mRNA_P-fluviatile_contig1.600.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.600.1
Unique NamemRNA_P-fluviatile_contig1.600.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6433756..6434532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-24
Ec32 orthologEc-06_006510.1
Exons1
Model size777
Cds size777
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.814073-CDS-P-fluviatile_contig1:6433755..64345321622815356.814073-CDS-P-fluviatile_contig1:6433755..6434532Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6433756..6434532 +
1693561583.7663608-CDS-P-fluviatile_contig1:6433755..64345321693561583.7663608-CDS-P-fluviatile_contig1:6433755..6434532Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6433756..6434532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.600.1prot_P-fluviatile_contig1.600.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6433756..6434532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.600.1

>prot_P-fluviatile_contig1.600.1 ID=prot_P-fluviatile_contig1.600.1|Name=mRNA_P-fluviatile_contig1.600.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=259bp
MTNSCLNLIGDTQVGKSIETIIELVKGWLQQKLVPVLVTLNSSIHLNEFV
GRFAFSDKFFLKVWQLAGFDIYHAPSTRLFFGSTPREIGEYKKCLQDLVA
GHNKVIPVWCLLNNAPRVIFFREKIVPIILEVAGLTDEQAISMHIAIDEA
DEWVKTGDMSAATEEEWSKETAGYPDLYKATSTFTLITATPAALYMNNSR
VGDKTRRVTEIARSKHYWGWSQSGTSKHKVITRRVGGMDEMMDDWRQSAD
SRFALVVRS
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mRNA from alignment at P-fluviatile_contig1:6433756..6434532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.600.1 ID=mRNA_P-fluviatile_contig1.600.1|Name=mRNA_P-fluviatile_contig1.600.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=777bp|location=Sequence derived from alignment at P-fluviatile_contig1:6433756..6434532+ (Porterinema fluviatile SAG_2381)
ATGACGAACTCCTGCCTCAACCTGATCGGGGATACACAGGTCGGAAAGTC
TATCGAGACCATCATCGAGCTTGTGAAGGGGTGGCTGCAGCAGAAACTCG
TGCCGGTCTTGGTCACCCTGAACAGCTCCATTCACCTCAACGAGTTCGTC
GGTCGGTTCGCATTTTCCGACAAGTTCTTCCTCAAGGTGTGGCAGCTCGC
CGGCTTCGACATCTACCACGCGCCGTCGACCCGGCTCTTCTTTGGAAGCA
CGCCTAGAGAGATCGGCGAGTACAAGAAGTGCCTCCAGGACTTGGTAGCG
GGCCACAACAAAGTCATTCCTGTGTGGTGCCTGCTCAACAATGCCCCCCG
GGTGATATTCTTCCGGGAGAAAATCGTGCCGATCATCCTCGAGGTCGCCG
GACTGACGGACGAACAGGCGATCTCCATGCACATCGCGATTGACGAGGCC
GACGAGTGGGTCAAGACGGGAGACATGAGCGCGGCCACGGAAGAAGAGTG
GAGCAAAGAAACCGCGGGATACCCCGACCTGTACAAGGCGACGTCGACCT
TCACCCTCATCACGGCGACACCTGCCGCGCTGTACATGAACAACAGCCGC
GTTGGCGACAAGACACGCCGCGTCACCGAAATAGCCCGGTCGAAGCACTA
CTGGGGGTGGAGCCAGTCTGGCACGTCGAAACACAAGGTCATCACTCGCC
GAGTCGGCGGCATGGACGAAATGATGGACGATTGGCGCCAGTCGGCAGAC
AGTCGGTTTGCGCTGGTTGTGCGGAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6433756..6434532+

>mRNA_P-fluviatile_contig1.600.1 ID=mRNA_P-fluviatile_contig1.600.1|Name=mRNA_P-fluviatile_contig1.600.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1554bp|location=Sequence derived from alignment at P-fluviatile_contig1:6433756..6434532+ (Porterinema fluviatile SAG_2381)
ATGACGAACTCCTGCCTCAACCTGATCGGGGATACACAGGTCGGAAAGTC
TATCGAGACCATCATCGAGCTTGTGAAGGGGTGGCTGCAGCAGAAACTCG
TGCCGGTCTTGGTCACCCTGAACAGCTCCATTCACCTCAACGAGTTCGTC
GGTCGGTTCGCATTTTCCGACAAGTTCTTCCTCAAGGTGTGGCAGCTCGC
CGGCTTCGACATCTACCACGCGCCGTCGACCCGGCTCTTCTTTGGAAGCA
CGCCTAGAGAGATCGGCGAGTACAAGAAGTGCCTCCAGGACTTGGTAGCG
GGCCACAACAAAGTCATTCCTGTGTGGTGCCTGCTCAACAATGCCCCCCG
GGTGATATTCTTCCGGGAGAAAATCGTGCCGATCATCCTCGAGGTCGCCG
GACTGACGGACGAACAGGCGATCTCCATGCACATCGCGATTGACGAGGCC
GACGAGTGGGTCAAGACGGGAGACATGAGCGCGGCCACGGAAGAAGAGTG
GAGCAAAGAAACCGCGGGATACCCCGACCTGTACAAGGCGACGTCGACCT
TCACCCTCATCACGGCGACACCTGCCGCGCTGTACATGAACAACAGCCGC
GTTGGCGACAAGACACGCCGCGTCACCGAAATAGCCCGGTCGAAGCACTA
CTGGGGGTGGAGCCAGTCTGGCACGTCGAAACACAAGGTCATCACTCGCC
GAGTCGGCGGCATGGACGAAATGATGGACGATTGGCGCCAGTCGGCAGAC
AGTCGGTTTGCGCTGGTTGTGCGGAGCATGACGAACTCCTGCCTCAACCT
GATCGGGGATACACAGGTCGGAAAGTCTATCGAGACCATCATCGAGCTTG
TGAAGGGGTGGCTGCAGCAGAAACTCGTGCCGGTCTTGGTCACCCTGAAC
AGCTCCATTCACCTCAACGAGTTCGTCGGTCGGTTCGCATTTTCCGACAA
GTTCTTCCTCAAGGTGTGGCAGCTCGCCGGCTTCGACATCTACCACGCGC
CGTCGACCCGGCTCTTCTTTGGAAGCACGCCTAGAGAGATCGGCGAGTAC
AAGAAGTGCCTCCAGGACTTGGTAGCGGGCCACAACAAAGTCATTCCTGT
GTGGTGCCTGCTCAACAATGCCCCCCGGGTGATATTCTTCCGGGAGAAAA
TCGTGCCGATCATCCTCGAGGTCGCCGGACTGACGGACGAACAGGCGATC
TCCATGCACATCGCGATTGACGAGGCCGACGAGTGGGTCAAGACGGGAGA
CATGAGCGCGGCCACGGAAGAAGAGTGGAGCAAAGAAACCGCGGGATACC
CCGACCTGTACAAGGCGACGTCGACCTTCACCCTCATCACGGCGACACCT
GCCGCGCTGTACATGAACAACAGCCGCGTTGGCGACAAGACACGCCGCGT
CACCGAAATAGCCCGGTCGAAGCACTACTGGGGGTGGAGCCAGTCTGGCA
CGTCGAAACACAAGGTCATCACTCGCCGAGTCGGCGGCATGGACGAAATG
ATGGACGATTGGCGCCAGTCGGCAGACAGTCGGTTTGCGCTGGTTGTGCG
GAGC
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