mRNA_P-fluviatile_contig1.74.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.74.1
Unique NamemRNA_P-fluviatile_contig1.74.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.74.1 vs. uniprot
Match: A0A6H5JC63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC63_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.890e-10
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   46 RSDPGVSRGQQRFVEDRRGDLDNLSFGGFYRLDVPLYDGVGDSA 177
            RS    SRGQ+ F+EDRRGD DN+SFG FYRLDVPLYDG+ D+A
Sbjct:  144 RSKSADSRGQKLFIEDRRGDPDNMSFGKFYRLDVPLYDGMNDAA 187
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BLAST of mRNA_P-fluviatile_contig1.74.1 vs. uniprot
Match: D7FJJ4_ECTSI (Similar to Uncharacterized protein C14orf102 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ4_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.160e-5
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   94 RRGDLDNLSFGGFYRLDVPLYDGVGDSARNPE 189
            RRGD DNLSFG FYRLDVPLYDG+ D+A   E
Sbjct:   14 RRGDPDNLSFGKFYRLDVPLYDGMNDAAGQTE 45
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC63_9PHAE2.890e-1070.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJJ4_ECTSI1.160e-575.00Similar to Uncharacterized protein C14orf102 homol... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1133577..1134905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size326
Cds size213
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.74.1prot_P-fluviatile_contig1.74.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1133577..1134792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815263.2062948-CDS-P-fluviatile_contig1:1133576..11336711622815263.2062948-CDS-P-fluviatile_contig1:1133576..1133671Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1133577..1133671 +
1693561247.821429-CDS-P-fluviatile_contig1:1133576..11336711693561247.821429-CDS-P-fluviatile_contig1:1133576..1133671Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1133577..1133671 +
1622815263.2189171-CDS-P-fluviatile_contig1:1133820..11339041622815263.2189171-CDS-P-fluviatile_contig1:1133820..1133904Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1133821..1133904 +
1693561247.9417243-CDS-P-fluviatile_contig1:1133820..11339041693561247.9417243-CDS-P-fluviatile_contig1:1133820..1133904Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1133821..1133904 +
1622815263.2313626-CDS-P-fluviatile_contig1:1134758..11347921622815263.2313626-CDS-P-fluviatile_contig1:1134758..1134792Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1134759..1134792 +
1693561247.9581032-CDS-P-fluviatile_contig1:1134758..11347921693561247.9581032-CDS-P-fluviatile_contig1:1134758..1134792Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1134759..1134792 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815263.2434623-UTR-P-fluviatile_contig1:1134792..11349051622815263.2434623-UTR-P-fluviatile_contig1:1134792..1134905Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1134793..1134905 +
