mRNA_P-fluviatile_contig1.599.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.599.1
Unique NamemRNA_P-fluviatile_contig1.599.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.599.1 vs. uniprot
Match: A0A6H5JC47_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC47_9PHAE)

HSP 1 Score: 580 bits (1494), Expect = 3.300e-202
Identity = 318/453 (70.20%), Postives = 348/453 (76.82%), Query Frame = 2 
Query:    2 SHVGCNKYPSYGFEADGKKRRCAAHAAEGMTSLLKKCEGCGKTASYGFPGLARTRCGQHKKNGMTGPSRRAAERPVLPQPRGPATAVDVAAAAFVAAGVTATESSTSPGEGSAVASDVEPAIGAEQGVTRIGLLALVAEAAGVRGCELGTRQGADTSPEPNPGKTAGGRGSENGCRDGHEAEIKAATQ------KLERRLARVQADR-------------------------------ERLRDQLKKASPPSRDHLRRSTQQQQPAQRPAITGHDVMEKDLFSHDALKDIDSLIHGKGLGTKVAYAEGDTLLTAFLPDVDVPAGYEKKGGGYTCVGHIMHTDGLGALVIDPSKTTRGTVPACRAFMEIGLLRLLNHSFTPNAKLVIGGGGERMKPWWYERAGGVEYGWWYECSIVACADIAVGAEVTIGYADPPKEAKRPRPPKRASKRSRRR 1249
            SH GCNKYPSYGF+ADGKKR CA H AEGMT+LLKKCE C KTASYGFPGLART CGQHKKNGM GPS+  AERPV+PQPR PATAVDVAAAAFVAAGVTA ESS SPG GSA ASDVEPA GAEQG++R+ +L   AEAA V+G E      +  S +      A  +  E   +   E E +AA +      +L R+LA ++A R                               ++LRDQLKKASPP+RDHLRRSTQQQ P QRPA+T HDVMEKDLFSHDALK+I+SLIH KGLGTKVA+AEGDTLLT  LPDVDVPAGYEKKGGGYTC+G+IMH DGLGALVIDPSKT RGT+PACRAFMEI LLRLLNHSF PNAKLVI GGG RMKPWWYERAGGVEYGWWYECSIVACADI VGAEVTI YADPPK AKRP+PPKRASKRSRRR
Sbjct:   61 SHTGCNKYPSYGFKADGKKRCCADHVAEGMTNLLKKCEECRKTASYGFPGLARTHCGQHKKNGMAGPSKGTAERPVVPQPRAPATAVDVAAAAFVAAGVTAMESSASPGAGSAAASDVEPATGAEQGISRLSVLVSAAEAASVQGREF-----SHFSQDAERVAQAEKKRKEESEKLVREREREAADKAKEENDELRRKLATLEAKRREQQAEIXXXXXXXXXXXXXXXXXXXXXXXXDKLRDQLKKASPPARDHLRRSTQQQPPVQRPALTVHDVMEKDLFSHDALKEINSLIHCKGLGTKVAFAEGDTLLTVVLPDVDVPAGYEKKGGGYTCMGYIMHADGLGALVIDPSKTMRGTIPACRAFMEISLLRLLNHSFAPNAKLVIHGGGGRMKPWWYERAGGVEYGWWYECSIVACADIEVGAEVTIEYADPPKGAKRPQPPKRASKRSRRR 508
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BLAST of mRNA_P-fluviatile_contig1.599.1 vs. uniprot
Match: A0A6H5JFA9_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA9_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 5.090e-27
Identity = 73/168 (43.45%), Postives = 91/168 (54.17%), Query Frame = 2 
Query:  695 PAITGHDVMEKDLFSHDALKDIDSLIHGKGLGTKVAYAEGDTLLTAFLPDVDVPAGYEKKGGGYTCVGHIMHTDGLGALVIDPSKTTRGTVPACRAFMEIGLLRLLNHSFTPNAKLVIGGGGERMKPWWYERAGGVEYGWWYECSIVACADIAVGAEVTIGYADPPKE 1198
