mRNA_P-fluviatile_contig1.590.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.590.1
Unique NamemRNA_P-fluviatile_contig1.590.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6339779..6344768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.5632896-CDS-P-fluviatile_contig1:6339778..63398611622815268.5632896-CDS-P-fluviatile_contig1:6339778..6339861Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6339779..6339861 +
1693561317.4286487-CDS-P-fluviatile_contig1:6339778..63398611693561317.4286487-CDS-P-fluviatile_contig1:6339778..6339861Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6339779..6339861 +
1622815268.575018-CDS-P-fluviatile_contig1:6344686..63447681622815268.575018-CDS-P-fluviatile_contig1:6344686..6344768Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6344687..6344768 +
1693561317.4400654-CDS-P-fluviatile_contig1:6344686..63447681693561317.4400654-CDS-P-fluviatile_contig1:6344686..6344768Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6344687..6344768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.590.1prot_P-fluviatile_contig1.590.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6339779..6344768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.590.1

>prot_P-fluviatile_contig1.590.1 ID=prot_P-fluviatile_contig1.590.1|Name=mRNA_P-fluviatile_contig1.590.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=55bp
SAGSVDGDGPFAVAMTQAFMESGNQYERDWTRSQDVRTSLKEVCSGAHAD
DRPPA
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mRNA from alignment at P-fluviatile_contig1:6339779..6344768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.590.1 ID=mRNA_P-fluviatile_contig1.590.1|Name=mRNA_P-fluviatile_contig1.590.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4990bp|location=Sequence derived from alignment at P-fluviatile_contig1:6339779..6344768+ (Porterinema fluviatile SAG_2381)
AGTGCAGGGTCGGTTGATGGGGATGGTCCTTTTGCTGTGGCTATGACTCA
GGCCTTCATGGAATCTGGAAACCAATATGAGAGGTGTGTGCGTGCGTGAT
CGTATTATTTTGTCTGCGTCGGCAGCGGTGGCAGCATCAGGAAAGAAGGG
TGCAAGTTGTCATTCGCGAACGGCACAAGTGCTCTACGCGTGCTTTACGT
TTGTGAAGCTTTTGAGATCCTCCTGTCGGATAGAAAAATGACTGAAAATC
GATGTGTGAGGAACAGCTGTGTGTCAAAAGCTGCACAACCCCCATTTCTG
CCTTGTGCACGGTCGAACCAGCAGTAGTAACTCCTCCCTGCCACCCATCC
AAGTGTTGCTGTAAAAGATACGTTTTTGACACTCGCCCCAAAAGGCGGGG
CTTTTCTACACGGACAGGTTCAACAAACATAATTACGCGTTCACCTTATC
CACAAATCGCTGAAACAGCCGTTCATCGCTCCGACTGAAAAACGTGTTCT
CCCAACGAAACCATTTCTCTCCCTCTAAAAGCTGAGAAGCATTCCTCTTC
TGCAGAAGAGCACGGAACAGCAGTCTACCATTACCACCGTACTTTGCGAG
AGAGGCTCGAATCTCTCCTGCGAACTCAAGTCTCCTAGCGCTCAGTTTCT
TCCCGTACGGCCGAGCGCCCTTCTCTGTCGTTTCTCCCGTGCAAGCGGAG
