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Homology
BLAST of mRNA_P-fluviatile_contig1.575.1 vs. uniprot
Match: A0A6H5L4Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y3_9PHAE) HSP 1 Score: 320 bits (819), Expect = 7.560e-103 Identity = 161/218 (73.85%), Postives = 185/218 (84.86%), Query Frame = 2
Query: 86 MRKRGADLDLPMSSGGKSPTPPRRQLTMPDATPANLLTVVWVLVSLTLLVAGWVHCSRHREESRLLCAEDVCRFYRDSPETRSAVEVQFLRESLVRADTAAINKKGELVLGKRASRREKRGMAQTYAVTWRDAETKDETTLPIAMYGLGRKAPRLKVAKIMQYVKRQVDELDVREGRRVTGLGIVCFVFGGVLLLLRVAVGSIIPQPPSRKDLSRRKL 739
MRKRG +DLPM+SGG+SPTPPRRQL MPDATPAN+ + WVL L+ G+ HCSRH E+SRL CAEDVCRF RDS E RS E QFLRESLV+A+ A ++K GELV GKRASRR+KRGMAQTY VTW+DAET+DETTLPIA YGLGRK PR KVA+IMQYV+RQ+D+LDV+EGR TG+GIVCFVFGGVL+LLRV VGSI PQPPSR+DLSRR+L
Sbjct: 1 MRKRG--VDLPMASGGRSPTPPRRQLNMPDATPANVFSFTWVLCGFALICIGYGHCSRHSEQSRLYCAEDVCRFSRDSMENRSRKEFQFLRESLVKAEVAHLDKNGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSIFPQPPSRRDLSRRQL 216
BLAST of mRNA_P-fluviatile_contig1.575.1 vs. uniprot
Match: D7FT18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT18_ECTSI) HSP 1 Score: 261 bits (666), Expect = 1.030e-80 Identity = 129/167 (77.25%), Postives = 148/167 (88.62%), Query Frame = 2
Query: 239 GWVHCSRHREESRLLCAEDVCRFYRDSPETRSAVEVQFLRESLVRADTAAINKKGELVLGKRASRREKRGMAQTYAVTWRDAETKDETTLPIAMYGLGRKAPRLKVAKIMQYVKRQVDELDVREGRRVTGLGIVCFVFGGVLLLLRVAVGSIIPQPPSRKDLSRRKL 739
G+ HCSRH E+SRL CAEDVCRF RDS E RS +E QFLRESLV+A+ A ++KKGELV GKRASRR+KRGMAQTY VTW+DAET+DETTLPIA YGLGRK PR KVA+IMQYV+RQ+D+LDV+EGR TG+GIVCFVFGGVL+LLRV VGSI PQPPSR+DLSRR+L
Sbjct: 2 GYGHCSRHSEQSRLYCAEDVCRFSRDSTENRSRIEFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSIFPQPPSRRDLSRRQL 168
BLAST of mRNA_P-fluviatile_contig1.575.1 vs. uniprot
Match: A0A835YLB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB3_9STRA) HSP 1 Score: 107 bits (266), Expect = 7.820e-23 Identity = 65/178 (36.52%), Postives = 105/178 (58.99%), Query Frame = 2
Query: 167 MPDATPANLLTVVWVLVSLTLLVAGWVHCSRHREESRLLCAEDVCRFYRDSPETRSAV--EVQFLRESLVRADTAAINKKGELVLGKRASRREKRGMAQTYAVTWRDAETKDETTLPIAMYGLGRKAPRLKVAKIMQYVKRQVDELDVREGRRVTGLGIVCFVFGGVLLLLRVAVGSI 694
+P TP LL+ W L L L V G++ C + E SR+ C C + AV E F R +L+ A+ + + GE+V SR+++R A +YA+ W DA+ + P++ GLGR+ PR +V +IM+Y+KR++ E+DV + R +G+G++C +FG +LLL+R AVG++
