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Homology
BLAST of mRNA_P-fluviatile_contig1.594.1 vs. uniprot
Match: A0A6H5JFA9_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA9_9PHAE) HSP 1 Score: 1028 bits (2658), Expect = 0.000e+0 Identity = 556/557 (99.82%), Postives = 556/557 (99.82%), Query Frame = 2
Query: 263 EDAASIRLGTVPVAEAGSDGGAEPAGSSVPVSAAVEYGAADVSHERDEDDTVVDIAWDGPDATLVGAIDTVSGGGGADCTLLLSGSTQAPVAAGEKVVELAAVLDAGQEMGPEQPVPASEALVGGDEAMQVASEANAGEVIAQEPVEGQRAQNGGGGSRRGLVERQLRRSTRKAGSTLDHIAERVGGDGCRAESVDCGGGGAATGKRKGSEEQERQGGDHRSVLGRAEKKSTAKKKPVSQRKPREARLAQGFSNKEKGKTKRDEDTVRRKENIRLEDKERERATQAKLRLQLEIGRKRVAXXXXXXXKVTRLQHKEALGRQHAEEESERQRQSAEELRIRLAAQLEENKMIKRKLVKERKRKEACRKLVDQLGDIHQRPRRKCSHPPDVAKIPPITAADARGYYAWAHEKVVCKKSDIAGNGLFSKGAVDRGQDVFAALLPDEPVESAFANADYSCYSHIMHADGQSALAIDPGRNMRGNVFACEADNDIRLLRLLNHSKSPNVELSVGDAATPDWFEAIGGAEYGPWYTCSIKALENIEKGVELTIKYAGAPAEWD 1933
EDAASIRLGTVPVAEAGSDGGAEPAGSSVPVSAAVEYGAADVSHERDEDDTVVDIAWDGPDATLVGAIDTVSGGGGADCTLLLSGSTQAPVAAGEKVVELAAVLDAGQEMGPEQPVPASEALVGGDEAMQVASEANAGEVIAQEPVEGQRAQNGGGGSRRGLVERQLRRSTRK GSTLDHIAERVGGDGCRAESVDCGGGGAATGKRKGSEEQERQGGDHRSVLGRAEKKSTAKKKPVSQRKPREARLAQGFSNKEKGKTKRDEDTVRRKENIRLEDKERERATQAKLRLQLEIGRKRVAXXXXXXXKVTRLQHKEALGRQHAEEESERQRQSAEELRIRLAAQLEENKMIKRKLVKERKRKEACRKLVDQLGDIHQRPRRKCSHPPDVAKIPPITAADARGYYAWAHEKVVCKKSDIAGNGLFSKGAVDRGQDVFAALLPDEPVESAFANADYSCYSHIMHADGQSALAIDPGRNMRGNVFACEADNDIRLLRLLNHSKSPNVELSVGDAATPDWFEAIGGAEYGPWYTCSIKALENIEKGVELTIKYAGAPAEWD
Sbjct: 355 EDAASIRLGTVPVAEAGSDGGAEPAGSSVPVSAAVEYGAADVSHERDEDDTVVDIAWDGPDATLVGAIDTVSGGGGADCTLLLSGSTQAPVAAGEKVVELAAVLDAGQEMGPEQPVPASEALVGGDEAMQVASEANAGEVIAQEPVEGQRAQNGGGGSRRGLVERQLRRSTRKTGSTLDHIAERVGGDGCRAESVDCGGGGAATGKRKGSEEQERQGGDHRSVLGRAEKKSTAKKKPVSQRKPREARLAQGFSNKEKGKTKRDEDTVRRKENIRLEDKERERATQAKLRLQLEIGRKRVAXXXXXXXKVTRLQHKEALGRQHAEEESERQRQSAEELRIRLAAQLEENKMIKRKLVKERKRKEACRKLVDQLGDIHQRPRRKCSHPPDVAKIPPITAADARGYYAWAHEKVVCKKSDIAGNGLFSKGAVDRGQDVFAALLPDEPVESAFANADYSCYSHIMHADGQSALAIDPGRNMRGNVFACEADNDIRLLRLLNHSKSPNVELSVGDAATPDWFEAIGGAEYGPWYTCSIKALENIEKGVELTIKYAGAPAEWD 911
BLAST of mRNA_P-fluviatile_contig1.594.1 vs. uniprot
Match: A0A6H5JBG8_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBG8_9PHAE) HSP 1 Score: 130 bits (327), Expect = 4.050e-30 Identity = 66/153 (43.14%), Postives = 79/153 (51.63%), Query Frame = 2
Query: 1484 HEKVVCKKSDIAGNGLFSKGAVDRGQDVFAALLPDEPVESAFANADYSCYSHIMHADGQSALAIDPGRNMRGNVFACEADNDIRLLRLLNHSKSPNVELSVGDAATPDWFE---AIGGAEYGPWYTCSIKALENIEKGVELTIKYAGAPAEWD 1933
