mRNA_P-fluviatile_contig1.592.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.592.1
Unique NamemRNA_P-fluviatile_contig1.592.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.592.1 vs. uniprot
Match: D8LPI1_ECTSI (Sulfhydryl oxidase n=2 Tax=root TaxID=1 RepID=D8LPI1_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 6.260e-25
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 2 
Query:    2 SRQQLYEWLFIVHNKVNEKVGDKQETSLQMVVDKYKKFRATCSPSSKSLGCTEPANKNAKMRCRLVIEPVDRFAKR 229
            SRQ L+EWLFI+HNKVN+K+GDKQET L+ VVDKY++FRA C    K+ GCT+PA  N KM CRLV+EPV+R   R
Sbjct:   92 SRQALFEWLFIIHNKVNDKIGDKQETDLESVVDKYERFRAKCH-HQKATGCTDPARHNEKMICRLVVEPVNRKRNR 166
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BLAST of mRNA_P-fluviatile_contig1.592.1 vs. uniprot
Match: A0A6H5JX91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX91_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.110e-13
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 2 
Query:   14 LYEWLFIVHNKVNEKVGDKQETSLQMVVDKYKKFRATCSPSSKSLGCTEPANKNAK 181
            L+ WL I+HNKVN+K G KQETSLQ VVDKY+KFRA+C  + K+LGCTEPA K  +
Sbjct:  431 LFGWLAIIHNKVNKKNGAKQETSLQAVVDKYEKFRASCQ-NRKALGCTEPAKKTRR 485
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPI1_ECTSI6.260e-2564.47Sulfhydryl oxidase n=2 Tax=root TaxID=1 RepID=D8LP... [more]
A0A6H5JX91_9PHAE8.110e-1366.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6378551..6379063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionEsV-1-161 thiol oxidoreductase
Ec32 orthologEc-06_005300.1
Hectar predicted targeting categorysignal anchor
Exons1
Model size513
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.592.1prot_P-fluviatile_contig1.592.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6378639..6378854 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.304339-UTR-P-fluviatile_contig1:6378550..63786381622815356.304339-UTR-P-fluviatile_contig1:6378550..6378638Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6378551..6378638 +
1693561582.8003001-UTR-P-fluviatile_contig1:6378550..63786381693561582.8003001-UTR-P-fluviatile_contig1:6378550..6378638Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6378551..6378638 +
1622815356.323867-UTR-P-fluviatile_contig1:6378854..63790631622815356.323867-UTR-P-fluviatile_contig1:6378854..6379063Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6378855..6379063 +
1693561582.8204136-UTR-P-fluviatile_contig1:6378854..63790631693561582.8204136-UTR-P-fluviatile_contig1:6378854..6379063Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6378855..6379063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.3144164-CDS-P-fluviatile_contig1:6378638..63788541622815356.3144164-CDS-P-fluviatile_contig1:6378638..6378854Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6378639..6378854 +
1693561582.8121228-CDS-P-fluviatile_contig1:6378638..63788541693561582.8121228-CDS-P-fluviatile_contig1:6378638..6378854Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6378639..6378854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.592.1

>prot_P-fluviatile_contig1.592.1 ID=prot_P-fluviatile_contig1.592.1|Name=mRNA_P-fluviatile_contig1.592.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=72bp
MVVDKYKKFRATCSPSSKSLGCTEPANKNAKMRCRLVIEPVDRFAKRRMV
GACVAAAVVVVVIALVVVARK*
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mRNA from alignment at P-fluviatile_contig1:6378551..6379063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.592.1 ID=mRNA_P-fluviatile_contig1.592.1|Name=mRNA_P-fluviatile_contig1.592.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=513bp|location=Sequence derived from alignment at P-fluviatile_contig1:6378551..6379063+ (Porterinema fluviatile SAG_2381)
CTCGCGACAACAGCTGTATGAGTGGCTCTTTATCGTACACAACAAGGTCA
ACGAAAAAGTCGGCGACAAACAAGAGACCAGTTTGCAAATGGTCGTGGAC
AAGTACAAAAAGTTTAGAGCGACTTGTTCTCCCTCCAGCAAATCACTCGG
GTGCACCGAGCCCGCGAACAAAAATGCGAAGATGAGGTGCAGGCTTGTGA
TTGAACCCGTCGATAGATTCGCGAAAAGACGGATGGTCGGAGCATGTGTC
GCCGCGGCCGTTGTAGTGGTCGTGATTGCCCTTGTTGTCGTTGCACGTAA
ATGATAGCGACCTCAATAAAACTATTCGAAGCCTCCAGTTCCTTCTTTTG
CGCCACCACGACCGCCGCTTCTAAAATCTAGCGACATCCAAGGCGATCTC
CTCTGTGGTGAACCGGTATTCGCTGCAACCCCACCTCCAGTTCCACCACC
CACCTCGGTGGTTGGGGGTGTTGCCCAACCTTCAGAATTTGTCGGCGAAG
ACGATGGAGTTGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6378551..6379063+

>mRNA_P-fluviatile_contig1.592.1 ID=mRNA_P-fluviatile_contig1.592.1|Name=mRNA_P-fluviatile_contig1.592.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=432bp|location=Sequence derived from alignment at P-fluviatile_contig1:6378551..6379063+ (Porterinema fluviatile SAG_2381)
ATGGTCGTGGACAAGTACAAAAAGTTTAGAGCGACTTGTTCTCCCTCCAG
CAAATCACTCGGGTGCACCGAGCCCGCGAACAAAAATGCGAAGATGAGGT
GCAGGCTTGTGATTGAACCCGTCGATAGATTCGCGAAAAGACGGATGGTC
GGAGCATGTGTCGCCGCGGCCGTTGTAGTGGTCGTGATTGCCCTTGTTGT
CGTTGCACGTAAATGAATGGTCGTGGACAAGTACAAAAAGTTTAGAGCGA
CTTGTTCTCCCTCCAGCAAATCACTCGGGTGCACCGAGCCCGCGAACAAA
AATGCGAAGATGAGGTGCAGGCTTGTGATTGAACCCGTCGATAGATTCGC
GAAAAGACGGATGGTCGGAGCATGTGTCGCCGCGGCCGTTGTAGTGGTCG
TGATTGCCCTTGTTGTCGTTGCACGTAAATGA
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