Sbjct: 4 LPKVTPLKLLSWCWTLFGLFLSVFGFLKCRSNSESSRIACDSTDCVV---TMVRGGAVIEETAFPRVNLMSAELVRLYQ-GEIVDPTSLSRQKRRTTASSYAIKWLDAQRQTHMR-PMSSRGLGRQVPRSRVQEIMKYIKREIHEVDVSQARYTSGVGLICCIFGVLLLLMRAAVGNL 176
BLAST of mRNA_P-fluviatile_contig1.575.1 vs. uniprot
Match: A0A482SAI2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAI2_9ARCH) HSP 1 Score: 57.0 bits (136), Expect = 9.220e-6 Identity = 42/180 (23.33%), Postives = 81/180 (45.00%), Query Frame = 2
Query: 200 VVWVLVSLTLLVAGWVHCSRHREESRLLCAEDVCRFYRDSPETRSAVEVQFLRESLVRADTAAINKKGELVLGKRASRREKRGMAQTYAVTWR-------DAETKDETTLPIAMYGLGRKAPRLKVAKIMQYVKR-QVDELDVREGRRVTGLGIVCFVFGGVLLLLRVAVGSIIPQPPSR 715
++W L+SL L+V G++HC + L C C + S S + F + L+ A+ I++ G V +R +++ + Y++ + ++ K + A Y + R+ + V +I ++ + D + +GR +T +G++C G V L+ GS I P R
Sbjct: 1 MIWALLSLALIVVGYLHCRSNAFSYNLDCRASQCTW---STTNSSVATLNFPKADLLDAEVVRIDRNGVFV---DPTRTKEKNLKYGYSIRLKLRLPVEEGSKLKVDKDFIFAPYDISRRTAKAAVTRIRAFLDNTKSDSFNYSKGRSITSIGVLCMFVGVVSTLMACMFGSWIEAAPRR 174
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-04_002430.1 |
| Exons | 3 |
| Model size | 1850 |
| Cds size | 666 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815354.6179073-UTR-P-fluviatile_contig1:6185541..6186640 | 1622815354.6179073-UTR-P-fluviatile_contig1:6185541..6186640 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 6185542..6186640 - |
| 1693561574.8387253-UTR-P-fluviatile_contig1:6185541..6186640 | 1693561574.8387253-UTR-P-fluviatile_contig1:6185541..6186640 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 6185542..6186640 - |
| 1622815354.6616895-UTR-P-fluviatile_contig1:6189363..6189448 | 1622815354.6616895-UTR-P-fluviatile_contig1:6189363..6189448 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 6189364..6189448 - |
| 1693561574.8745458-UTR-P-fluviatile_contig1:6189363..6189448 | 1693561574.8745458-UTR-P-fluviatile_contig1:6189363..6189448 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 6189364..6189448 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815354.629357-CDS-P-fluviatile_contig1:6186640..6186853 | 1622815354.629357-CDS-P-fluviatile_contig1:6186640..6186853 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6186641..6186853 - |
| 1693561574.846574-CDS-P-fluviatile_contig1:6186640..6186853 | 1693561574.846574-CDS-P-fluviatile_contig1:6186640..6186853 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6186641..6186853 - |