            P IT  D      ++H+ +    S I G GL +K A   G  +  A LPD  V + +      Y+C  HIMH DG  AL IDP +  RG V AC A  +I LLRLLNHS +PN +L +G   +   P W+E  GG EYG WY CSI A  +I  G E+TI YA  P E
Sbjct:  747 PPITAADARGYYAWAHEKVVCKKSDIAGNGLFSKGAVDRGQDVFAALLPDEPVESAFANAD--YSCYSHIMHADGQSALAIDPGRNMRGNVFACEADNDIRLLRLLNHSKSPNVELSVG---DAATPDWFEAIGGAEYGPWYTCSIKALENIEKGVELTIKYAGAPAE 909
[Close]
BLAST of mRNA_P-fluviatile_contig1.599.1 vs. uniprot
Match: A0A6H5JBG8_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBG8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.480e-14
Identity = 56/154 (36.36%), Postives = 76/154 (49.35%), Query Frame = 2 
Query:  731 LFSHDALKDIDSLIHGKGLGTKVAYAEGDTLLTAFLPDVDVPAGYEKKGGGYTCVGHIMHTDGLGALVIDPSKTTRGTVPACRAFMEIGLLRLLNHSFTPNAKLVIGGGGERMKPWWYE--RAG-GVEYGWWYECSIVACADIAVGAEVTIGYA 1183
            L  H  +++  S I G G   K   ++G T+ T+ LP  +    +  +   Y C  H+MH D  G + IDP    RG +  C   M   ++RLLNHS +PNA+L  GG      P WYE  RAG       WY CS+V    +  G E+TI YA
Sbjct:  121 LKEHFEVEEKPSQIEGHGAFLKRGASKGTTVHTSVLPSSEFSDDFTIEQ--YDCCYHVMHGDKNGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGA---APPDWYEPTRAGQAAVITSWYTCSLVTRRRVEAGEELTICYA 269
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JC47_9PHAE3.300e-20270.20SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JFA9_9PHAE5.090e-2743.45SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JBG8_9PHAE3.480e-1436.36SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6423767..6425578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1491
Cds size1164
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.599.1prot_P-fluviatile_contig1.599.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6423855..6425339 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.7422616-UTR-P-fluviatile_contig1:6423766..64238541622815356.7422616-UTR-P-fluviatile_contig1:6423766..6423854Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6423767..6423854 +
1693561583.4996521-UTR-P-fluviatile_contig1:6423766..64238541693561583.4996521-UTR-P-fluviatile_contig1:6423766..6423854Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6423767..6423854 +
1622815356.7776585-UTR-P-fluviatile_contig1:6425339..64255781622815356.7776585-UTR-P-fluviatile_contig1:6425339..6425578Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6425340..6425578 +
