mRNA_P-fluviatile_contig1.7.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.7.1
Unique NamemRNA_P-fluviatile_contig1.7.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.7.1 vs. uniprot
Match: A0A6H5JTN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN3_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.200e-22
Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 MITWFTNGWLRRGSKKKAVAADQQQEQHDKENADRPYPTMKKAKKKKPPQM----PGDTGSWMLCKDRDGMMYWWNDATGQWTYQLYSLPQ 261
            M +WFTNGWLR GSKK+      + E +DKEN    YPT KKAKK          P + GSW+LC+DR+G MYWWND TGQWTYQLYS  Q
Sbjct:    1 MTSWFTNGWLRLGSKKRGQQLGSKDE-NDKENEGW-YPTNKKAKKTVKSAFAGAKPSNQGSWLLCQDREGRMYWWNDVTGQWTYQLYSSAQ 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTN3_9PHAE1.200e-2257.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:67863..70527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size292
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.7.1prot_P-fluviatile_contig1.7.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 67863..70527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815262.7120466-CDS-P-fluviatile_contig1:67862..679891622815262.7120466-CDS-P-fluviatile_contig1:67862..67989Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 67863..67989 +
1693561234.8380733-CDS-P-fluviatile_contig1:67862..679891693561234.8380733-CDS-P-fluviatile_contig1:67862..67989Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 67863..67989 +
1622815262.7228014-CDS-P-fluviatile_contig1:68529..686111622815262.7228014-CDS-P-fluviatile_contig1:68529..68611Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 68530..68611 +
1693561235.6281378-CDS-P-fluviatile_contig1:68529..686111693561235.6281378-CDS-P-fluviatile_contig1:68529..68611Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 68530..68611 +
1622815262.7350025-CDS-P-fluviatile_contig1:70445..705271622815262.7350025-CDS-P-fluviatile_contig1:70445..70527Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 70446..70527 +
1693561236.1553013-CDS-P-fluviatile_contig1:70445..705271693561236.1553013-CDS-P-fluviatile_contig1:70445..70527Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 70446..70527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.7.1

>prot_P-fluviatile_contig1.7.1 ID=prot_P-fluviatile_contig1.7.1|Name=mRNA_P-fluviatile_contig1.7.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=97bp
MITWFTNGWLRRGSKKKAVAADQQQEQHDKENADRPYPTMKKAKKKKPPQ
MPGDTGSWMLCKDRDGMMYWWNDATGQWTYQLYSLPQQQQQQQQQGQ
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mRNA from alignment at P-fluviatile_contig1:67863..70527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.7.1 ID=mRNA_P-fluviatile_contig1.7.1|Name=mRNA_P-fluviatile_contig1.7.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2665bp|location=Sequence derived from alignment at P-fluviatile_contig1:67863..70527+ (Porterinema fluviatile SAG_2381)
ATGATTACCTGGTTCACCAACGGCTGGCTGAGGCGAGGGTCGAAGAAGAA
GGCGGTGGCGGCCGACCAGCAGCAAGAGCAGCATGACAAAGAGAACGCGG
ATCGCCCCTACCCAACTATGAAGAAAGGTGTGTTTCGCGAGCGTGATTTG
ATTTCCCCCTCTCTCTCTGCGGCAAGCCCTCGCTTGCGTACACCTGGTAC
GCAAGGGATCGGACGTCGGGTGCACTGAATGATGAGCGAGTAAGACCTGT
CCACAGTGAAGGTTAATTTTACTTGCGCGGCGCGCAGCTGATGCAGCTCA
AGTCTTGATCCCCCTGTCCCTTGGTTCGCCCCAAAAAAGTGTTCGTCGAG
GCGCGCGCAACGACGCGTGCACTCAATTTCCTTCCACCATTACCAAGGGA