| 1622815354.6405566-CDS-P-fluviatile_contig1:6187572..6187777 | 1622815354.6405566-CDS-P-fluviatile_contig1:6187572..6187777 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6187573..6187777 - |
| 1693561574.8550873-CDS-P-fluviatile_contig1:6187572..6187777 | 1693561574.8550873-CDS-P-fluviatile_contig1:6187572..6187777 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6187573..6187777 - |
| 1622815354.6514885-CDS-P-fluviatile_contig1:6189115..6189363 | 1622815354.6514885-CDS-P-fluviatile_contig1:6189115..6189363 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6189116..6189363 - |
| 1693561574.8645196-CDS-P-fluviatile_contig1:6189115..6189363 | 1693561574.8645196-CDS-P-fluviatile_contig1:6189115..6189363 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6189116..6189363 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.575.1 >prot_P-fluviatile_contig1.575.1 ID=prot_P-fluviatile_contig1.575.1|Name=mRNA_P-fluviatile_contig1.575.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=222bp
MRKRGADLDLPMSSGGKSPTPPRRQLTMPDATPANLLTVVWVLVSLTLLV AGWVHCSRHREESRLLCAEDVCRFYRDSPETRSAVEVQFLRESLVRADTA AINKKGELVLGKRASRREKRGMAQTYAVTWRDAETKDETTLPIAMYGLGR KAPRLKVAKIMQYVKRQVDELDVREGRRVTGLGIVCFVFGGVLLLLRVAV GSIIPQPPSRKDLSRRKLSYK* back to topmRNA from alignment at P-fluviatile_contig1:6185542..6189448- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig1.575.1 ID=mRNA_P-fluviatile_contig1.575.1|Name=mRNA_P-fluviatile_contig1.575.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3907bp|location=Sequence derived from alignment at P-fluviatile_contig1:6185542..6189448- (Porterinema fluviatile SAG_2381) ACGGTGCACTGAGCACCGGCGCCGGCGGCGACAAACACGACACGCGACAC
AAAACACTGCGGTGTGCACAAACGCTGTCAACGCGATGAGAAAGCGAGGG
GCAGACTTGGACCTGCCGATGTCGAGTGGAGGAAAATCACCGACGCCTCC
CCGTCGCCAGTTGACGATGCCAGACGCCACGCCAGCGAATTTGTTGACCG
TCGTGTGGGTCCTTGTTTCACTGACTCTGCTTGTTGCGGGCTGGGTGCAC
TGCTCGCGCCATAGGGAGGAGTCGCGCTTGCTCTGCGCCGAAGACGTGTG
CCGGTTCTACAGAGATTCCCCGGAGACAAGAAGGTGTGAACTTTGCTTCT
GAGGACATCGACCATCTCCTTCATGCGTGCAGAAGGCTGCAGTATGTCCC
TGGTCGCATATTGTTCCAACTGCCACTCTCCGTCTTCTGTATGGCCATCA
CCTTACACCATGACGGCACTGCCGCGCGAACCCTGTCGCTGCTGTGCAGA
CTGCTGTTCAGCAGAATTTGTCGAAGACAATATTCGTGCGCGCAAAGATT
GCATCCTGACTTGCCAAGTTCGTTTTTCTTCGGACGCAAAAAACATTTCC