H +V K S I G+G F K +G V ++LP F Y C H+MH D + IDPG RGN+ C D R++RLLNHS SPN EL G AA PDW+E A A WYTCS+ +E G ELTI YA P WD
Sbjct: 124 HFEVEEKPSQIEGHGAFLKRGASKGTTVHTSVLPSSEFSDDFTIEQYDCCYHVMHGDKNGVVYIDPGALFRGNLMGCLEDMGSRVIRLLNHSSSPNAELCFGGAAPPDWYEPTRAGQAAVITSWYTCSLVTRRRVEAGEELTICYAKFPPAWD 276
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1990 |
| Cds size | 1350 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815356.422779-UTR-P-fluviatile_contig1:6386935..6386986 | 1622815356.422779-UTR-P-fluviatile_contig1:6386935..6386986 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 6386936..6386986 - |
| 1693561582.9498005-UTR-P-fluviatile_contig1:6386935..6386986 | 1693561582.9498005-UTR-P-fluviatile_contig1:6386935..6386986 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 6386936..6386986 - |
| 1622815356.4737713-UTR-P-fluviatile_contig1:6389034..6389623 | 1622815356.4737713-UTR-P-fluviatile_contig1:6389034..6389623 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 6389035..6389623 - |
| 1693561583.0007765-UTR-P-fluviatile_contig1:6389034..6389623 | 1693561583.0007765-UTR-P-fluviatile_contig1:6389034..6389623 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 6389035..6389623 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815356.4339523-CDS-P-fluviatile_contig1:6386986..6387475 | 1622815356.4339523-CDS-P-fluviatile_contig1:6386986..6387475 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6386987..6387475 - |
| 1693561582.9573643-CDS-P-fluviatile_contig1:6386986..6387475 | 1693561582.9573643-CDS-P-fluviatile_contig1:6386986..6387475 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6386987..6387475 - |
| 1622815356.4431105-CDS-P-fluviatile_contig1:6387592..6387904 | 1622815356.4431105-CDS-P-fluviatile_contig1:6387592..6387904 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6387593..6387904 - |
| 1693561582.9650462-CDS-P-fluviatile_contig1:6387592..6387904 | 1693561582.9650462-CDS-P-fluviatile_contig1:6387592..6387904 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6387593..6387904 - |
| 1622815356.4520118-CDS-P-fluviatile_contig1:6388275..6388380 | 1622815356.4520118-CDS-P-fluviatile_contig1:6388275..6388380 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6388276..6388380 - |
| 1693561582.9724674-CDS-P-fluviatile_contig1:6388275..6388380 | 1693561582.9724674-CDS-P-fluviatile_contig1:6388275..6388380 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6388276..6388380 - |