1693561248.0564904-UTR-P-fluviatile_contig1:1134792..11349051693561248.0564904-UTR-P-fluviatile_contig1:1134792..1134905Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1134793..1134905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.74.1

>prot_P-fluviatile_contig1.74.1 ID=prot_P-fluviatile_contig1.74.1|Name=mRNA_P-fluviatile_contig1.74.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=71bp
QNRNDGNNDEELSRSRSDPGVSRGQQRFVEDRRGDLDNLSFGGFYRLDVP
LYDGVGDSARNPEPGEASLG*
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mRNA from alignment at P-fluviatile_contig1:1133577..1134905+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.74.1 ID=mRNA_P-fluviatile_contig1.74.1|Name=mRNA_P-fluviatile_contig1.74.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1329bp|location=Sequence derived from alignment at P-fluviatile_contig1:1133577..1134905+ (Porterinema fluviatile SAG_2381)
CAAAACAGGAACGACGGCAACAACGACGAGGAGTTGTCACGAAGCCGTTC
GGACCCGGGAGTTTCGCGCGGCCAGCAGCGATTTGTAGAAGACAGGTACT
TACTTTCCCGCGGACATGGTATCTGGCACGCTGTTGCAATTCCTCACAAA
TACGTATCACTGCGTGTATTCCTTGCCGTCCTCTCGCCTCTTGATGTTCC
ATTAGTTTCTGCGTTCATCGCGCGTCTCAACTTGTGATTCACAGGCGCGG
TGATCTGGACAACCTATCATTTGGAGGCTTTTACCGGCTTGACGTGCCGC
TGTATGACGGCGTAGGCGACTCTGCTCGGTGAGTGCTTCCCTCCTTTGGA
AACGAGAAAAACTTACAAAACGCGCTCAAAAGCTTAAAAAAACATGCCAA
GACTTTCGGCATTCTTCACAGTTTTTTTTATGATGTCCAACAATCGCGTC
CTTGGTGCAGGATTGGAGTTACCGTAGGTGGACCGGAATAGTGGCATGTA
GTGGCAAGAGGACAAAATGCCACTACTCTATCGGATAAGAAGCTTTGATG
TTCACGATATCGACAGCATTTCATTGGATCAACACTCATGTGCGCTGTAT
ACGTACAGGTGAATGCCATGTAGTGCTGCACTCCTCGTGGTTGAACATTT
GTGTGCAGCAGTATTCGCATGAACTGCTTTAAACGGCACTTGATTGTTCA
AGGGTCTTCTGTGTGGTCAAAACCCATTTTTCTGTGCAAACAAACTGCAG
GAACCACGTCCAAACGCATTGTATGATCCACGCTTTTTTTTATCCTCAGA
ACTCGTAGAATCATTCTACGTAAAAACGCGAAACCAACTAGAGCAACCGT
GTCACCAAAAGTCAAACGCTCTCCACCCCGGCGCATCAACCCCAACCGCC
ACGACGCTCTGCGACAACTGCGGCAGGCGTCAGCCGACTGATTCTATGAC
TCGGTAAACGCTCTGATGTCCAGCTGCCGTGTCGGTTTAGCGGCTTGCGC
TACGAAGAATGCCATCTTCGCCTTGCCGAGAAAATGCCCGGCGTCGCCAA
TGCCACACGACTCTGCGTACTGTTCTAGAGGACCAAAAAGCGAAGACAGT
TCCGCGAACGACGGCGGCGCCTTCTCCCCCCCACCCCCCGCGCTCTCTTC
TGGCTTGTCTTTTTTTGGCCGCGGCGCCAAAGAAATCCCGAGCCGGGCGA
GGCAAGCTTAGGCTGATTCGAGGAGCCAGGCGTCTCCTGCTTCTCGGGTT
GCTTCTGCTTCTGCCTCTGCTTGTTGGCGATGCACGGGTGGCAGATGCGG
TGTATTTTTCTGCTGCCCTCCTCCTCTGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1133577..1134905+

>mRNA_P-fluviatile_contig1.74.1 ID=mRNA_P-fluviatile_contig1.74.1|Name=mRNA_P-fluviatile_contig1.74.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=426bp|location=Sequence derived from alignment at P-fluviatile_contig1:1133577..1134905+ (Porterinema fluviatile SAG_2381)
CAAAACAGGAACGACGGCAACAACGACGAGGAGTTGTCACGAAGCCGTTC
GGACCCGGGAGTTTCGCGCGGCCAGCAGCGATTTGTAGAAGACAGCAAAA
CAGGAACGACGGCAACAACGACGAGGAGTTGTCACGAAGCCGTTCGGACC
CGGGAGTTTCGCGCGGCCAGCAGCGATTTGTAGAAGACAGGCGCGGTGAT
CTGGACAACCTATCATTTGGAGGCTTTTACCGGCTTGACGTGCCGCTGTA
TGACGGCGTAGGCGACTCTGCTCGGCGCGGTGATCTGGACAACCTATCAT
TTGGAGGCTTTTACCGGCTTGACGTGCCGCTGTATGACGGCGTAGGCGAC
TCTGCTCGAAATCCCGAGCCGGGCGAGGCAAGCTTAGGCTGAAAATCCCG
AGCCGGGCGAGGCAAGCTTAGGCTGA
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