.30HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JPC4_9PHAE1.760e-4474.19HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JUK8_9PHAE4.890e-4476.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KJA0_9PHAE1.240e-4272.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF28_9PHAE4.290e-4081.58HTH psq-type domain-containing protein n=1 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig10contigP-fluviatile_contig10:137718..138026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815363.620896-CDS-P-fluviatile_contig10:137717..1380261622815363.620896-CDS-P-fluviatile_contig10:137717..138026Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 137718..138026 +
1693561614.6767292-CDS-P-fluviatile_contig10:137717..1380261693561614.6767292-CDS-P-fluviatile_contig10:137717..138026Porterinema fluviatile SAG_2381CDSP-fluviatile_contig10 137718..138026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig10.619.1prot_P-fluviatile_contig10.619.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig10 137718..138026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig10.619.1

>prot_P-fluviatile_contig10.619.1 ID=prot_P-fluviatile_contig10.619.1|Name=mRNA_P-fluviatile_contig10.619.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=103bp
LLGRRELRDAVRNVCSDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATH
IYEANRINEDGEPRLQAFYNAWAEYLEETKLPPERILNTDETSELGQGLR
CQ*
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mRNA from alignment at P-fluviatile_contig10:137718..138026+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig10.619.1 ID=mRNA_P-fluviatile_contig10.619.1|Name=mRNA_P-fluviatile_contig10.619.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=309bp|location=Sequence derived from alignment at P-fluviatile_contig10:137718..138026+ (Porterinema fluviatile SAG_2381)
CTGTTGGGTCGGAGGGAGCTGAGAGACGCTGTGCGCAACGTCTGCAGCGA
CGGGCGCAAGGTGCCCTGGGACCCAGACAAGGGCCCTGGGGACAGCTGGC
TTGAGGGGTTTATGGCGAGACACCCGGGTTTGTCGGAGCGAGCCACCCAC
ATCTACGAAGCAAACCGGATTAACGAAGACGGCGAGCCTCGCCTTCAAGC
TTTCTACAACGCATGGGCGGAGTACCTGGAGGAGACCAAGCTCCCGCCGG
AACGCATCCTCAACACGGATGAGACAAGTGAGTTAGGGCAAGGGTTGAGG
TGTCAGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig10:137718..138026+

>mRNA_P-fluviatile_contig10.619.1 ID=mRNA_P-fluviatile_contig10.619.1|Name=mRNA_P-fluviatile_contig10.619.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=618bp|location=Sequence derived from alignment at P-fluviatile_contig10:137718..138026+ (Porterinema fluviatile SAG_2381)
CTGTTGGGTCGGAGGGAGCTGAGAGACGCTGTGCGCAACGTCTGCAGCGA
CGGGCGCAAGGTGCCCTGGGACCCAGACAAGGGCCCTGGGGACAGCTGGC
TTGAGGGGTTTATGGCGAGACACCCGGGTTTGTCGGAGCGAGCCACCCAC
ATCTACGAAGCAAACCGGATTAACGAAGACGGCGAGCCTCGCCTTCAAGC
TTTCTACAACGCATGGGCGGAGTACCTGGAGGAGACCAAGCTCCCGCCGG
AACGCATCCTCAACACGGATGAGACAAGTGAGTTAGGGCAAGGGTTGAGG
TGTCAGTAGCTGTTGGGTCGGAGGGAGCTGAGAGACGCTGTGCGCAACGT
CTGCAGCGACGGGCGCAAGGTGCCCTGGGACCCAGACAAGGGCCCTGGGG
ACAGCTGGCTTGAGGGGTTTATGGCGAGACACCCGGGTTTGTCGGAGCGA
GCCACCCACATCTACGAAGCAAACCGGATTAACGAAGACGGCGAGCCTCG
CCTTCAAGCTTTCTACAACGCATGGGCGGAGTACCTGGAGGAGACCAAGC
TCCCGCCGGAACGCATCCTCAACACGGATGAGACAAGTGAGTTAGGGCAA
GGGTTGAGGTGTCAGTAG
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