mRNA_P-fluviatile_contig1.64.1 (mRNA) Porterinema fluviatile SAG_2381
|
Overview
Homology
BLAST of mRNA_P-fluviatile_contig1.64.1 vs. uniprot
Match: D7FJI6_ECTSI (MORN repeat variant family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJI6_ECTSI) HSP 1 Score: 558 bits (1439), Expect = 3.140e-175 Identity = 726/1002 (72.46%), Postives = 781/1002 (77.94%), Query Frame = 2
Query: 977 RGGGRPGHLAFPAEAPMFVLPLAWLIAARRFPTYQNAMRSGALVPYDSLNRNSAFVVFVSHRWVNEPKRLAGLRGQAAAGCRGSGGRAGGDEDGVPDVDSTKHSTLVEGLSSILASLPREVAVFVWIDFSCVDQDNEESKRRSARSLAAYIQRSDAVFTPYAESLYAPGAGNGLGAGETRIDANWWGAQSKPEGQAPPRTASDRNSDEVSTNPLGVVCDTQWPNSYRSLDDFCSRAWCRLEVLLCAALPIREDGYRYFAARGKEDRSRDRPHFLFGEYQQRRKLPPEALGRAVDDAWANSLDPLEGVLSNPEDMEAIVHGMGPLRLAFRSAAA------------------PLQPRGNEESRDTGGRVAGEXXXXXXXXXXVQAVPRGAGHG-------------RMGQGLIPPPIDTRMAPGGSDEVELVSAARSAAPDRLMSPAVRGSRIMAA-SPMRVRTAAANSALDGDNAGAHPQQRVDSGMPEWLWETVSQHTLAEGDTRTQYSDGSTYIGPLKGGNVGXXXXGKRHGKGVYFFQDGSRYEGWFKEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQGKKKSGVFTYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDNVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHXANXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVFKEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVDSTAEGSRSIHYRADGTECAIQGDELRNLMRRINEQRMMRPVTPTVNPDSDNGDQQPSAVAAAAGPSPASTSEAKRD 3886
RGGG G AFP EAPMFVLPL L AAR FP YQNAMRSGALVPYDSL+RNSAFVVFVSHRW+NE R + GG+ G+ G PDVDS KH+ LVEGL SILASLPREVAVF+WID+SC+DQ+N ESKR+ ARS+AAY+Q SDAVFTPYAESLY P +G G G E NPLG VC+T WPNSYRSL DFCSRAWCRLEVLLCA LP+R+ G+RYFAARG+E R++DRPHF++GEYQ+RR LPPEAL R+VD+AWA+S+DPLEG LSNPEDMEAIVHGMGP+RLA RSAA+ PL P +EE R GR +GE XXXXXXXXX R G+ LIPP +TR PG SDE ELVSAARS A DRLMSPAV+G RI+++ SPMR RTAAA+SA+ + GA R DS MP WLW+TV Q+ L+EGDTRTQYSDGST++GPLK G RHGKG YFFQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VQGKKKSGVFTY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDN K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX X XXXXXX X XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Y FKEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKA+DSTA+GSRS+HYRADGTEC IQGDELRNLMRRINEQRMM+PVTP VNP+++ DQQ AAA PS AST+E+ D
Sbjct: 103 RGGGGVGPFAFPPEAPMFVLPLTGLSAARSFPKYQNAMRSGALVPYDSLDRNSAFVVFVSHRWINESSRPTEF-------WKHGGGQDFGE--GSPDVDSAKHTFLVEGLHSILASLPREVAVFLWIDYSCIDQENPESKRKGARSVAAYMQLSDAVFTPYAESLY-PSSGGGGG--------------------------------ETFANPLGEVCNTPWPNSYRSLQDFCSRAWCRLEVLLCATLPLRDGGFRYFAARGEEGRAQDRPHFVYGEYQRRRNLPPEALARSVDEAWASSVDPLEGFLSNPEDMEAIVHGMGPVRLASRSAASSALGSSVNTTTAVATVATPLHPGDSEERRRATGRASGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGRELIPPLSETRAMPGLSDEAELVSAARSIATDRLMSPAVKGGRIISSPSPMRKRTAAADSAVGSETRGA----RGDSSMPGWLWDTVFQYPLSEGDTRTQYSDGSTFVGPLK--------DGMRHGKGCYFFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWVQGKKKSGVFTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDNSKHGEGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDDMKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEFKEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKALDSTAQGSRSVHYRADGTECTIQGDELRNLMRRINEQRMMQPVTPIVNPEAEQPDQQ--LTAAAIAPSIASTAESVSD 1048
BLAST of mRNA_P-fluviatile_contig1.64.1 vs. uniprot