1693561583.758216-UTR-P-fluviatile_contig1:6425339..64255781693561583.758216-UTR-P-fluviatile_contig1:6425339..6425578Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6425340..6425578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.7512586-CDS-P-fluviatile_contig1:6423854..64243071622815356.7512586-CDS-P-fluviatile_contig1:6423854..6424307Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6423855..6424307 +
1693561583.729051-CDS-P-fluviatile_contig1:6423854..64243071693561583.729051-CDS-P-fluviatile_contig1:6423854..6424307Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6423855..6424307 +
1622815356.759999-CDS-P-fluviatile_contig1:6424517..64246821622815356.759999-CDS-P-fluviatile_contig1:6424517..6424682Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6424518..6424682 +
1693561583.73793-CDS-P-fluviatile_contig1:6424517..64246821693561583.73793-CDS-P-fluviatile_contig1:6424517..6424682Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6424518..6424682 +
1622815356.7689319-CDS-P-fluviatile_contig1:6424793..64253391622815356.7689319-CDS-P-fluviatile_contig1:6424793..6425339Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6424794..6425339 +
1693561583.7492425-CDS-P-fluviatile_contig1:6424793..64253391693561583.7492425-CDS-P-fluviatile_contig1:6424793..6425339Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6424794..6425339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.599.1

>prot_P-fluviatile_contig1.599.1 ID=prot_P-fluviatile_contig1.599.1|Name=mRNA_P-fluviatile_contig1.599.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=388bp
MTSLLKKCEGCGKTASYGFPGLARTRCGQHKKNGMTGPSRRAAERPVLPQ
PRGPATAVDVAAAAFVAAGVTATESSTSPGEGSAVASDVEPAIGAEQGVT
RIGLLALVAEAAGVRGCELGTRQGADTSPEPNPGKTAGGRGSENGCRDGH
EAEIKAATQKLERRLARVQADRERLRDQLKKASPPSRDHLRRSTQQQQPA
QRPAITGHDVMEKDLFSHDALKDIDSLIHGKGLGTKVAYAEGDTLLTAFL
PDVDVPAGYEKKGGGYTCVGHIMHTDGLGALVIDPSKTTRGTVPACRAFM
EIGLLRLLNHSFTPNAKLVIGGGGERMKPWWYERAGGVEYGWWYECSIVA
CADIAVGAEVTIGYADPPKEAKRPRPPKRASKRSRRR*
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mRNA from alignment at P-fluviatile_contig1:6423767..6425578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.599.1 ID=mRNA_P-fluviatile_contig1.599.1|Name=mRNA_P-fluviatile_contig1.599.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1812bp|location=Sequence derived from alignment at P-fluviatile_contig1:6423767..6425578+ (Porterinema fluviatile SAG_2381)