GACGGGAGCAGTGCACCCCGCGAACGTCACCGTAAAGCCCAGGCAAGAGA
TCAGCGCTGCTGCTTTGTTGACGTCACGGCAGGGCCGCGTGTGGGCTCGC
GTGGTCGCGGGAGCGGAGATTTGGTCATGGGCGTTTCCTCGCTCTTCCTG
CCCTCTTCCCAACGACACACAGGCACAACAACGCAAACTTTCGGTCTCAT
TCGTCGCTCTCCCTTTTCGAACGCACACCCCTCTCTCTTTCTCTCTGTTG
CCCACACCACACCACAGCCAAGAAGAAGAAGCCCCCGCAGATGCCCGGGG
ACACCGGATCTTGGATGCTCTGCAAGGATCGGGACGGGATGATGTACTGG
TGAGTTCAGGGTTGGACAGAAAACGGAGCGAGAGAAAAATATTAATGGAG
ATGAACAACTAGCAAAATCGTGTGCTCGTTTTTTTGTTCCAGCTTGAAGT
TGGCAATGCTTGGTTTGCTCGCGGTGTCAGGGAGCAACCCCCCCGGTATG
TGCCAGCAGACTTGTGCGTGTGTACAGGCATCGTGCAGTAAGGTTGTGAG
GCGGCTGGCTCCCTGGCCTGCAGAGCCCGCGGGGGGGAGAGCCATTGAGA
GCTTTGCAAATTCACATTTTCGCTGTTCTCTGGTAGCAAGGTACCTCACC
ACAAAAGAGAGGCCGTCATTTTGTTATATTGGATGCCAACAATCTCTCGC
TCGCCACCGACACGGTGCTGAATGCCGCGGCCGGTACGCAACGGATCCAA
GCGAATCAGGCGTCAATGCCTCCTCTCCTCTGTCCCTCACACGGATCCGA
AGTCGCCACGGCGCTGCGGGGAGGGTAGACCTTACAGTACCCCTCCTCGC
TCGCAACGCGAACAAATTCGTTGACGCCCCACGCGACAACGCGCCCTCGC
GCGCGCGCTTTTGCTCCCACCACACGCGCACTCTGTTTTTGAAAAATGAA
GAGACGACACCCTCTCTCTCAAAAGGTATTTTTTCTCCCAGACGGAACAA
AGCTACGTCACACGCCCCCGTCCCCCCGCTTTATTGACCACACGTCCGAC
ACACCAAAAATGTGCACAGCGTGGCCTCTTTCTCAGTTGTTTTCGCCCTC
TCTCCGCGCCTCCAATTATTTTATACCACACTTCCCCAAGCTGGTGCGAG
CCCGCGTAGCGCGTTCCGCGTCCCTTCGTGACATGGAATCGGATATATTT
GGTCCACGAAGGCTGGTCCGTCAAGAAATCCCCGGTGGTATCTTGCTGAT
GGTCTGTTCGTTCATGAAGTTGTGTTGTTTTCTCACGACACACGCCCGCA
AACATGCTTCATGCTTTCCTACCTCTCTCTTGAACGTGCAATTTTATTCA
AAATGCCAACATTTAGAAAGGTGGGGCTCGCTCGTCAAGGCCGGACAAGG
AACAAGGGAACGCGTTTCAAAAGCGCATCTTCGAGAAATCCTACGCGCTC
AACTTGATTCGTGTGTCCCGCACGCGCTTCAAAAAAACGACTCTGGCACG
TTACTTCTTCTCTCGCCATGGTTGATAATCTACGCCGCGCAATGAGAGCG
CAAAAAGATCGATCTTTTCGATGATGTCGACAGCGCCGACGAACGTGATA
GCTGTGCGGCTACTTTGTCCGAATCCTCCCCGAGTGTCGCCAGTCCGACC
CTGCCAGCTTGTCGGTCGTCACGCTAGTTGCATTTGATTCTTGTTCACTT
CTTCTCCTTTCTTCGGGTCGTTTACCTGAATCCTCGACGTGGAAGAGTTG
AGGCCACGTGTTCCTCTTTGCCCCCCCCCCCCAGTGGTTTGTGAGTTTCT
ATTCAAAACTACTTGCTTCATCCACTTGTTTTTTCTTTTTCCCCATCTCA
CGGGGATTGTGGACACGCCTTGCCGTTGCTGTAGAGGGAGGCTTTCCCCT
CAACCCCGAAGCCTCGCCAATCGAAAAGAGCCATCCCCCGGGTATCCACA
CCAGCCGTCGACTTGATATGACAGAGGCGAGATTGAGGTAACGGAGGCGG
GATCCATTCGATGAATGATTTCCCTGCAGAGCACCGATATACGTGAGAGC
GAGCAAAGTTGCGTGAGCCGTCTTCGTTCAGAGCAGAAGACAAACACGAC
TACGTGCTCCAGCCCCCCCCTGGTTTTCACGATATCCTTTGTCGCCCTCT
CTGCCGTTCACCCCTTTCTCGTCCATTTACCAGGTGGAACGACGCCACCG
GGCAGTGGACGTACCAGCTCTACAGCCTCCCCCAGCAGCAGCAGCAGCAA
CAACAACAAGGACAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:67863..70527+

>mRNA_P-fluviatile_contig1.7.1 ID=mRNA_P-fluviatile_contig1.7.1|Name=mRNA_P-fluviatile_contig1.7.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=582bp|location=Sequence derived from alignment at P-fluviatile_contig1:67863..70527+ (Porterinema fluviatile SAG_2381)
ATGATTACCTGGTTCACCAACGGCTGGCTGAGGCGAGGGTCGAAGAAGAA
GGCGGTGGCGGCCGACCAGCAGCAAGAGCAGCATGACAAAGAGAACGCGG
ATCGCCCCTACCCAACTATGAAGAAAGATGATTACCTGGTTCACCAACGG
CTGGCTGAGGCGAGGGTCGAAGAAGAAGGCGGTGGCGGCCGACCAGCAGC
AAGAGCAGCATGACAAAGAGAACGCGGATCGCCCCTACCCAACTATGAAG
AAAGCCAAGAAGAAGAAGCCCCCGCAGATGCCCGGGGACACCGGATCTTG
GATGCTCTGCAAGGATCGGGACGGGATGATGTACTGCCAAGAAGAAGAAG
CCCCCGCAGATGCCCGGGGACACCGGATCTTGGATGCTCTGCAAGGATCG
GGACGGGATGATGTACTGGTGGAACGACGCCACCGGGCAGTGGACGTACC
AGCTCTACAGCCTCCCCCAGCAGCAGCAGCAGCAACAACAACAAGGACAG
GTGGAACGACGCCACCGGGCAGTGGACGTACCAGCTCTACAGCCTCCCCC
AGCAGCAGCAGCAGCAACAACAACAAGGACAG
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