mRNA_P-fluviatile_contig1.583.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.583.1
Unique NamemRNA_P-fluviatile_contig1.583.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.583.1 vs. uniprot
Match: D7G448_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G448_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.450e-29
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 GKCCPPAPLENKGVMFVVYRRLNAGRSLLLATLYDGEDTLVGLGLFFCLKYGGRYIP 171
            GK  PPAPL+NKGVMFVVYRRLNAGRSLLLATLYDGEDT VG+GL FC KYGGRYIP
Sbjct:   15 GKSFPPAPLKNKGVMFVVYRRLNAGRSLLLATLYDGEDTSVGVGLVFCSKYGGRYIP 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G448_ECTSI1.450e-2987.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6310904..6311077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815355.9866316-CDS-P-fluviatile_contig1:6310903..63110771622815355.9866316-CDS-P-fluviatile_contig1:6310903..6311077Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6310904..6311077 -
1693561580.2361643-CDS-P-fluviatile_contig1:6310903..63110771693561580.2361643-CDS-P-fluviatile_contig1:6310903..6311077Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6310904..6311077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.583.1prot_P-fluviatile_contig1.583.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6310904..6311077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.583.1

>prot_P-fluviatile_contig1.583.1 ID=prot_P-fluviatile_contig1.583.1|Name=mRNA_P-fluviatile_contig1.583.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=58bp
GKCCPPAPLENKGVMFVVYRRLNAGRSLLLATLYDGEDTLVGLGLFFCLK
YGGRYIP*
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mRNA from alignment at P-fluviatile_contig1:6310904..6311077-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.583.1 ID=mRNA_P-fluviatile_contig1.583.1|Name=mRNA_P-fluviatile_contig1.583.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=174bp|location=Sequence derived from alignment at P-fluviatile_contig1:6310904..6311077- (Porterinema fluviatile SAG_2381)
GGAAAATGTTGCCCCCCGGCTCCCCTCGAGAACAAGGGCGTGATGTTCGT
GGTGTATCGGCGCCTAAACGCCGGTCGCTCACTTTTGTTGGCCACTTTGT
ACGACGGGGAGGATACTTTGGTGGGGCTGGGCTTGTTTTTTTGTTTGAAG
TACGGAGGAAGATACATCCCTTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6310904..6311077-

>mRNA_P-fluviatile_contig1.583.1 ID=mRNA_P-fluviatile_contig1.583.1|Name=mRNA_P-fluviatile_contig1.583.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=348bp|location=Sequence derived from alignment at P-fluviatile_contig1:6310904..6311077- (Porterinema fluviatile SAG_2381)
GGAAAATGTTGCCCCCCGGCTCCCCTCGAGAACAAGGGCGTGATGTTCGT
GGTGTATCGGCGCCTAAACGCCGGTCGCTCACTTTTGTTGGCCACTTTGT
ACGACGGGGAGGATACTTTGGTGGGGCTGGGCTTGTTTTTTTGTTTGAAG
TACGGAGGAAGATACATCCCTTGAGGAAAATGTTGCCCCCCGGCTCCCCT
CGAGAACAAGGGCGTGATGTTCGTGGTGTATCGGCGCCTAAACGCCGGTC
GCTCACTTTTGTTGGCCACTTTGTACGACGGGGAGGATACTTTGGTGGGG
CTGGGCTTGTTTTTTTGTTTGAAGTACGGAGGAAGATACATCCCTTGA
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