mRNA_P-fluviatile_contig1.87.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig1.87.1
Unique Name	mRNA_P-fluviatile_contig1.87.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

[Close]

BLAST of mRNA_P-fluviatile_contig1.87.1 vs. uniprot
Match: D8LE05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE05_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 3.830e-31
Identity = 86/161 (53.42%), Postives = 97/161 (60.25%), Query Frame = 3

Query: 1053 MEVARFVIYLAVPVVVIEICSDPKNMNKLLRGLKFVEYPPEAPGAKKFPSGGEIVKMMEEREAKRRVAAARSGVDAHMAAVGATKQVPFVVDFSSPTALLFPSAPFPLRTASAQQSSAPAISDTTIDATAAVQPDPK-SPSPDESQPPIKGKK-GWFGGWR 1529
            ME+ARF +Y++VPVVVI ICSDPKNMN LLRG KFVEYPPE+   KK PSG EIV+MMEEREAKRR AA RSG+DAH+AA GA  + P                    RT            DTT+DATA V P P  S   D+S      KK GWF  WR
Sbjct:    1 MEMARFFMYVSVPVVVITICSDPKNMNTLLRGFKFVEYPPES---KKLPSGKEIVEMMEEREAKRRTAATRSGMDAHLAAAGAVTRTPTS-----------------RRT------------DTTLDATATVPPTPDASREVDQSAAGTASKKRGWFS-WR 128

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig1.87.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig1.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LE05_ECTSI	3.830e-31	53.42	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig1	contig	P-fluviatile_contig1:1251100..1254781 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-05_004550.1
Exons	4
Model size	2466
Cds size	519
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig1.87.1	prot_P-fluviatile_contig1.87.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig1 1252113..1253847 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815284.4371486-UTR-P-fluviatile_contig1:1251099..1252112	1622815284.4371486-UTR-P-fluviatile_contig1:1251099..1252112	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 1251100..1252112 +
1693561386.16958-UTR-P-fluviatile_contig1:1251099..1252112	1693561386.16958-UTR-P-fluviatile_contig1:1251099..1252112	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 1251100..1252112 +
1622815284.491963-UTR-P-fluviatile_contig1:1253847..1254781	1622815284.491963-UTR-P-fluviatile_contig1:1253847..1254781	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 1253848..1254781 +
1693561386.2100441-UTR-P-fluviatile_contig1:1253847..1254781	1693561386.2100441-UTR-P-fluviatile_contig1:1253847..1254781	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 1253848..1254781 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815284.4480433-CDS-P-fluviatile_contig1:1252112..1252185	1622815284.4480433-CDS-P-fluviatile_contig1:1252112..1252185	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 1252113..1252185 +
1693561386.1782234-CDS-P-fluviatile_contig1:1252112..1252185	1693561386.1782234-CDS-P-fluviatile_contig1:1252112..1252185	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 1252113..1252185 +
1622815284.4603937-CDS-P-fluviatile_contig1:1252875..1252937	1622815284.4603937-CDS-P-fluviatile_contig1:1252875..1252937	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 1252876..1252937 +
1693561386.1857922-CDS-P-fluviatile_contig1:1252875..1252937	1693561386.1857922-CDS-P-fluviatile_contig1:1252875..1252937	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 1252876..1252937 +
1622815284.470979-CDS-P-fluviatile_contig1:1253223..1253385	1622815284.470979-CDS-P-fluviatile_contig1:1253223..1253385	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 1253224..1253385 +
1693561386.1936083-CDS-P-fluviatile_contig1:1253223..1253385	1693561386.1936083-CDS-P-fluviatile_contig1:1253223..1253385	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 1253224..1253385 +
1622815284.4823234-CDS-P-fluviatile_contig1:1253625..1253847	1622815284.4823234-CDS-P-fluviatile_contig1:1253625..1253847	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 1253626..1253847 +
1693561386.2015955-CDS-P-fluviatile_contig1:1253625..1253847	1693561386.2015955-CDS-P-fluviatile_contig1:1253625..1253847	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 1253626..1253847 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig1:1251100..1254781+
coding sequence from alignment at P-fluviatile_contig1:1251100..1254781+

