mRNA_P-fluviatile_contig1.601.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.601.1
Unique NamemRNA_P-fluviatile_contig1.601.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6434725..6435306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size583
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.4837239-CDS-P-fluviatile_contig1:6434724..64353061622815271.4837239-CDS-P-fluviatile_contig1:6434724..6435306Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6434725..6435306 +
1693561323.492414-CDS-P-fluviatile_contig1:6434724..64353061693561323.492414-CDS-P-fluviatile_contig1:6434724..6435306Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6434725..6435306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.601.1prot_P-fluviatile_contig1.601.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6434725..6435306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.601.1

>prot_P-fluviatile_contig1.601.1 ID=prot_P-fluviatile_contig1.601.1|Name=mRNA_P-fluviatile_contig1.601.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=194bp
KSLQPGVVQFEAVGTSIWDYSSLVTWMHAHTINPKMITYATNVAGRGVCL
KSQDHDWPITDLILDAPVLNGSSMNQVGGRATGNDTGVIKNVWASEDMHD
IFEAHLRANNVIIGKLAVEDSSLSSLETLGQDVDNADEGAAVQDKSGTFE
ALSGKRHTRPSAARAHNMAHTRVSRAMKRKKITLLSDAALPEEE
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mRNA from alignment at P-fluviatile_contig1:6434725..6435306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.601.1 ID=mRNA_P-fluviatile_contig1.601.1|Name=mRNA_P-fluviatile_contig1.601.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=582bp|location=Sequence derived from alignment at P-fluviatile_contig1:6434725..6435306+ (Porterinema fluviatile SAG_2381)
AAGTCTCTGCAGCCGGGCGTGGTTCAGTTCGAGGCCGTCGGCACGTCCAT
CTGGGACTACAGCAGCCTCGTCACATGGATGCATGCGCACACGATCAATC
CCAAGATGATCACCTACGCGACCAACGTCGCCGGCCGAGGAGTCTGTCTC
AAAAGCCAGGATCACGACTGGCCCATCACCGATCTCATACTCGACGCCCC
CGTCTTGAACGGCTCATCCATGAATCAGGTCGGTGGGCGCGCGACCGGCA
ACGACACGGGCGTCATCAAGAACGTCTGGGCGAGTGAGGACATGCACGAC
ATATTCGAAGCACACCTCCGGGCCAACAACGTCATCATCGGCAAGCTCGC
GGTGGAGGACAGTTCTCTAAGCAGCCTGGAGACCCTCGGACAAGACGTGG
ACAACGCCGACGAAGGCGCAGCTGTCCAGGACAAGTCCGGGACGTTCGAG
GCCTTGTCCGGGAAGAGGCACACTCGGCCCAGTGCGGCAAGGGCGCACAA
CATGGCGCACACCCGCGTCTCGAGGGCCATGAAGCGCAAGAAGATCACCC
TCTTGTCCGATGCCGCCCTGCCCGAAGAAGAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6434725..6435306+

>mRNA_P-fluviatile_contig1.601.1 ID=mRNA_P-fluviatile_contig1.601.1|Name=mRNA_P-fluviatile_contig1.601.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1164bp|location=Sequence derived from alignment at P-fluviatile_contig1:6434725..6435306+ (Porterinema fluviatile SAG_2381)
AAGTCTCTGCAGCCGGGCGTGGTTCAGTTCGAGGCCGTCGGCACGTCCAT
CTGGGACTACAGCAGCCTCGTCACATGGATGCATGCGCACACGATCAATC
CCAAGATGATCACCTACGCGACCAACGTCGCCGGCCGAGGAGTCTGTCTC
AAAAGCCAGGATCACGACTGGCCCATCACCGATCTCATACTCGACGCCCC
CGTCTTGAACGGCTCATCCATGAATCAGGTCGGTGGGCGCGCGACCGGCA
ACGACACGGGCGTCATCAAGAACGTCTGGGCGAGTGAGGACATGCACGAC
ATATTCGAAGCACACCTCCGGGCCAACAACGTCATCATCGGCAAGCTCGC
GGTGGAGGACAGTTCTCTAAGCAGCCTGGAGACCCTCGGACAAGACGTGG
ACAACGCCGACGAAGGCGCAGCTGTCCAGGACAAGTCCGGGACGTTCGAG
GCCTTGTCCGGGAAGAGGCACACTCGGCCCAGTGCGGCAAGGGCGCACAA
CATGGCGCACACCCGCGTCTCGAGGGCCATGAAGCGCAAGAAGATCACCC
TCTTGTCCGATGCCGCCCTGCCCGAAGAAGAAAAGTCTCTGCAGCCGGGC
GTGGTTCAGTTCGAGGCCGTCGGCACGTCCATCTGGGACTACAGCAGCCT
CGTCACATGGATGCATGCGCACACGATCAATCCCAAGATGATCACCTACG
CGACCAACGTCGCCGGCCGAGGAGTCTGTCTCAAAAGCCAGGATCACGAC
TGGCCCATCACCGATCTCATACTCGACGCCCCCGTCTTGAACGGCTCATC
CATGAATCAGGTCGGTGGGCGCGCGACCGGCAACGACACGGGCGTCATCA
AGAACGTCTGGGCGAGTGAGGACATGCACGACATATTCGAAGCACACCTC
CGGGCCAACAACGTCATCATCGGCAAGCTCGCGGTGGAGGACAGTTCTCT
AAGCAGCCTGGAGACCCTCGGACAAGACGTGGACAACGCCGACGAAGGCG
CAGCTGTCCAGGACAAGTCCGGGACGTTCGAGGCCTTGTCCGGGAAGAGG
CACACTCGGCCCAGTGCGGCAAGGGCGCACAACATGGCGCACACCCGCGT
CTCGAGGGCCATGAAGCGCAAGAAGATCACCCTCTTGTCCGATGCCGCCC
TGCCCGAAGAAGAA
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