mRNA_P-fluviatile_contig1.578.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.578.1
Unique NamemRNA_P-fluviatile_contig1.578.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6201547..6201956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size412
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.2684536-CDS-P-fluviatile_contig1:6201546..62019541622815271.2684536-CDS-P-fluviatile_contig1:6201546..6201954Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6201547..6201954 +
1693561323.421624-CDS-P-fluviatile_contig1:6201546..62019541693561323.421624-CDS-P-fluviatile_contig1:6201546..6201954Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6201547..6201954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.578.1prot_P-fluviatile_contig1.578.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6201547..6201954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.578.1

>prot_P-fluviatile_contig1.578.1 ID=prot_P-fluviatile_contig1.578.1|Name=mRNA_P-fluviatile_contig1.578.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=136bp
KIIQVCVDTENRHASSIARSVVLCYERQANSCPLSVECHEVWLPMGYHQV
CLRFLFPLQARLACLTLPRPRTLHVFHSSEISHANIAAPHEEKKDVVGRA
VESSDEPCIILFVKQPCPLLLPSFSPPQFPASSPRP
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mRNA from alignment at P-fluviatile_contig1:6201547..6201956+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.578.1 ID=mRNA_P-fluviatile_contig1.578.1|Name=mRNA_P-fluviatile_contig1.578.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=410bp|location=Sequence derived from alignment at P-fluviatile_contig1:6201547..6201956+ (Porterinema fluviatile SAG_2381)
AAGATCATCCAGGTGTGTGTGGACACCGAAAATCGGCACGCAAGCTCGAT
CGCTCGATCGGTTGTCTTGTGCTACGAGCGGCAAGCCAACTCCTGCCCTC
TCTCAGTGGAGTGCCACGAGGTTTGGTTGCCAATGGGATACCACCAGGTT
TGTTTGCGCTTTCTTTTCCCCTTGCAAGCGAGGCTTGCCTGCTTGACCTT
GCCCCGGCCACGCACTCTGCATGTTTTTCACTCTTCCGAAATCAGCCACG
CGAATATTGCAGCACCACATGAAGAAAAGAAGGACGTCGTCGGGCGAGCT
GTCGAAAGCTCAGATGAACCCTGTATTATTTTATTCGTGAAACAACCTTG
CCCTCTCCTGCTGCCCTCTTTCTCGCCACCTCAATTTCCCGCCTCCTCGC
CCCGCCCCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6201547..6201956+

>mRNA_P-fluviatile_contig1.578.1 ID=mRNA_P-fluviatile_contig1.578.1|Name=mRNA_P-fluviatile_contig1.578.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=816bp|location=Sequence derived from alignment at P-fluviatile_contig1:6201547..6201956+ (Porterinema fluviatile SAG_2381)
AAGATCATCCAGGTGTGTGTGGACACCGAAAATCGGCACGCAAGCTCGAT
CGCTCGATCGGTTGTCTTGTGCTACGAGCGGCAAGCCAACTCCTGCCCTC
TCTCAGTGGAGTGCCACGAGGTTTGGTTGCCAATGGGATACCACCAGGTT
TGTTTGCGCTTTCTTTTCCCCTTGCAAGCGAGGCTTGCCTGCTTGACCTT
GCCCCGGCCACGCACTCTGCATGTTTTTCACTCTTCCGAAATCAGCCACG
CGAATATTGCAGCACCACATGAAGAAAAGAAGGACGTCGTCGGGCGAGCT
GTCGAAAGCTCAGATGAACCCTGTATTATTTTATTCGTGAAACAACCTTG
CCCTCTCCTGCTGCCCTCTTTCTCGCCACCTCAATTTCCCGCCTCCTCGC
CCCGCCCCAAGATCATCCAGGTGTGTGTGGACACCGAAAATCGGCACGCA
AGCTCGATCGCTCGATCGGTTGTCTTGTGCTACGAGCGGCAAGCCAACTC
CTGCCCTCTCTCAGTGGAGTGCCACGAGGTTTGGTTGCCAATGGGATACC
ACCAGGTTTGTTTGCGCTTTCTTTTCCCCTTGCAAGCGAGGCTTGCCTGC
TTGACCTTGCCCCGGCCACGCACTCTGCATGTTTTTCACTCTTCCGAAAT
CAGCCACGCGAATATTGCAGCACCACATGAAGAAAAGAAGGACGTCGTCG
GGCGAGCTGTCGAAAGCTCAGATGAACCCTGTATTATTTTATTCGTGAAA
CAACCTTGCCCTCTCCTGCTGCCCTCTTTCTCGCCACCTCAATTTCCCGC
CTCCTCGCCCCGCCCC
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