mRNA_P-fluviatile_contig1.90.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.90.1
Unique NamemRNA_P-fluviatile_contig1.90.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.90.1 vs. uniprot
Match: A0A6H5JDC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC7_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 4.050e-6
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = -1 
Query:  204 PSDRFHSDVLGQLPQSTDTESSPS--ASITQLLAPFIVGSLRETRDNKVKLDDWIMSLAMGTPVQTTAICSVCP 419
            P+    +DVL  L Q+  T ++PS  A     LAPFI+ SL++ RDNK + + WIM L +G PVQ   +  V P
Sbjct:  128 PTRALAADVLANLQQAATT-AAPSIPAPAGNFLAPFIISSLKQARDNKEEPEPWIMRLVLGAPVQDATLTQVKP 200
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BLAST of mRNA_P-fluviatile_contig1.90.1 vs. uniprot
Match: A0A6H5KID2_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KID2_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.310e-5
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = -1 
Query:  210 PSDRFHSDVLGQLPQSTDTESSPS--ASITQLLAPFIVGSLRETRDNKVKLDDWIMSLAMGTPVQTTAICSV 419
            P+    +DVL  L Q+  T ++PS  A     LAPFI+ SL + RDNK + + WIM L +G PVQ   +  V
Sbjct:  130 PTRALAADVLANLQQAATT-AAPSIPAPAGNFLAPFIISSLEQARDNKEEPEPWIMRLVLGAPVQDATLTQV 200
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDC7_9PHAE4.050e-641.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KID2_9PHAE6.310e-541.67Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1290753..1291366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size614
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.90.1prot_P-fluviatile_contig1.90.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1290999..1291322 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.0493863-UTR-P-fluviatile_contig1:1290752..12909981622815269.0493863-UTR-P-fluviatile_contig1:1290752..1290998Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1290753..1290998 +
1693561319.192456-UTR-P-fluviatile_contig1:1290752..12909981693561319.192456-UTR-P-fluviatile_contig1:1290752..1290998Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1290753..1290998 +
1622815269.0779076-UTR-P-fluviatile_contig1:1291322..12913661622815269.0779076-UTR-P-fluviatile_contig1:1291322..1291366Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1291323..1291366 +
1693561319.3208253-UTR-P-fluviatile_contig1:1291322..12913661693561319.3208253-UTR-P-fluviatile_contig1:1291322..1291366Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1291323..1291366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.0656786-CDS-P-fluviatile_contig1:1290998..12913221622815269.0656786-CDS-P-fluviatile_contig1:1290998..1291322Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1290999..1291322 +
1693561319.2694452-CDS-P-fluviatile_contig1:1290998..12913221693561319.2694452-CDS-P-fluviatile_contig1:1290998..1291322Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1290999..1291322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.90.1

>prot_P-fluviatile_contig1.90.1 ID=prot_P-fluviatile_contig1.90.1|Name=mRNA_P-fluviatile_contig1.90.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
MARLIIQSSSLTLLSLVSLKLPTMNGARSCVMEADGEDSVSVDCGSWPRT
SEWNRSDGILRLPGFHRMSLFVIEAAAVSSESRTNLIGLFDWRDRHKTGC
GFPKDEL*
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mRNA from alignment at P-fluviatile_contig1:1290753..1291366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.90.1 ID=mRNA_P-fluviatile_contig1.90.1|Name=mRNA_P-fluviatile_contig1.90.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=614bp|location=Sequence derived from alignment at P-fluviatile_contig1:1290753..1291366+ (Porterinema fluviatile SAG_2381)
GTCGAGGTCAGTCCTGAATAATGAAGAACTGTGTGGTGTGTCTTGTATCT
CTGAGGTTAGGAAACTAACACGAGGGCTCCTCAGAACACAAACAAACTCC
CTCGATTGGACGAGGGTTCCACAGATGCAGAGGATCTCTCCTCTTTTATG
CTCCCCTTGCGTGTCTAACACAAAGGTTAATGCCATCTTCCCCTTCCAAG
TAAAGGACATACCGAACAGATTGCTGTGGTTTGCACCGGTGTTCCCATGG
CGAGACTCATAATCCAGTCATCCAGCTTGACCTTGTTGTCTCTGGTTTCC
CTCAAGCTCCCCACGATGAACGGTGCCAGAAGTTGCGTGATGGAAGCAGA
CGGCGAGGACTCGGTGTCGGTGGATTGCGGGAGTTGGCCAAGGACATCGG
AGTGGAATCGGTCGGACGGGATTCTCCGTCTTCCCGGCTTCCATCGGATG
AGTCTGTTCGTGATAGAGGCTGCTGCTGTCTCGTCTGAATCACGGACCAA
TCTGATTGGACTATTTGATTGGCGGGACCGTCATAAGACTGGTTGTGGGT
TTCCCAAAGACGAGTTGTAGAATGTTCACCAAGCTTTCTATCGGTGATAT
AGGAACATTGCTTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1290753..1291366+

>mRNA_P-fluviatile_contig1.90.1 ID=mRNA_P-fluviatile_contig1.90.1|Name=mRNA_P-fluviatile_contig1.90.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig1:1290753..1291366+ (Porterinema fluviatile SAG_2381)
ATGGCGAGACTCATAATCCAGTCATCCAGCTTGACCTTGTTGTCTCTGGT
TTCCCTCAAGCTCCCCACGATGAACGGTGCCAGAAGTTGCGTGATGGAAG
CAGACGGCGAGGACTCGGTGTCGGTGGATTGCGGGAGTTGGCCAAGGACA
TCGGAGTGGAATCGGTCGGACGGGATTCTCCGTCTTCCCGGCTTCCATCG
GATGAGTCTGTTCGTGATAGAGGCTGCTGCTGTCTCGTCTGAATCACGGA
CCAATCTGATTGGACTATTTGATTGGCGGGACCGTCATAAGACTGGTTGT
GGGTTTCCCAAAGACGAGTTGTAGATGGCGAGACTCATAATCCAGTCATC
CAGCTTGACCTTGTTGTCTCTGGTTTCCCTCAAGCTCCCCACGATGAACG
GTGCCAGAAGTTGCGTGATGGAAGCAGACGGCGAGGACTCGGTGTCGGTG
GATTGCGGGAGTTGGCCAAGGACATCGGAGTGGAATCGGTCGGACGGGAT
TCTCCGTCTTCCCGGCTTCCATCGGATGAGTCTGTTCGTGATAGAGGCTG
CTGCTGTCTCGTCTGAATCACGGACCAATCTGATTGGACTATTTGATTGG
CGGGACCGTCATAAGACTGGTTGTGGGTTTCCCAAAGACGAGTTGTAG
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