mRNA_P-fluviatile_contig1.85.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.85.1
Unique NamemRNA_P-fluviatile_contig1.85.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.85.1 vs. uniprot
Match: A0A6H5KRV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.080e-14
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   28 VVGLEENGIGEGELQAVHHLALL------SREAGAKERGGEVVV---------EVMSIDTDEWVACFLMYAVFPSTRNTRVIVRQQHG 246
            ++ LE NGIGEGELQA+HH  +       SR  G + R G VVV         EV+S+DTD W+A  L YAV PSTR+ R+IVRQQ G
Sbjct:  849 IILLEANGIGEGELQALHHAYMTGKNNKESRGQGGEVREGGVVVPTSEDPVTVEVVSVDTDVWMAALLAYAVHPSTRDVRIIVRQQSG 936
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BLAST of mRNA_P-fluviatile_contig1.85.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.600e-13
Identity = 44/91 (48.35%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:   28 VVGLEENGIGEGELQAVHHLALLSREAG--AKERGGE--------------VVVEVMSIDTDEWVACFLMYAVFPSTRNTRVIVRQQHGTN 252
            ++G E NGIGEGELQA+HH  L+ R AG    E GG               V VEV+SI  D WVA  L YA++P  R  RV+VRQQ G N
Sbjct:  235 IIGDEGNGIGEGELQALHHAYLVGRTAGPLTGEGGGSSSENNQEGQGETPPVRVEVVSIHRDVWVAALLAYALYPHIRIVRVVVRQQSGLN 325
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BLAST of mRNA_P-fluviatile_contig1.85.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.670e-12
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:   40 EENGIGEGELQAVHHL--ALLSREAGAKERGGE-------VVVEVMSIDTDEWVACFLMYAVFPSTRNTRVIVRQQHG 246
            ++NG+GEGELQA+HH+    L +++    R G+       V VEV+S+DTD WVA  L YA  P TRN RV+VR+Q G
Sbjct:  463 KDNGLGEGELQALHHVYQVCLQQQSREGSREGQEAGVREPVRVEVVSVDTDVWVAALLAYAAHPWTRNVRVVVRKQSG 540
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BLAST of mRNA_P-fluviatile_contig1.85.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.750e-12
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:   40 EENGIGEGELQAVHHL--ALLSREAGAKERGGE-------VVVEVMSIDTDEWVACFLMYAVFPSTRNTRVIVRQQHG 246
            ++NG+GEGELQA+HH+    L +++    R G+       V VEV+S+DTD WVA  L YA  P TRN RV+VR+Q G
Sbjct:  957 KDNGLGEGELQALHHVYQVCLQQQSREGSREGQEAGVREPVRVEVVSVDTDVWVAALLAYAAHPWTRNVRVVVRKQSG 1034
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BLAST of mRNA_P-fluviatile_contig1.85.1 vs. uniprot
Match: A0A6H5KUA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA8_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.020e-8
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:  133 VVVEVMSIDTDEWVACFLMYAVFPSTRNTRVIVRQQHG 246
            V+VEV S+DTD W+A  L YAV PSTR+ R+IVRQQ G
Sbjct:    8 VIVEVFSVDTDVWIAALLSYAVHPSTRDVRIIVRQQSG 45
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BLAST of mRNA_P-fluviatile_contig1.85.1 vs. uniprot
Match: A0A6H5KC27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC27_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 4.750e-8
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:  133 VVVEVMSIDTDEWVACFLMYAVFPSTRNTRVIVRQQHG 246
            V+VEV S+DTD W+A  L YAV PSTR+ R+IVRQQ G
Sbjct:   30 VIVEVFSVDTDVWIAALLAYAVHPSTRDVRIIVRQQSG 67
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BLAST of mRNA_P-fluviatile_contig1.85.1 vs. uniprot
Match: A0A6H5KNX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX6_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.290e-7
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  133 VVVEVMSIDTDEWVACFLMYAVFPSTRNTRVIVRQ 237
            V+VEV S+DTD W+A  L YAV PSTR+ R+IVRQ
Sbjct:   30 VIVEVFSVDTDVWIAALLAYAVHPSTRDVRIIVRQ 64