TAGCCACGTGGGTTGTAACAAGTACCCGTCGTATGGCTTCGAGGCGGATG
GCAAGAAGCGGCGCTGTGCTGCACACGCCGCAGAGGGGATGACTAGTTTG
CTCAAAAAGTGCGAAGGGTGTGGTAAGACAGCCAGCTATGGCTTTCCTGG
CCTCGCTCGAACTCGCTGTGGCCAGCACAAGAAGAACGGAATGACTGGTC
CATCTAGACGTGCAGCAGAGCGACCAGTCCTCCCTCAGCCACGAGGACCT
GCAACAGCAGTAGACGTCGCAGCAGCAGCATTCGTTGCAGCGGGGGTGAC
CGCGACGGAGTCCAGTACATCGCCCGGTGAAGGATCGGCGGTGGCGAGTG
ATGTTGAGCCAGCGATCGGAGCGGAGCAAGGTGTCACAAGGATAGGTCTT
CTCGCACTGGTAGCGGAAGCAGCAGGCGTTCGGGGATGCGAGCTGGGGAC
TAGACAAGGTGCTGACACATCTCCAGAGCCAAATCCCGGAAAGACAGCTG
GTGGGCGCGGGAGCGAGAACGGGTGTCGCGATGGACACGAGGTAGGAGGA
TTGGAAAACCAACAATCTCGCAACAAAAGTTGATGTCGCCAAAACGGACA
CGTGGTAAACAGAGCACCCCAATACACGAGAAAATCCACATGTTCCCGCT
TCGTATGCATGTACAGCAGTGGTTTTTGTAGGGCGCTGTTGCTACGGATC
TTCGTTCTGTTGGAAATTCTGCCGATTCCCGCGGCTACCCTTCTATAGCA
GGCGGAAATCAAGGCAGCAACACAAAAGTTAGAGCGGCGATTGGCGAGAG
TACAGGCTGACAGGGAGAGACTACGAGACCAACTGAAGAAGGCCAGCCCA
CCCTCACGTGACCATCTTCGGCGCAGCACACAACAGCAGCAGCCGGCACA
GCGGCCCGCTATAACGGTGAGCGGCGCATATAGTCGGTGCTTCACAAGTT
GTTGCAGAAAAGCAGTGGCCTCATACCGTGCGCGTCATCCCAACAAATGC
CGCTGATTTCTCTCGCAAATCAATCAGGGACACGACGTGATGGAAAAAGA
TCTGTTTTCGCACGACGCGCTCAAGGACATCGACAGCCTAATCCATGGCA
AGGGTCTCGGCACCAAGGTCGCTTATGCCGAAGGCGATACTCTCTTGACG
GCATTTCTCCCGGATGTAGACGTACCTGCGGGGTACGAAAAAAAAGGTGG
TGGCTATACGTGCGTGGGTCACATCATGCACACGGATGGTCTAGGAGCGC
TCGTGATCGACCCGAGCAAAACCACGCGCGGTACGGTCCCCGCGTGTCGA
GCGTTCATGGAAATCGGCTTGCTGCGACTACTCAACCACTCGTTCACGCC
GAATGCTAAATTAGTGATTGGAGGGGGCGGAGAACGAATGAAGCCATGGT
GGTACGAGAGGGCGGGAGGTGTGGAGTATGGATGGTGGTATGAGTGCTCT
ATCGTAGCGTGTGCAGACATCGCGGTAGGCGCCGAGGTGACCATCGGATA
CGCTGACCCTCCCAAGGAGGCAAAGCGACCACGGCCGCCGAAAAGAGCAA
GTAAGCGATCGAGACGCCGGTGATGTAGACACATTCCCGCTTGCGTCAAA
GTGCGTCAATCGAGGCTTGCGTCACCTGGTGTCTGGCACCGAGCACGACG
CCCGAGCAGCCTTGCAGACGTGGCACTGTGCCAACAGCTCTCTCGATTGC
GCGCGTAATGATCGTGCGACACGTTTGGTGGCGGGAAGGGTCATCGTTCG
TGATTTTTCTGTATTCCTTACATTATGTGCCGTACTCAACTAATGCAAGC
TCAACTATCTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6423767..6425578+

>mRNA_P-fluviatile_contig1.599.1 ID=mRNA_P-fluviatile_contig1.599.1|Name=mRNA_P-fluviatile_contig1.599.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2328bp|location=Sequence derived from alignment at P-fluviatile_contig1:6423767..6425578+ (Porterinema fluviatile SAG_2381)
ATGACTAGTTTGCTCAAAAAGTGCGAAGGGTGTGGTAAGACAGCCAGCTA
TGGCTTTCCTGGCCTCGCTCGAACTCGCTGTGGCCAGCACAAGAAGAACG