| 1622815356.462573-CDS-P-fluviatile_contig1:6388590..6389034 | 1622815356.462573-CDS-P-fluviatile_contig1:6388590..6389034 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6388591..6389034 - |
| 1693561582.9826639-CDS-P-fluviatile_contig1:6388590..6389034 | 1693561582.9826639-CDS-P-fluviatile_contig1:6388590..6389034 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6388591..6389034 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.594.1 >prot_P-fluviatile_contig1.594.1 ID=prot_P-fluviatile_contig1.594.1|Name=mRNA_P-fluviatile_contig1.594.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=450bp
MGPEQPVPASEALVGGDEAMQVASEANAGEVIAQEPVEGQRAQNGGGGSR RGLVERQLRRSTRKAGSTLDHIAERVGGDGCRAESVDCGGGGAATGKRKG SEEQERQGGDHRSVLGRAEKKSTAKKKPVSQRKPREARLAQGFSNKEKGK TKRDEDTVRRKENIRLEDKERERATQAKLRLQLEIGRKRVAEKEKERRKV TRLQHKEALGRQHAEEESERQRQSAEELRIRLAAQLEENKMIKRKLVKER KRKEACRKLVDQLGDIHQRPRRKCSHPPDVAKIPPITAADARGYYAWAHE KVVCKKSDIAGNGLFSKGAVDRGQDVFAALLPDEPVESAFANADYSCYSH IMHADGQSALAIDPGRNMRGNVFACEADNDIRLLRLLNHSKSPNVELSVG DAATPDWFEAIGGAEYGPWYTCSIKALENIEKGVELTIKYAGAPAEWDV* back to topmRNA from alignment at P-fluviatile_contig1:6386936..6389623- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig1.594.1 ID=mRNA_P-fluviatile_contig1.594.1|Name=mRNA_P-fluviatile_contig1.594.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2688bp|location=Sequence derived from alignment at P-fluviatile_contig1:6386936..6389623- (Porterinema fluviatile SAG_2381) AAGCGGGGGCGGGGGAGAGAACGGATGCGTAGGTGGTGATTGGCAGGAGG
TGGGTGATGGCGATTCCTAAGCGCACTGTGTCTGAAATTTGACTATGCTT
AAAAAAAGAGGGGGGAAATTGTGCTGCAAAAATGGTTGTAGACATTATTG
CAAGCACAAACGGAAGAAAGTGTGGCAACCAAAAGGCCTGTACCACTCGG
GTTGAGTGTGATTTGTCCATAGTACATCTGACACCGCTGCTTCCCCTGTT
ACCATTGCATAGGAGGACGCCGCATCTATAAGGCTTGGCACCGTTCCAGT
GGCCGAAGCGGGCTCGGATGGCGGGGCCGAACCGGCGGGATCTTCGGTTC
CCGTGTCTGCGGCAGTTGAATACGGCGCGGCGGACGTTTCGCATGAGCGC
GATGAGGACGACACGGTGGTGGACATTGCATGGGATGGCCCCGACGCAAC
GTTGGTGGGTGCGATCGACACAGTGTCTGGTGGGGGCGGCGCGGACTGTA
CGTTACTGCTGTCTGGCTCCACGCAGGCGCCTGTAGCTGCCGGCGAAAAA
GTGGTAGAATTGGCTGCGGTCCTGGACGCTGGACAAGAGATGGGGCCTGA
GCAGCCTGTTCCGGCGAGCGAGGCCTTGGTGGGAGGTGATGAGGCGATGC
AGGTAGCGAGCGAGGCCAATGCCGGCGAAGTGATTGCACAAGAGCCGGTT
GAAGGACAGCGAGCACAGAACGGCGGCGGCGGCTCGCGAAGGGGTTTGGT
GGAAAGGCAGCTCCGGCGGTCGACCAGGAAGGCCGGTAGCACTCTCGATC
ATATAGCAGAGCGGGTAGGGGGTGACGGATGTAGGGCTGAAAGCGTCGAC
TGCGGCGGTGGCGGTGCTGCCACCGGCAAGCGGAAGGGCAGCGAAGAGCA
GGAAAGGCAGGGGGGTGATCATCGCTCTGTGTTAGGACGGGCAGAGAAGA
AGTCTACGGCGAAGAAGAAGCCTGTGTCGCAGAGGAAACCGCGGGAGGCG