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KRV8_9PHAE2.080e-1451.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KUZ3_9PHAE8.600e-1348.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA3_9PHAE5.670e-1248.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE5_9PHAE5.750e-1248.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA8_9PHAE3.020e-865.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC27_9PHAE4.750e-865.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX6_9PHAE2.290e-765.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1223744..1224334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size263
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815263.2802799-CDS-P-fluviatile_contig1:1223745..12239451622815263.2802799-CDS-P-fluviatile_contig1:1223745..1223945Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1223746..1223945 -
1693561248.0725672-CDS-P-fluviatile_contig1:1223745..12239451693561248.0725672-CDS-P-fluviatile_contig1:1223745..1223945Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1223746..1223945 -
1622815263.2919092-CDS-P-fluviatile_contig1:1224273..12243341622815263.2919092-CDS-P-fluviatile_contig1:1224273..1224334Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1224274..1224334 -
1693561248.2918787-CDS-P-fluviatile_contig1:1224273..12243341693561248.2918787-CDS-P-fluviatile_contig1:1224273..1224334Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1224274..1224334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.85.1prot_P-fluviatile_contig1.85.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1223746..1224334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.85.1

>prot_P-fluviatile_contig1.85.1 ID=prot_P-fluviatile_contig1.85.1|Name=mRNA_P-fluviatile_contig1.85.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=87bp
SADGVNTGAVVGLEENGIGEGELQAVHHLALLSREAGAKERGGEVVVEVM
SIDTDEWVACFLMYAVFPSTRNTRVIVRQQHGTNPGS
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mRNA from alignment at P-fluviatile_contig1:1223744..1224334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.85.1 ID=mRNA_P-fluviatile_contig1.85.1|Name=mRNA_P-fluviatile_contig1.85.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=591bp|location=Sequence derived from alignment at P-fluviatile_contig1:1223744..1224334- (Porterinema fluviatile SAG_2381)
TCTGCCGACGGTGTAAACACTGGTGCGGTTGTGGGGCTTGAGGAAAACGG
CATCGGAGAAGGTGTGTTTTGCTGCTTTAGAAGGCTTGATCCCTGGTGAG
ACTCGTATCTCACCTCGTAGCTTTGCCTTCTGTTGCTTGCGGAAAAGTTC
GCTGGATGGAGGATGAACTGAGTTGTGGGTGCAGGGCGCTGTAAGGATTT
GGTATCCTCCAGGTAGATTGCTGACCATCCAATCGGGGATTTCTGGATCT
GTATTCCTGTATTTCACGCAGTTTTTACTTGCTTTAAACAAGTACGCACG
CGCTCTACCTCCAAACCACGCGATCCGGTCGTCTGAACAAATGCCTACTA
GATTCTTGTCACTGTTGTCACACCCCGCCGCCGTAACAGGTGAACTGCAG
GCGGTGCATCACCTCGCCTTGTTGTCTCGAGAGGCTGGTGCGAAGGAGAG
GGGGGGAGAGGTGGTGGTGGAGGTTATGTCGATTGATACGGATGAATGGG
TGGCATGTTTCCTGATGTACGCCGTTTTCCCGTCCACGCGCAACACCCGC
GTCATCGTACGACAGCAACATGGGACCAACCCCGGTTCAAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1223744..1224334-

>mRNA_P-fluviatile_contig1.85.1 ID=mRNA_P-fluviatile_contig1.85.1|Name=mRNA_P-fluviatile_contig1.85.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=522bp|location=Sequence derived from alignment at P-fluviatile_contig1:1223744..1224334- (Porterinema fluviatile SAG_2381)
TCTGCCGACGGTGTAAACACTGGTGCGGTTGTGGGGCTTGAGGAAAACGG
CATCGGAGAAGTCTGCCGACGGTGTAAACACTGGTGCGGTTGTGGGGCTT
GAGGAAAACGGCATCGGAGAAGGTGAACTGCAGGCGGTGCATCACCTCGC
CTTGTTGTCTCGAGAGGCTGGTGCGAAGGAGAGGGGGGGAGAGGTGGTGG
TGGAGGTTATGTCGATTGATACGGATGAATGGGTGGCATGTTTCCTGATG
TACGCCGTTTTCCCGTCCACGCGCAACACCCGCGTCATCGTACGACAGCA
ACATGGGACCAACCCCGGTTCAGTGAACTGCAGGCGGTGCATCACCTCGC
CTTGTTGTCTCGAGAGGCTGGTGCGAAGGAGAGGGGGGGAGAGGTGGTGG
TGGAGGTTATGTCGATTGATACGGATGAATGGGTGGCATGTTTCCTGATG
TACGCCGTTTTCCCGTCCACGCGCAACACCCGCGTCATCGTACGACAGCA
ACATGGGACCAACCCCGGTTCA
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