GAATGACTGGTCCATCTAGACGTGCAGCAGAGCGACCAGTCCTCCCTCAG
CCACGAGGACCTGCAACAGCAGTAGACGTCGCAGCAGCAGCATTCGTTGC
AGCGGGGGTGACCGCGACGGAGTCCAGTACATCGCCCGGTGAAGGATCGG
CGGTGGCGAGTGATGTTGAGCCAGCGATCGGAGCGGAGCAAGGTGTCACA
AGGATAGGTCTTCTCGCACTGGTAGCGGAAGCAGCAGGCGTTCGGGGATG
CGAGCTGGGGACTAGACAAGGTGCTGACACATCTCCAGAGCCAAATCCCG
GAAAGACAGCTGGTGGGCGCGGGAGCGAGAACGGGTGTCGCGATGGACAC
GAGATGACTAGTTTGCTCAAAAAGTGCGAAGGGTGTGGTAAGACAGCCAG
CTATGGCTTTCCTGGCCTCGCTCGAACTCGCTGTGGCCAGCACAAGAAGA
ACGGAATGACTGGTCCATCTAGACGTGCAGCAGAGCGACCAGTCCTCCCT
CAGCCACGAGGACCTGCAACAGCAGTAGACGTCGCAGCAGCAGCATTCGT
TGCAGCGGGGGTGACCGCGACGGAGTCCAGTACATCGCCCGGTGAAGGAT
CGGCGGTGGCGAGTGATGTTGAGCCAGCGATCGGAGCGGAGCAAGGTGTC
ACAAGGATAGGTCTTCTCGCACTGGTAGCGGAAGCAGCAGGCGTTCGGGG
ATGCGAGCTGGGGACTAGACAAGGTGCTGACACATCTCCAGAGCCAAATC
CCGGAAAGACAGCTGGTGGGCGCGGGAGCGAGAACGGGTGTCGCGATGGA
CACGAGGCGGAAATCAAGGCAGCAACACAAAAGTTAGAGCGGCGATTGGC
GAGAGTACAGGCTGACAGGGAGAGACTACGAGACCAACTGAAGAAGGCCA
GCCCACCCTCACGTGACCATCTTCGGCGCAGCACACAACAGCAGCAGCCG
GCACAGCGGCCCGCTATAACGGCGGAAATCAAGGCAGCAACACAAAAGTT
AGAGCGGCGATTGGCGAGAGTACAGGCTGACAGGGAGAGACTACGAGACC
AACTGAAGAAGGCCAGCCCACCCTCACGTGACCATCTTCGGCGCAGCACA
CAACAGCAGCAGCCGGCACAGCGGCCCGCTATAACGGGACACGACGTGAT
GGAAAAAGATCTGTTTTCGCACGACGCGCTCAAGGACATCGACAGCCTAA
TCCATGGCAAGGGTCTCGGCACCAAGGTCGCTTATGCCGAAGGCGATACT
CTCTTGACGGCATTTCTCCCGGATGTAGACGTACCTGCGGGGTACGAAAA
AAAAGGTGGTGGCTATACGTGCGTGGGTCACATCATGCACACGGATGGTC
TAGGAGCGCTCGTGATCGACCCGAGCAAAACCACGCGCGGTACGGTCCCC
GCGTGTCGAGCGTTCATGGAAATCGGCTTGCTGCGACTACTCAACCACTC
GTTCACGCCGAATGCTAAATTAGTGATTGGAGGGGGCGGAGAACGAATGA
AGCCATGGTGGTACGAGAGGGCGGGAGGTGTGGAGTATGGATGGTGGTAT
GAGTGCTCTATCGTAGCGTGTGCAGACATCGCGGTAGGCGCCGAGGTGAC
CATCGGATACGCTGACCCTCCCAAGGAGGCAAAGCGACCACGGCCGCCGA
AAAGAGCAAGTAAGCGATCGAGACGCCGGTGAGGACACGACGTGATGGAA
AAAGATCTGTTTTCGCACGACGCGCTCAAGGACATCGACAGCCTAATCCA
TGGCAAGGGTCTCGGCACCAAGGTCGCTTATGCCGAAGGCGATACTCTCT
TGACGGCATTTCTCCCGGATGTAGACGTACCTGCGGGGTACGAAAAAAAA
GGTGGTGGCTATACGTGCGTGGGTCACATCATGCACACGGATGGTCTAGG
AGCGCTCGTGATCGACCCGAGCAAAACCACGCGCGGTACGGTCCCCGCGT
GTCGAGCGTTCATGGAAATCGGCTTGCTGCGACTACTCAACCACTCGTTC
ACGCCGAATGCTAAATTAGTGATTGGAGGGGGCGGAGAACGAATGAAGCC
ATGGTGGTACGAGAGGGCGGGAGGTGTGGAGTATGGATGGTGGTATGAGT
GCTCTATCGTAGCGTGTGCAGACATCGCGGTAGGCGCCGAGGTGACCATC
GGATACGCTGACCCTCCCAAGGAGGCAAAGCGACCACGGCCGCCGAAAAG
AGCAAGTAAGCGATCGAGACGCCGGTGA
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