protein sequence of mRNA_P-fluviatile_contig1.87.1

>prot_P-fluviatile_contig1.87.1 ID=prot_P-fluviatile_contig1.87.1|Name=mRNA_P-fluviatile_contig1.87.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=173bp
MRWMHPNPRKRYGMEVARFVIYLAVPVVVIEICSDPKNMNKLLRGLKFVE
YPPEAPGAKKFPSGGEIVKMMEEREAKRRVAAARSGVDAHMAAVGATKQV
PFVVDFSSPTALLFPSAPFPLRTASAQQSSAPAISDTTIDATAAVQPDPK
SPSPDESQPPIKGKKGWFGGWR*

mRNA from alignment at P-fluviatile_contig1:1251100..1254781+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig1.87.1 ID=mRNA_P-fluviatile_contig1.87.1|Name=mRNA_P-fluviatile_contig1.87.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3682bp|location=Sequence derived from alignment at P-fluviatile_contig1:1251100..1254781+ (Porterinema fluviatile SAG_2381)
ACTAGAAGCCGTGGAGGAGCCAAGATCAGAAACGCGCATCAACGCTTCCT
TGAAAAGACCGCGTACAATCCGCGAGCTCAGGTGTTTTTCAGCATTCGGA
CCTTTGTGCTGTACCCTCGGGTGTCAACGCTTTTTCACCGCGTCGGCTAT
GGGTATTTTCTTCTTATTCGAACGTGTTTGAAGAACAAACTATGAAGATA
AGTTCTGCTGTGGCGAGATCACAGCCACACCATTCTGTAGCGTGTGCGAC
TGATTCGGAGACCGCCCTTCATCAAATACATTTCTCGATTCTTGAAATGC
AGGTGCTCACAACAGCATCATCAGAAGGGAGAACGATGTCAATTGGACGA
GTTCCACGCCAAACTTGGCGATACATGGCACAAGCGGCGAGAGCAGGCGA
CCCCGCGAGTAGCAAACCACTAGCTGGGTGCTGTGGAGTCATGATGAATG
AATTGGGCATAGTCGGGCAGCACCACAAAGTTCGCGACGAACCGCCCTCT
CTTCTCTTCATCACGTGACCTACTCTCCAACCTAAGGCCAGACAAGGCCG
GCTGTACTAAAACACAAATTTTGTACAGGGGATTTGCTCAAGAGCGAATG
AAGAGCACATACAAATTTCTTTTGGGATGCCGGCGATCGAGCTCCTTATT
TCTCTCCTTTCGTCGTCATCGTTCACTTTGCGGCGTCTCGTCTCTGCATC
ACGTGACCCACTCTCCTATAGATATATTGGGGGTACTCGTAGCATAGTAT
GACGGATAGGATCTTCAGTACGTACGTACGTACACTCCCAACACACAGAA
CTGGGCCACCCGAATTATCGAATATCTCCAACCGTGGGCTGGCCAAGCCG
GCTGTACTCGCACACATGTGTTTTTCAAGGGTTTTTATTATAGAGCGAAT
GAAAAGCACATACAAGTTTCCTCTGGGATGCCTGCGATCGAATCTCCTTC
TTTCTCTTCCTTCGTCATGATCGTTCATTTCGGACGGCAGGGACAACCAG
GTACGCAGGGAACATGCGGTGGATGCACCCCAACCCCCGTAAGAGGTACG
GCATGGAAGTTGCCCGGTTCGTGATCTACCTCGCCGGTGAGTGATTTCCC
CTGAGTTAATCAGCAACCATGTTCTGAGGTTGCTTCAGACACTTGAACCA
CGGTCGCCTGTTTTGCGAAAGCCAGACACAGGCAGATAGATCAGTGACTG
GGGTAGGTGCCCTGCTGCCGAGATCGAACAACTACAAGTACGGTGTGCCC
GTTTCTCTTGCACACGCTGCCTTTAGTTGCGTTATTGAATGTGTTGAAAA
AGCTCGTTCGACTTGCCTCGCCGTACGCAGTCCGCGTTCACAAGTGAAAC
GAAGGTGTACGCTTAAAGGGTGTCAGCGCTGCGTTCACTTCCTCCATCGG
GTCCAGAGGGCCGAGGCATGCTTATGATGGATACAGATAGAAATTATCAC
