mRNA_P-fluviatile_contig1.586.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.586.1
Unique NamemRNA_P-fluviatile_contig1.586.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.586.1 vs. uniprot
Match: D7FZV2_ECTSI (EsV-1-157 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV2_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 3.320e-64
Identity = 117/145 (80.69%), Postives = 127/145 (87.59%), Query Frame = 2 
Query: 1535 MPNMIHVVNMDIVEIVEFLLKSGADETVVDNEGKTAMQRLNGGILHPNLHSYTKQIQEDVDLARRPRELLAIALANRVDKRWRRRALLVMCIARHRKGEAQLL---GGERQRRLGSCVGVGAPRGVGNGD*RDISDDRGVPVKPV 1960
            MP MIH VNM IVEIVEFLLKSGADETVVDNEGKTAMQRL+GGILHPNLHSYTK+ QEDVDLARR RELL  ALA+  DKRWRRRALLV+CIARHR+G+AQLL   G ERQR+LGSC G GA RGVG+GD  DISDDRG+PVKP+
Sbjct:  136 MPYMIHAVNMGIVEIVEFLLKSGADETVVDNEGKTAMQRLDGGILHPNLHSYTKETQEDVDLARRARELLTNALADGADKRWRRRALLVLCIARHRRGKAQLLDFWGRERQRQLGSCGGAGAGRGVGSGDLEDISDDRGIPVKPI 280
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZV2_ECTSI3.320e-6480.69EsV-1-157 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6321382..6324040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2223
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.586.1prot_P-fluviatile_contig1.586.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6321687..6322070 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.1264455-UTR-P-fluviatile_contig1:6321381..63216861622815356.1264455-UTR-P-fluviatile_contig1:6321381..6321686Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6321382..6321686 -
1693561580.3088584-UTR-P-fluviatile_contig1:6321381..63216861693561580.3088584-UTR-P-fluviatile_contig1:6321381..6321686Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6321382..6321686 -
1622815356.2129838-UTR-P-fluviatile_contig1:6322070..63235401622815356.2129838-UTR-P-fluviatile_contig1:6322070..6323540Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6322071..6323540 -
1693561580.32416-UTR-P-fluviatile_contig1:6322070..63235401693561580.32416-UTR-P-fluviatile_contig1:6322070..6323540Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6322071..6323540 -
1622815356.2220473-UTR-P-fluviatile_contig1:6323976..63240401622815356.2220473-UTR-P-fluviatile_contig1:6323976..6324040Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6323977..6324040 -
1693561580.3324904-UTR-P-fluviatile_contig1:6323976..63240401693561580.3324904-UTR-P-fluviatile_contig1:6323976..6324040Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6323977..6324040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.2005208-CDS-P-fluviatile_contig1:6321686..63220701622815356.2005208-CDS-P-fluviatile_contig1:6321686..6322070Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6321687..6322070 -