TTCACTACCGCCCCCAACACTTCGTTACCCACGGTGTGCGCGGCGGTATT
CGCTGATGCCGCCATGTAGCTGTTTCTTAGAGTGGTGCTCGAAACTTGTA
GAAAGCTACTGAAGTCCTCCAAATTCGAGCCACTGATTTGTCCAGAGTGA
AGGGCATGCGTGGACCAAAAGGTTCGACAGACATGAGGCCCAAAATTGGA
GATGCCCAACCAATGCATGCCAATTCTCTTGAAGCGCGACGATATGTCCT
TCTGCGTCCAGCTCTGACCCTTGGTGTTGACAAACAGCCTCCTGGCTTCA
TTGTCCAAGCATAGTGTGCCGCAAAACCTGTGTCCCACGATAGCTATGAA
CCGTGTGATCATGGACTGATCGGGCGACAGCATAAAGTGTGACACAGGCG
GTGCAGATGAGGTCCCTCCCGAAGATGCAGTTTTGAACCTTCTGTTCTTG
AACGAAAACTTGTAGTGCGTCGCGTCTGGCACGAGCACAAACTCGTCGAC
GGTTGCTTCTCGCAGCACCTGCGAGCGCTGGAAAGAAAAGCTCAGGAGAA
GCAGGGTACAGAGGTTAGCCACGTCGGTGTACGTAACACCCGCAGTTAGC
ACGTGCTTGTACAGCTGTTCTCCCTCTTCCTGTGAAATGCGGAGGAACGC
GGCAGGGTACTCGAGGCTTGCCCCCAGCGCTTGCCCAATCAATTTCTTGA
GGGGTTTCCAAACCTGCCCCGAGAGAGTCTGAAGCATTGTGTGCATGAGA
TCAATGGATTTCGGGTCTGTCGGGTCGAGCATCTTGCCTCCCTCAATCTT
TTTGTTCATGCCGGCGGGGTCCATGTTGGCAGCAACGACCCGTTCCACCT
TGTCCTTCTTTCGTGCCTTCCACAGCTCGCAATCGAAGTGTGCCAAAATT
TCATTTAGCTTGTTGCTGACACTGTCGTCAAACAGAGACGACCCTCCTTC
AAGCCTGCTGCACTCCGCTTGGACCTTGAGGCACGCCCTCTCTCCGTAGG
CAGAAAAGATGCTGCCTAGCACCCCGCCGTCGATTTTACCAATGGCTTCG
ACCGATTTGTCCCTGATGACATCAATAACGCCGACCACAGTCCCGGATTC
GACCCCGTGCTTCGCGTGTTGGATGTAGGATCGCACCAACGCCGCGATAC
TGTCCATGTCATCTGGGGCCGTCATGGTTGCTCGAAACACGGCGTAGACA
TCGGCAATGTGCACACCCTTTATGTACTTGTGTTCGCACGCTTTCTCGAG
CATCGTGTAGTTGATGTTCCGATGATGCGTGTCGATGGCGGCGAACACGT
CTTTCCAGTTGGTTTGAAAGCTTTGGATGGGCCCGTCGAAAAATTGCGGC
GGGCACTTGAATCTCTGCTCCATCGCTCGCCTTTCCGTGACGGAGAGTGG
TAGGATGATGGACTCGAGGCAGCAGGGCCGGGCCAAAATCGCCGTTGCAA
ACCAGAGTAGGGACAGCGCCATGGAGCACGAGGCGTACACAGACGAACTG
CCGACTTGTCCCCGCTCCGAAAAAATCATGGAGAACTCGCGCTTGGTAAA
AAACCTGAAGCGCTCGTCCTCTTCCTCGACGTTCATCTTCATGTAGGCCA
GTATGTGTGCCGAGGTGTCCACCCTGTACGGAAGTCCCATAAAGACCGAG
CGCGTGAAACCATTTCTCTTGAGCCTGTCTACGGCGTTGCGACGTTGTTC
GAGTTTGGTCCTCCCCTTTTCCGAAGAGTTGTCCAGATGCGCCCAGTGGT
ACGTTGCGGCGTTGAGCTTGATTCTGTTCTGCAACAGGTTAGGGAAAAGC
TGGGTGTACACAATGAACCCCATCAACGTCTTGTTGTCGTGGAACGACTC
GGTCCAGGCGAGCTTTTCGCCTTCGGGCAAGTGATCAAAAGGTTTACTTT
CGCTGCTCCTGGACTCGTAGAACACCTTGACCTGCGTAGGCGTCGGCGCA
GTGAAGACTTTGTCGATCGTGACCGGGCACCGGAAAGTCATTTTCGTGTG
CGTTTTCGATTCGGCCAATTCCTTTTCATCGAATGCCTTGTTGTCGAGCG
TCGTTACGGATTCTTTCGCTGACGACGAAACTTTCACGCGCTTGTTGGCG
CGAGAAGAGGCCATAGCTCAGAATGAGGCTGGGGGGTGCTTCACTCCACA
CCAAAGTTATTTACTAACAATCATCCGATCTTGGTGAAGCATTGCTTGGT
TCCTATGGTTTGCGGTACCGTGCGCTGGTCTGAGTTGTTGTCGGAGCCAC
CACTAGTGGTACTGCTACCCCCGCCACCAACCGCTGTATATTTGTTGAGC
AGACACTTGGTCATTGGAATGGTCTCGCTTTGCACGACAACTTGTTTTGC
GGAAGTTAAGGGGCGGACGTCAACAAACAGTGAGGGCACCAGACAAGGCA
AAACATTATGGCGTTCGTCTACAAATGTGCTGTCGTCCACCTCGAAGACG
TCACTCCTCATGAAACGGAAGACGTCCCGGCCTTCCTCGTGTTCGACAGA