CTCCTGCTCTGCCTGCTGTCCGTAGAAGCTTAACGAGAAGCTATCTGCTT
CAAGCGTGCACAAGCCTCGTGCGTTTTCTCTAGATTGCCTCATGCTTCCA
AATTGACTTGCTTCCACTGTATTATGTTTGAGGACAGAGGAGTAAAATGC
CGTAAACGGTTTCCCATGACTGCTACGGAGGTGATTCTCGATGAGGTAAG
GCCTGTTTTGTTGGGTAGATCCCGCTACACACAAATTCCGACGCGAGTCC
CTGCCTATTCCTCCCCCCCCCCCCCTGCCACTCCCGTCTGTTTCGACGTT
TTCGTGGTTGcCCCCGCCTCGTGCAGTGCCTGTGGTCGTGATCGAGATAT
GCAGCGATCCCAAGAACATGAATAAGTTGCTACGAGGGGTGAGGAGCATC
AGTTTAATAAGCAGTCTCGTCCGTGGATTGTGCAGAGGACATAATGCCGC
CCGTCTTGCTGATTGCAGTCTCGAAATCAGGCCTGTTGACTTTTTTTTTA
TTTGAACCGCTTCGAAATACGTCCCCGAACCAAAGACGTCATGTGTCGGC
AAAACGTCCAACTAGGCGCCCACGTGTTTTGTTCCGTCAGTCTCCGTTCG
TTTTCGACCTCTTGTGACTTAGATGCCGTATATTTCAAACCCGCGTCCCT
GTTTTCCCGCTCGCTACGTTTCAGCTTAAGTTTGTTGAGTACCCGCCGGA
GGCGCCGGGGGCAAAAAAGTTCCCATCGGGGGGTGAGATCGTGAAGATGA
TGGAGGAGAGAGAGGCGAAGAGGCGAGTGGCGGCGGCAAGATCAGGAGTC
GATGCGCACATGGCGGCTGTAGGAGCAACGAAACAGGTAAGGGCATGTAG
CAAAGGGATCAAGCAAGGCACGCGCGGTAGTCGGTCCATTCTCTGTGAAT
CTTCAACTTTGCTGCGACTTCAAGCCGGCGGAGAAAAGGCCGGTGGTTGG
TCGCGTAGTGTAGAGTTTTGGGCTTGCCGAACCCAAGCGCCTCCATCCTT
GTCCTAACAAACCATCCTTGTCCTAACAAAACATTCTCCGCGGTATCTGC
TTGCCTCTCTACACAAATGGTAACAGGTTCCTTTCGTTGTCGATTTCTCT
TCCCCTACTGCATTGCTGTTCCCCTCGGCTCCATTTCCCCTTCGAACGGC
GTCGGCGCAGCAATCGTCCGCACCAGCAATATCCGATACCACTATCGACG
CCACCGCGGCCGTACAGCCGGATCCCAAGTCTCCATCACCCGACGAGAGT
CAACCGCCCATTAAGGGAAAGAAGGGGTGGTTTGGCGGTTGGCGATGAAC
ACTGACCGCCAAGCGGTCAGTTTCTCACGTCCTTCTTGTTATATTGCTCT
CGCCTCAAGCCAAGGCCACTTGAGCGTTTGCCCTAGAGCTGGCTCACTCC
CCGGTGTGAGTGGGACAAGCCTGGTGATGAGTCCAGTGTTGCAACGGGTA
GACAAGCGTAGAATTCGAGGGTCCCTCTCCCAAAACGTGGTGCAAGCTGC
GCCTTCAAGCATCAAACGGGTAGCTTCATGTTCCTAACGTGAGTGGTTTT
AGCGGTTCCATTGGTAAAGCCTTGGAAATACTCCGGAGTACAACATTATA
CGGGCGAGGTAGGCTTCAGTGAAGTGCAGGGGCACGATAATCTGGCCTTC
ACTATTTGTCTGTAGCACTCAAGATGGATATTGTTCTTAGACCTATTCTT
GGCCCCTAGATCCGTCGTGTGCTCGAGAGTTTGGAAGAATGAGAATCTCG
TTGACGGCGAGATGGAGGGGTGAGACAGTCGCGAGGACAATGACAACGCG
TGACGTTTTTCAAAAAGCCTTGATGGCGTATACCCTACTTGCGTCGCCCT
CGGCCCAAGAGGGCATGGACGCACGTACGCTACTTTTCGGTTGGGTGTTT
GAAGACGTAGTTTTTGCGGGGTGCTCCGCTTCATATCAAACGTAGCTTGC
CAGTTGCATTTGCATGGGACGCACCGCCACATGTCTCTCGCGGATGCATC
GGATCTGACGCTGCCCAGATATAATGCACAGCCGATCGACGGGCAAAGCT
CGTGACGGCATTTCCCCAAGGCATCGCGATGTCATGGAAGCAAGCGAAGC
GAAAGGGCAAACGTTGAAATTCGAAGGGCGTCCACAAATCACGATAGGGC
ATCCTTTGTCACCGTACGAGACACCGTCATTAGAAGATCAAGCTATAACA
GCTAGTTTGTGGCATCGACACGCGGAAAGAGG