1693561580.316323-CDS-P-fluviatile_contig1:6321686..63220701693561580.316323-CDS-P-fluviatile_contig1:6321686..6322070Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6321687..6322070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.586.1

>prot_P-fluviatile_contig1.586.1 ID=prot_P-fluviatile_contig1.586.1|Name=mRNA_P-fluviatile_contig1.586.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=128bp
MPNMIHVVNMDIVEIVEFLLKSGADETVVDNEGKTAMQRLNGGILHPNLH
SYTKQIQEDVDLARRPRELLAIALANRVDKRWRRRALLVMCIARHRKGEA
QLLGGERQRRLGSCVGVGAPRGVGNGD*
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mRNA from alignment at P-fluviatile_contig1:6321382..6324040-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.586.1 ID=mRNA_P-fluviatile_contig1.586.1|Name=mRNA_P-fluviatile_contig1.586.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2659bp|location=Sequence derived from alignment at P-fluviatile_contig1:6321382..6324040- (Porterinema fluviatile SAG_2381)
CTGCTCGTTGGCCTAAGAGTTGGAGCTTTGTACCGTGAGGTGGCTTTTCA
TCTGTTCGTGAAAGGTGGGTGGGTGCTTGCCTTTTTGTCGCTGTGTGCGG
AGCCGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCTC
CTCTCTCCCGCTCCGCTCACAGGCCGAAGTAGTTTTGCTTTGTATCACCA
CTGCCGTGAGGTGACGGACATTTGTTGTAGGTGGTTGCCCGTTTGCTGCT
GTGTGGGACTGACGTGTGTATATGTGGCTTTGTTTATCTCCCTCTTCTCT
CTCTCTGCTCGCCGGCCTATGTAGTTTTGTACTACTGCTGTGAGACGTGT
GTGTGGCGTCCCTCTTCTCTCCCTCTTCTCCCTCTCTCTGCTCAGACTTC
TGTTGTGTGTATTTGCCCATTTGTCGCTGTACGGGGAGACTGATGATCTC
TCTTTTCTCCCTCCTCGCTGGTTTCGCGTTGCTTCACCCCAAACAACTAG
GGAAGAACTGCACCGGCGAGCCCCACCGGGTAGGCACATTCGACCCACCC
GACATCCAAAATCGATCTTGACGCAGTGACCACCCTCGTGAAGCATGGTG
CCGGCATCAACGTCCGTGAAAATGGCAGAAACACGCCGTTGCGACTGGCG
GCAGCACGTAACAGCCCCTTCTGGGTCAGAAGGGGCCGCGCATGTGATGG
TCCTCTGCTGAAGTCGGGTGCGGATGTCAACGCCCAAGACAGCGCACATC
AAACGCCGGTACACAGCCGCGCGTGTGGTGGACCTTCAGCTGATATCACC
CCAAGACAGCCGTAAAATCCGAGTCACAAGGAGCCGCGCATGTGGTGGAC
CATCTGCTGAAGTCAGGTGTGGACGAGACGACCGTGGATGAGGATGGCAA
AACAGCGGTAGGTGCAGCTACCAGAAGGATGTCGAGCGCGTGCGCAAGCT
ATGGCGAACGCCCCGGCCGGCAGGGTGCAGTCGAGAGAGAAGAGAAGTAG
TGCGCATGTCGGCGTAGCACGGAGGAGTCGCAGCGGTTCTGAGCTTCTTC
ACACGGGCGGGCTCGCCGGATGTGGCGCGGTGGTGATGAGCGGATCGGTG
GCGACTAAACGGTGTTGCGCGGAAGGTGCTGGGGTCGGAGGAGATATCTG
TAAAAGCCTGGTGAGTCGTGTCGTTTTTGGTGGCGATGGGCGATGCCAGA
GCCTCAAATATAGGCCTTGATGGTGTCTTGTTTTGCCGGGAGTTGAAAAC
CTCCAAACACTGATCCGTTTGGTTGATTTTGCAGCGCCTTTCGTCAAATA
TTTATTTCAACAACCATCCTGTAATATAGCAGGTAGCTCGCGTGACACTG