Match: D7FSV0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSV0_ECTSI) HSP 1 Score: 114 bits (284), Expect = 7.790e-22 Identity = 103/360 (28.61%), Postives = 148/360 (41.11%), Query Frame = 2
Query: 977 RGGGRPGHLAFPAEAPMFVLPLAWLIAARRFPTYQNAMRSGALVPYDSL-NRNSAFVVFVSHRWVNEPKRLAGLRGQAAAGCRGSGGRAGGDEDGVPDVDST---KHSTLVEGLSSILASLPREVAVFVWIDFSCVDQDNEESKRRSARSLAAYIQRSDAVFTPYAESLYAPGAGNGLGAGETRIDANWWGAQSKPEGQAPPRTASDRNSDEVSTNPLGVVCDTQWPNSYRSLDDFCSRAWCRLEVLLCAALPIREDGYRYF-------AARGKEDRSRDRPHFLFGEYQQRRKLPPEALGRAVDDAWANSLDPLEGVLSNPEDMEAI--VHGMGPLRLAFRSAAAPLQPRGNEESRDTG 2017
R G PG + P+ M ++PL L A RR P + ALV Y L +R+ +FVVFVSH W+ + PD S K+ + E I A LP +V V +WID+SCVDQD+ + + R + Y++R DA+ T Y P A+D N +E N C W SY+SL +C+R WCRLE+LL P+ +DG+ + A G + DRPHFL+G +Q+ + + R W P +G ++ D +AI V +A R+AA G + R G
Sbjct: 482 RRGPTPGSHSLPS---MVLVPLEALKAHRRVPRSSDRR---ALVRYRDLPDRSRSFVVFVSHAWMRPHTTPSFAH---------------------PDTSSRGGEKYRLIAEAGDRIRAHLPPDVRVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILTVY------------------------------------PGDAAD-NGEEFLPNRFVKSC--AWAGSYKSLAHYCTRGWCRLEMLLGQTEPLPQDGFMFNFLVPKKKKASGAKASVGDRPHFLYGAHQRPHNGRIDVVPRQSS-RWFEEHHPEQGNFTHESDRDAIRAVLAKQTNTMAKRNAAIAAARYGTDPRRGGG 774
BLAST of mRNA_P-fluviatile_contig1.64.1 vs. uniprot
Match: A0A7S3UUH9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUH9_HETAK) HSP 1 Score: 79.7 bits (195), Expect = 2.270e-11 Identity = 71/282 (25.18%), Postives = 110/282 (39.01%), Query Frame = 2
Query: 1127 RNSAFVVFVSHRWVNEPKRLAGLRGQAAAGCRGSGGRAGGDEDGVPDVDSTKHSTLVEGLSSILASLPREVAVFVWIDFSCVDQDNEESKRRSARSLAAYIQRSDAVFTPYAESLYAPGAGNGLGAGETRIDANWWGAQSKPEGQAPPRTASDRNSDEVSTNPLGVVCDTQWPNSYRSLDD----FCSRAWCRLEVLLCAALPIREDGYRYFAARGKEDRSRDRPHFLFGEYQQR--RKLPPEALGRAVDDAWANSLDPLEGVLSNPEDM---EAIVHGMGP 1945
RN +VF+SHRW + + + PD + K L+ L I +L + +WID+ +DQD+ +K + +SL YI+ SDA+ TP+ +++Y AGE D P ++ + +R L D + RAWCRLE L + DGY +F RG R PHF+ G++ LPP + L+P EG + + +D+ A+V G P
Sbjct: 116 RNKFCIVFISHRWWSGLEPIP-----------------------HPDKGTIKFHLLIRSLKLIQQALDEGTEMLLWIDYFGIDQDSTHNKIKGIKSLPYYIKNSDALLTPFTDTIYE--------AGEEHEDF-----------------------------PFPLMGTMPFLKRFRCLRDDPNEYFGRAWCRLEYYLGTNAQLPPDGYSFFKRRGLVRAGR--PHFIAGDHGDGVPNILPP------LTSQLLAQLEPTEGAVHDTQDLVHIRALVEGNPP 329 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.64.1 >prot_P-fluviatile_contig1.64.1 ID=prot_P-fluviatile_contig1.64.1|Name=mRNA_P-fluviatile_contig1.64.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1238bp MGCSGSKGRAEGSVIAPTSSAPSVGPLPAASESGSSRKPTMKIFDTHTTEback to top mRNA from alignment at P-fluviatile_contig1:982861..996634- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig1.64.1 ID=mRNA_P-fluviatile_contig1.64.1|Name=mRNA_P-fluviatile_contig1.64.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=13774bp|location=Sequence derived from alignment at P-fluviatile_contig1:982861..996634- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig1:982861..996634- >mRNA_P-fluviatile_contig1.64.1 ID=mRNA_P-fluviatile_contig1.64.1|Name=mRNA_P-fluviatile_contig1.64.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=7428bp|location=Sequence derived from alignment at P-fluviatile_contig1:982861..996634- (Porterinema fluviatile SAG_2381)back to top |