Coding sequence (CDS) from alignment at P-fluviatile_contig1:1251100..1254781+

>mRNA_P-fluviatile_contig1.87.1 ID=mRNA_P-fluviatile_contig1.87.1|Name=mRNA_P-fluviatile_contig1.87.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1038bp|location=Sequence derived from alignment at P-fluviatile_contig1:1251100..1254781+ (Porterinema fluviatile SAG_2381)
ATGCGGTGGATGCACCCCAACCCCCGTAAGAGGTACGGCATGGAAGTTGC
CCGGTTCGTGATCTACCTCGCCGATGCGGTGGATGCACCCCAACCCCCGT
AAGAGGTACGGCATGGAAGTTGCCCGGTTCGTGATCTACCTCGCCGTGCC
TGTGGTCGTGATCGAGATATGCAGCGATCCCAAGAACATGAATAAGTTGC
TACGAGGGTGCCTGTGGTCGTGATCGAGATATGCAGCGATCCCAAGAACA
TGAATAAGTTGCTACGAGGGCTTAAGTTTGTTGAGTACCCGCCGGAGGCG
CCGGGGGCAAAAAAGTTCCCATCGGGGGGTGAGATCGTGAAGATGATGGA
GGAGAGAGAGGCGAAGAGGCGAGTGGCGGCGGCAAGATCAGGAGTCGATG
CGCACATGGCGGCTGTAGGAGCAACGAAACAGCTTAAGTTTGTTGAGTAC
CCGCCGGAGGCGCCGGGGGCAAAAAAGTTCCCATCGGGGGGTGAGATCGT
GAAGATGATGGAGGAGAGAGAGGCGAAGAGGCGAGTGGCGGCGGCAAGAT
CAGGAGTCGATGCGCACATGGCGGCTGTAGGAGCAACGAAACAGGTTCCT
TTCGTTGTCGATTTCTCTTCCCCTACTGCATTGCTGTTCCCCTCGGCTCC
ATTTCCCCTTCGAACGGCGTCGGCGCAGCAATCGTCCGCACCAGCAATAT
CCGATACCACTATCGACGCCACCGCGGCCGTACAGCCGGATCCCAAGTCT
CCATCACCCGACGAGAGTCAACCGCCCATTAAGGGAAAGAAGGGGTGGTT
TGGCGGTTGGCGATGAGTTCCTTTCGTTGTCGATTTCTCTTCCCCTACTG
CATTGCTGTTCCCCTCGGCTCCATTTCCCCTTCGAACGGCGTCGGCGCAG
CAATCGTCCGCACCAGCAATATCCGATACCACTATCGACGCCACCGCGGC
CGTACAGCCGGATCCCAAGTCTCCATCACCCGACGAGAGTCAACCGCCCA
TTAAGGGAAAGAAGGGGTGGTTTGGCGGTTGGCGATGA