GAGGCTCACGGAACAACGGGGCGAACGTCGGCCAGGACGAACACTGTTGT
AGCACGACCCGAGCTGCTTATTTTCGGGGGAGCTCTGGCCGGGGTGTAGA
AGGCGGTGTTTGCATCGGGGCGGAAGGGTTTGGGAAGCGGGCAACGTGAT
CATGCCGTGGTACGGGTGTACGTTTGTGTGGTGAGGCTGGTTCTTTGGCA
ACACGTTGTTATCACGTCTACACCGTTTGGCGTCGCATTACTATTTTTGG
TTGGGAATGTCGGAACACAACGTTTGACTGAAACACGATTTGGTGTGATT
TGATGCGAATCCTCATGGAAGGTGGGGGCGACGCAACTCTTCGAGACCGG
GGCCACCATTTCCCACTGGTGTAAGAACGATGATCAAGCTCGGGGTGGAC
GTTAATGGTGCTGACTGGTCAGGGTTCACACCGCTTCATTGGACGTCGGA
CAATACCACGGTGGATCTACTCATCGAAACTGGGGCCAGCATCGAAGCTC
GGGAGGTAGGAGGCAGCACGCCTCTCAATTTTACTCACGAATTGGACGAA
ATCTGCGCCCTCGTGAACCGCGGTGCAGACTTCAATACACAGGATAAGGA
CGGCCGCACGCCTTTGCACGATGCCCAACATGATCCATGTTGTTAATATG
GACATCGTCGAGATAGTGGAGTTCTTGCTCAAGTCAGGCGCAGACGAGAC
CGTGGTTGACAATGAAGGCAAGACAGCCATGCAGAGATTGAATGGAGGTA
TACTACATCCAAATTTACATTCTTACACCAAACAAATACAAGAGGACGTC
GACCTTGCCAGGCGCCCACGCGAGCTTCTGGCTATCGCTCTGGCCAACAG
AGTCGACAAGAGGTGGCGTCGCCGGGCTCTTCTGGTAATGTGCATCGCAC
GCCACCGTAAGGGGGAGGCGCAGCTGCTGGGTGGGGAACGCCAGCGACGA
CTGGGCTCGTGCGTCGGCGTGGGTGCTCCACGCGGGGTTGGGAATGGGGA
TTAAAGGGATATTTCGGATGATCGCGGGGTACCTGTGAAGCCGGTGAGTT
AATGGGGGTTTGGTGGCGTTGCTCGAAGCTTGAATAGTGTGGTTCGTGTT
TTGATTTCCCTTGAAACTCGCTTGTGGTGTTAACCAGCTCGATCTTGCTG
TCATCTTTGGTTGAACAACACCGCATCCCAAATACAAGATTCAAACTCCT
CCCCGCACACCACGTGGCCGAACACAGATGGGCATGTGACCAGACCGGAA
CTGGTCGTGGCGTTAGGCAATTCTCAGGCCAGGGGGCGACCAGGAATTGC
GCATTAGCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6321382..6324040-

>mRNA_P-fluviatile_contig1.586.1 ID=mRNA_P-fluviatile_contig1.586.1|Name=mRNA_P-fluviatile_contig1.586.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=768bp|location=Sequence derived from alignment at P-fluviatile_contig1:6321382..6324040- (Porterinema fluviatile SAG_2381)
ATGCCCAACATGATCCATGTTGTTAATATGGACATCGTCGAGATAGTGGA
GTTCTTGCTCAAGTCAGGCGCAGACGAGACCGTGGTTGACAATGAAGGCA
AGACAGCCATGCAGAGATTGAATGGAGGTATACTACATCCAAATTTACAT
TCTTACACCAAACAAATACAAGAGGACGTCGACCTTGCCAGGCGCCCACG
CGAGCTTCTGGCTATCGCTCTGGCCAACAGAGTCGACAAGAGGTGGCGTC
GCCGGGCTCTTCTGGTAATGTGCATCGCACGCCACCGTAAGGGGGAGGCG
CAGCTGCTGGGTGGGGAACGCCAGCGACGACTGGGCTCGTGCGTCGGCGT
GGGTGCTCCACGCGGGGTTGGGAATGGGGATTAAATGCCCAACATGATCC
ATGTTGTTAATATGGACATCGTCGAGATAGTGGAGTTCTTGCTCAAGTCA
GGCGCAGACGAGACCGTGGTTGACAATGAAGGCAAGACAGCCATGCAGAG
ATTGAATGGAGGTATACTACATCCAAATTTACATTCTTACACCAAACAAA
TACAAGAGGACGTCGACCTTGCCAGGCGCCCACGCGAGCTTCTGGCTATC
GCTCTGGCCAACAGAGTCGACAAGAGGTGGCGTCGCCGGGCTCTTCTGGT
AATGTGCATCGCACGCCACCGTAAGGGGGAGGCGCAGCTGCTGGGTGGGG
AACGCCAGCGACGACTGGGCTCGTGCGTCGGCGTGGGTGCTCCACGCGGG
GTTGGGAATGGGGATTAA
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