GCACAAGGGAGGGAAGTCAGTCTACGCCGACCGATATGATTCAACTAGTA
ATCGTGCCCAACGGTGCAAAAGGCCTAGAAGCGCTCAGTCGACTCTATTT
CATCGGTGGATGCTTGGTTTGACAGGCTTGCCCAAAGGGCACGGGTTCGA
GTACGTTAAGTACCGTAGTAATTTGAGGACTTCCACTGCCCGCACGGTAA
CATTCTCCATATGAAGAGGTTGAAGCGGGCCTTTTGGGTCGAGGGCGTAG
CTGGCGCGGCACGCACAGCGGAGGAGATAATCCGATCGCAGGAGCCGTAT
TGGAAGATCGTGCGTCTTCCGCCTCCGCTACCTGTTTTTGTGCCTGTGTT
CAAGCGTGTGAAACGGCTGCTAGACTTCACACGTTAACTAGAGACGTCGC
AGCCTACAGGGTGCTCTTCGATGGAACAGTGGTGGCGGAGTTCAAGTTGT
AGGGGAGTGCACTGTAGTGTTGGAATACAACGTTCGAATTGCCGTCTAAA
AATATGGTTTTGGGCCTTGTCGCCCGGGCGTAACTCACCCATTGTAGCTG
TCTGGTGACGGGTGTAGAGTACGGTAGGCCCTTGCTTGGTGATTGGCTTG
GGGTGCATTACTTCGTTGTCCTCTCCAAAACATACGGGCGGTGGGCCTAC
AGGGAGCGATCGACTTGGGGTAGAAAACTTCAAATCGGGCCGATTGTACA
TGGTCCCAAACGTTGCAACTTTTCCCAACAATGTTCGAAACAGAGACGTT
GGAACCAGTTCGCTGAGTGTCTGATTTTCGGGGGAGAAATGCCCCGGCCC
TGCGCAACCTTAACCACAACAGTCAGAGTGGGACACGACAACGGGGGAGT
GGTACTCGGAGCTTTGGGATCGGGGTCTTAGGGGTGTGGCATGGGAGAGG
AGAGGCGGCGATTATTGGTGAGACGTTAAAACCCCGGCCTCTTGTCTACG
CTCGGTGCCTGACGGTCAAAGGCATCGTCGAGTGTACCGATCCATTGGTC
GTGTGCTTTCGTCGAGCGGTTGCAGACAGTCTCCATCTGCGCCTTCTCAA
ATATTCAGCGCCTCTTGGTCACCCAGCGCGGTAGGATTTGCACAAGCTAC
AGCAAGGCTGCTACCATGTCCCGGGGTTGGAGCGCATGCGTATTTCAGCC
GTTTGTATTGTACTGCAACAGGGGTCGGGTCACGATATTTCCGCTGCTGC
CCGTAGGTGGGTACACAAGAGCAGACCGGGGTAGCGCTCAGAAGTAGCAG
ATGAAAAGTAAAGTTCATTTCAAACCTCCGTGAGGTGTCCTTCGCCTCTT
CAGTGTATTCAAATAGTCCAGCTGCACACATCGTAGTGGCGAGCTTCTAC
AGGAGACCTTTCGTACTTTGAAGGAGGCAGCCTGATCCAAAGAAGTAGCT
TGACGGCAAGAGAACGTTCTTAGTGATCATCACAGCAATAGCTCCAGCAT
ACCCCTACGTCACCCACTTCGCGCTCGGCATGGATTCAGGTCTGTCCTTG
AAGCCTTGCGCAAGAGAACGTTCTACAGCGATCATGACACTAGCAATAGC
TCCAGCATACCCCTATGTCACCCACTTCGCTCTCAGCATCCCCAAAAACA
ATGGCAGCTACGTTCATCCATGCGACCGTGGGGATACTGGGCAGCAAATC
GCGAATCCAGGTCTGTCCTTGAAGCCTTGTGTTCCCGCTCACACGGTATG
CCCAACAGGGACTGGACACGATCGCAAGATGTACGTACATCGCTCAAAGA
AGTGTGCTCCGGAGCGCATGCTGATGACCGACCGCCGGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6339779..6344768+

>mRNA_P-fluviatile_contig1.590.1 ID=mRNA_P-fluviatile_contig1.590.1|Name=mRNA_P-fluviatile_contig1.590.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=330bp|location=Sequence derived from alignment at P-fluviatile_contig1:6339779..6344768+ (Porterinema fluviatile SAG_2381)
AGTGCAGGGTCGGTTGATGGGGATGGTCCTTTTGCTGTGGCTATGACTCA
GGCCTTCATGGAATCTGGAAACCAATATGAGAGAGTGCAGGGTCGGTTGA
TGGGGATGGTCCTTTTGCTGTGGCTATGACTCAGGCCTTCATGGAATCTG
GAAACCAATATGAGAGGGACTGGACACGATCGCAAGATGTACGTACATCG
CTCAAAGAAGTGTGCTCCGGAGCGCATGCTGATGACCGACCGCCGGCGGG
ACTGGACACGATCGCAAGATGTACGTACATCGCTCAAAGAAGTGTGCTCC
GGAGCGCATGCTGATGACCGACCGCCGGCG
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