mRNA_P-fluviatile_contig1.602.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.602.1
Unique NamemRNA_P-fluviatile_contig1.602.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6435384..6435897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size514
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.602.1prot_P-fluviatile_contig1.602.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6435463..6435894 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.5272372-UTR-P-fluviatile_contig1:6435383..64354621622815271.5272372-UTR-P-fluviatile_contig1:6435383..6435462Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6435384..6435462 +
1693561323.50227-UTR-P-fluviatile_contig1:6435383..64354621693561323.50227-UTR-P-fluviatile_contig1:6435383..6435462Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6435384..6435462 +
1622815271.5489097-UTR-P-fluviatile_contig1:6435894..64358971622815271.5489097-UTR-P-fluviatile_contig1:6435894..6435897Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6435895..6435897 +
1693561323.5209832-UTR-P-fluviatile_contig1:6435894..64358971693561323.5209832-UTR-P-fluviatile_contig1:6435894..6435897Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6435895..6435897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.5392816-CDS-P-fluviatile_contig1:6435462..64358941622815271.5392816-CDS-P-fluviatile_contig1:6435462..6435894Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6435463..6435894 +
1693561323.5120394-CDS-P-fluviatile_contig1:6435462..64358941693561323.5120394-CDS-P-fluviatile_contig1:6435462..6435894Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6435463..6435894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.602.1

>prot_P-fluviatile_contig1.602.1 ID=prot_P-fluviatile_contig1.602.1|Name=mRNA_P-fluviatile_contig1.602.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=144bp
MKRKHRKQKKQQDDSMDDGAEEQQQQQQQQAQAQAQTATIHDVWSMDGVD
SEDEQQVAVVSEDNTSVPASATERALGGGNLSIPEALSLCGPLSLDHLVV
FTLGDKKDDEKSVEEQTQLLQSMNKEMLERIGVEYKDSFFEIK*
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mRNA from alignment at P-fluviatile_contig1:6435384..6435897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.602.1 ID=mRNA_P-fluviatile_contig1.602.1|Name=mRNA_P-fluviatile_contig1.602.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=514bp|location=Sequence derived from alignment at P-fluviatile_contig1:6435384..6435897+ (Porterinema fluviatile SAG_2381)
GGACGGGGAGGGGGCGGTGGCGGTGGAGCAGCGCAAGAAGCAGAAGAAGC
AGAAGAAGCAGAAGAAGCAGAAGAAGCAGATGAAGCGGAAGCACCGCAAG
CAGAAGAAGCAGCAGGACGACTCCATGGACGACGGCGCGGAGGAGCAGCA
GCAGCAGCAGCAGCAGCAGGCCCAGGCCCAGGCCCAGACGGCCACGATCC
ACGACGTTTGGTCGATGGATGGTGTAGACAGCGAGGACGAGCAACAGGTT
GCCGTAGTGTCAGAGGACAACACCAGTGTGCCGGCGTCCGCGACGGAGAG
GGCATTGGGGGGAGGGAACCTTTCCATCCCGGAAGCACTCTCCCTGTGTG
GCCCTCTGTCACTCGACCACCTGGTGGTCTTTACTCTCGGTGATAAGAAG
GACGACGAGAAGTCGGTTGAAGAGCAGACGCAGTTGCTGCAGAGCATGAA
CAAGGAGATGTTGGAGCGCATCGGTGTTGAGTACAAGGATTCGTTCTTTG
AGATAAAGTAGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6435384..6435897+

>mRNA_P-fluviatile_contig1.602.1 ID=mRNA_P-fluviatile_contig1.602.1|Name=mRNA_P-fluviatile_contig1.602.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=864bp|location=Sequence derived from alignment at P-fluviatile_contig1:6435384..6435897+ (Porterinema fluviatile SAG_2381)
ATGAAGCGGAAGCACCGCAAGCAGAAGAAGCAGCAGGACGACTCCATGGA
CGACGGCGCGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGGCCCAGGCCC
AGGCCCAGACGGCCACGATCCACGACGTTTGGTCGATGGATGGTGTAGAC
AGCGAGGACGAGCAACAGGTTGCCGTAGTGTCAGAGGACAACACCAGTGT
GCCGGCGTCCGCGACGGAGAGGGCATTGGGGGGAGGGAACCTTTCCATCC
CGGAAGCACTCTCCCTGTGTGGCCCTCTGTCACTCGACCACCTGGTGGTC
TTTACTCTCGGTGATAAGAAGGACGACGAGAAGTCGGTTGAAGAGCAGAC
GCAGTTGCTGCAGAGCATGAACAAGGAGATGTTGGAGCGCATCGGTGTTG
AGTACAAGGATTCGTTCTTTGAGATAAAGTAGATGAAGCGGAAGCACCGC
AAGCAGAAGAAGCAGCAGGACGACTCCATGGACGACGGCGCGGAGGAGCA
GCAGCAGCAGCAGCAGCAGCAGGCCCAGGCCCAGGCCCAGACGGCCACGA
TCCACGACGTTTGGTCGATGGATGGTGTAGACAGCGAGGACGAGCAACAG
GTTGCCGTAGTGTCAGAGGACAACACCAGTGTGCCGGCGTCCGCGACGGA
GAGGGCATTGGGGGGAGGGAACCTTTCCATCCCGGAAGCACTCTCCCTGT
GTGGCCCTCTGTCACTCGACCACCTGGTGGTCTTTACTCTCGGTGATAAG
AAGGACGACGAGAAGTCGGTTGAAGAGCAGACGCAGTTGCTGCAGAGCAT
GAACAAGGAGATGTTGGAGCGCATCGGTGTTGAGTACAAGGATTCGTTCT
TTGAGATAAAGTAG
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