AGGTTGGCTCAGGGTTTCAGCAACAAGGAAAAGGTGTGGATGCGGAAATG
TAACGGCGCATGTGTATTGCAGACTGTGTAGAAAGTACGCCTGCCTGTGG
AAAGTACTATTAGTCTACGAACGACGAGCCGCCAATGTAGTGTATGAAGC
ACAGCGGTATGAATTGTAGATACAAAACTTACTGAGCAACAGAGTGCTTA
CTTCAGTGCCCTAAAACATGCGCTGGCTGCGACCGTAACACAGGGGAAGA
CAAAGAGAGATGAGGATACGGTCAGGCGAAAAGAGAACATAAGACTCGAG
GACAAGGAGCGCGAGAGAGCCACACAAGCGAAGCTGAGATTGCAACTTGT
GAGTTTCATGCTATTTTCCGTTTCGTCGCCATCATAATCCTCGCTCCTGT
TCGGCATAGAAAACGCGCAGAACGGTAGCAGCAGTGTTGCTGAAAAAATT
CGCGCCTGCGAGCTAAAGGTGTGTCACTCTTTGTCACCGTTTCTTGTTCA
TGTCTAGGCAGAGCGTCAAGAACAAGCAGCACAAACCAACGCACCGAAAG
AGAAAAGGATCGTTGTCTCATTCATCAGCCATGTTCCGTATGACAGCTAA
TATCCCAAAGTGTTCAACCCTCGCCGAAGAGGTTATTAGAACAGGGCGCA
CTTCTGTCGTGCCCCCCCGAGCGATTCTCGCTTTGTGCATTTAATTTTGT
CTCTTCTTGTTTTTACCAGGAGATAGGGCGGAAGAGGGTGGCAGAAAAGG
AAAAGGAACGGCGGAAGGTGACTCGCCTACAACACAAGGAGGCGCTCGGG
CGGCAACATGCTGAAGAAGAGAGCGAACGACAGAGGCAGTCCGCCGAAGA
GCTGCGTATCAGATTAGCCGCTCAACTGGAGGAAAATAAGATGATAAAGC
GCAAGCTGGTGAAGGAGAGAAAACGCAAGGAGGCGTGCAGAAAGCTCGTT
GATCAGCTTGGCGACATACACCAGCGCCCTCGGCGAAAGTGCTCGCACCC
TCCTGATGTGGCGAAGATCCCTCCCATTACGGTGAGAATTGTGTCTTTCA
GTTCGCTTCAGAAAAATGAAAATGATCGTATTGTCGCTCAGCTTTCATTA
AAGATGTATCGTGTTTCACCATGCCACCGCACTCTCTCACACAAACAGGC
GGCTGATGCACGCGGATACTACGCATGGGCGCACGAGAAGGTCGTGTGTA
AGAAGAGCGATATCGCGGGAAACGGTCTTTTCAGCAAAGGCGCGGTCGAT
AGAGGTCAAGATGTTTTCGCGGCACTTCTTCCAGATGAACCAGTGGAGTC
AGCGTTTGCCAATGCAGACTACAGCTGCTACTCGCACATCATGCATGCAG
ACGGACAAAGCGCGCTAGCGATTGATCCAGGCCGTAACATGAGGGGCAAC
GTGTTCGCATGCGAAGCGGATAACGACATTAGGCTCTTACGGCTTCTCAA
TCACTCGAAATCACCGAATGTAGAGCTCTCCGTAGGCGACGCCGCGACGC
CCGATTGGTTCGAGGCTATCGGAGGTGCCGAGTATGGGCCTTGGTACACG
TGCTCGATCAAGGCGCTTGAAAACATCGAGAAAGGAGTAGAGCTCACGAT
TAAGTATGCTGGCGCGCCTGCAGAATGGGATGTATAGGTGAAAGAAAATG
ATTTTTCCATGGCGCACACGGGATGCAGAGATTGGGGG back to topCoding sequence (CDS) from alignment at P-fluviatile_contig1:6386936..6389623- >mRNA_P-fluviatile_contig1.594.1 ID=mRNA_P-fluviatile_contig1.594.1|Name=mRNA_P-fluviatile_contig1.594.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2700bp|location=Sequence derived from alignment at P-fluviatile_contig1:6386936..6389623- (Porterinema fluviatile SAG_2381) ATGGGGCCTGAGCAGCCTGTTCCGGCGAGCGAGGCCTTGGTGGGAGGTGA TGAGGCGATGCAGGTAGCGAGCGAGGCCAATGCCGGCGAAGTGATTGCAC AAGAGCCGGTTGAAGGACAGCGAGCACAGAACGGCGGCGGCGGCTCGCGA AGGGGTTTGGTGGAAAGGCAGCTCCGGCGGTCGACCAGGAAGGCCGGTAG CACTCTCGATCATATAGCAGAGCGGGTAGGGGGTGACGGATGTAGGGCTG AAAGCGTCGACTGCGGCGGTGGCGGTGCTGCCACCGGCAAGCGGAAGGGC AGCGAAGAGCAGGAAAGGCAGGGGGGTGATCATCGCTCTGTGTTAGGACG GGCAGAGAAGAAGTCTACGGCGAAGAAGAAGCCTGTGTCGCAGAGGAAAC CGCGGGAGGCGAGGTTGGCTCAGGGTTTCAGCAACAAGGAAAAGATGGGG CCTGAGCAGCCTGTTCCGGCGAGCGAGGCCTTGGTGGGAGGTGATGAGGC GATGCAGGTAGCGAGCGAGGCCAATGCCGGCGAAGTGATTGCACAAGAGC CGGTTGAAGGACAGCGAGCACAGAACGGCGGCGGCGGCTCGCGAAGGGGT TTGGTGGAAAGGCAGCTCCGGCGGTCGACCAGGAAGGCCGGTAGCACTCT CGATCATATAGCAGAGCGGGTAGGGGGTGACGGATGTAGGGCTGAAAGCG TCGACTGCGGCGGTGGCGGTGCTGCCACCGGCAAGCGGAAGGGCAGCGAA GAGCAGGAAAGGCAGGGGGGTGATCATCGCTCTGTGTTAGGACGGGCAGA GAAGAAGTCTACGGCGAAGAAGAAGCCTGTGTCGCAGAGGAAACCGCGGG AGGCGAGGTTGGCTCAGGGTTTCAGCAACAAGGAAAAGGGGAAGACAAAG AGAGATGAGGATACGGTCAGGCGAAAAGAGAACATAAGACTCGAGGACAA GGAGCGCGAGAGAGCCACACAAGCGAAGCTGAGATTGCAACTTGGGAAGA CAAAGAGAGATGAGGATACGGTCAGGCGAAAAGAGAACATAAGACTCGAG GACAAGGAGCGCGAGAGAGCCACACAAGCGAAGCTGAGATTGCAACTTGA GATAGGGCGGAAGAGGGTGGCAGAAAAGGAAAAGGAACGGCGGAAGGTGA CTCGCCTACAACACAAGGAGGCGCTCGGGCGGCAACATGCTGAAGAAGAG AGCGAACGACAGAGGCAGTCCGCCGAAGAGCTGCGTATCAGATTAGCCGC TCAACTGGAGGAAAATAAGATGATAAAGCGCAAGCTGGTGAAGGAGAGAA AACGCAAGGAGGCGTGCAGAAAGCTCGTTGATCAGCTTGGCGACATACAC CAGCGCCCTCGGCGAAAGTGCTCGCACCCTCCTGATGTGGCGAAGATCCC TCCCATTACGGAGATAGGGCGGAAGAGGGTGGCAGAAAAGGAAAAGGAAC GGCGGAAGGTGACTCGCCTACAACACAAGGAGGCGCTCGGGCGGCAACAT GCTGAAGAAGAGAGCGAACGACAGAGGCAGTCCGCCGAAGAGCTGCGTAT CAGATTAGCCGCTCAACTGGAGGAAAATAAGATGATAAAGCGCAAGCTGG TGAAGGAGAGAAAACGCAAGGAGGCGTGCAGAAAGCTCGTTGATCAGCTT GGCGACATACACCAGCGCCCTCGGCGAAAGTGCTCGCACCCTCCTGATGT GGCGAAGATCCCTCCCATTACGGCGGCTGATGCACGCGGATACTACGCAT GGGCGCACGAGAAGGTCGTGTGTAAGAAGAGCGATATCGCGGGAAACGGT CTTTTCAGCAAAGGCGCGGTCGATAGAGGTCAAGATGTTTTCGCGGCACT TCTTCCAGATGAACCAGTGGAGTCAGCGTTTGCCAATGCAGACTACAGCT GCTACTCGCACATCATGCATGCAGACGGACAAAGCGCGCTAGCGATTGAT CCAGGCCGTAACATGAGGGGCAACGTGTTCGCATGCGAAGCGGATAACGA CATTAGGCTCTTACGGCTTCTCAATCACTCGAAATCACCGAATGTAGAGC TCTCCGTAGGCGACGCCGCGACGCCCGATTGGTTCGAGGCTATCGGAGGT GCCGAGTATGGGCCTTGGTACACGTGCTCGATCAAGGCGCTTGAAAACAT CGAGAAAGGAGTAGAGCTCACGATTAAGTATGCTGGCGCGCCTGCAGAAT GGGATGTATAGGCGGCTGATGCACGCGGATACTACGCATGGGCGCACGAG AAGGTCGTGTGTAAGAAGAGCGATATCGCGGGAAACGGTCTTTTCAGCAA AGGCGCGGTCGATAGAGGTCAAGATGTTTTCGCGGCACTTCTTCCAGATG AACCAGTGGAGTCAGCGTTTGCCAATGCAGACTACAGCTGCTACTCGCAC ATCATGCATGCAGACGGACAAAGCGCGCTAGCGATTGATCCAGGCCGTAA CATGAGGGGCAACGTGTTCGCATGCGAAGCGGATAACGACATTAGGCTCT TACGGCTTCTCAATCACTCGAAATCACCGAATGTAGAGCTCTCCGTAGGC GACGCCGCGACGCCCGATTGGTTCGAGGCTATCGGAGGTGCCGAGTATGG GCCTTGGTACACGTGCTCGATCAAGGCGCTTGAAAACATCGAGAAAGGAG TAGAGCTCACGATTAAGTATGCTGGCGCGCCTGCAGAATGGGATGTATAG back to top
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