CCTGAGTGCACAGCAGTGTTCCCCGGCGATTGCACCGCAGAGCCGCACAG
CTGCAGTACTCTCTCGACACCCTTAGCGACGCACCTTCCCTACCTCAACT
TCGATCGTGAGCCCGGGTATCAATGGTGGGTTTACTCATGCTCCGCGGCA
TCTCTGGCGTCTCCGCGTCGTGCACGGAGAAATGTGTAAAGCATGTATCT
TGCCATCTTCTGGCCTTGTCGATCCCGAAGGGAGAAAGGCTGGAAAGGGA
GGCGAGGGAATATCGTTGGTGGTCGCTCCCAAAGCCAAGAAAACATATGC
GCCCCTTTCTCTTGCCTTAGGTGTTTCGGAGATATTGTCGCGATGCTTGA
GAGGGGTAGCACGGATGTTTGTATGCCATTGCCACATGGGGCAGATGACT
GTTGACGGTTGTGACTCGAAACGGACAGCGTCAGATGCATACCCAATGTG
CAGTTCTTTCTAATTTCAGTTGGAGTTTTGAGCGTAATCGTGACGCCTCG
GGGTTGGGCGTACAGCGTTGTCATGCGTTTATCCTTCCTCTCAAAGTCCT
GGGTCTATCTACCTACGGACGAACAGCCCGCTTGTTGACCCCCCCCCACC
TGCACCGCACGGAAACAATGGCACCATGACAACAGGCAGCTAAACACTTC
ACATTCGTACAGCTCAAGAGGCGAGCGAGGGCTAGAGAGGCTATCCGCAA
GCGGTTTAGTGTGGCTCGGGAGCTGTAGCTTTTCCTCACCGGGGGGAATT
TGTGTTCAATTTACTTCCGATATTGTTTTGTGGATTGACCTGCGTTTCGT
CGTAGGCGACACGTTATGTCGAGGGGCACGCGTACCCAACCGTGGTGAAC
CATGCCTGCGCCAACTCACGCAGGAAGCGTGAGCGCGTCTTGCAGTGAGA
TGCCCCTTCCCGTCTCACCCTCTTCTTTTGCCCTTCCGTGCTCCCACCGA
TTCCAAGTCATCCTTCACCCGCTCTGCCTATTTTTCTGCGTCGAGTTGAT
GAACACAAACGCCAAGCTCGTGACATGCCACCAATTGTACCCCTTCAAAA
CGTACAAAACGGATACGACAGCGCCGTGGAGGTTCAGTTTCTCCGGGAAA
GCTTGGTCAGGGCCGACACGGCGGCGATCAACAAGAAGGGCGAGCTCGTG
CTGGGGAAGCGCGCGAGCCGTCGGGAAAAGAGAGGGATGGCCCAGACGTA
CGCCGTCACTTGGAGGGACGCCGAGACGAAGGACGAAACTACGCTCCCCA
TCGCCATGTACGGGCTGGGCCGAAAGGTGCGGGTGGGAGGGGCGGGCCCG
CTTCGGCTGTGTGTGACATGGGTTCCGCGTGAACTTCGTTGTGTGCCTTT
CTTTGCGTGTGGTGCCTCGCCACGACGAAGTTCTGTTGCCTGCGAAACCG
GTTGCGCGTGTCTTGTCTGCTGCTTCTGTCTTCTCTGTTGCGACTTTCGC
TCCGTGTGAGTTCGATTGCGTGCGGCTTTGTTGTGTTGTGTGAAAGTATT
GGCTCGGAGAAAAGCAGCGACCGCTCAGCAGACTGTCTTGTCCAAGTACG
TGTGCATGCAGCCTCCGAGGCACAATAGTGGTGTGCACAACGCAGGCAGG
GTGGCTGGGTGGGTTGTGAGTCAACTGCCCGCGCGGTCCAGCTCAGTGGC
TGTTTTTTTCGACGTGGGGGGGTAAATTTGTAGCAGGAGGACCAGCTGCT
CTATCTCTATTGGTACCCGTGTCTCTCTTCCTCTTCCTCTTCTCTGTCTT
CGTCGCTATTTCCCTCTACGTCTGGAACAGTCACAAGAAAATTGCAAACA
TGATACTCGTCGCGGGGAAAGCAGAGGCTCGAGGCAGGATGCGTCTTCGG
CTTCATTTGAGAACCGGAGCAAAACTTGATGAATGCGCCGGCCTGGTTCC
CTGATGGTGATGCTTCCTGCGACCGACACGATCGATCCAATCCTCCCTCA
TCGCCCCTTTCATTCGCGATCATCGGTGGTCTTTCCTCCCCCCAGGCGCC
CCGCCTTAAGGTTGCGAAGATCATGCAGTACGTGAAGCGGCAGGTGGACG
AGCTCGACGTGAGGGAAGGGCGCCGGGTCACCGGCCTCGGAATCGTCTGC
TTCGTCTTCGGGGGCGTCTTGCTCCTCCTGCGGGTTGCAGTCGGCTCGAT
CATCCCGCAACCGCCGTCGCGGAAGGACCTCTCGCGGAGGAAGTTGTCAT
ACAAGTAGTTTTTTTTTGAGATGCAGTGGAAGCGGACTAATCGTAACCCC
TGCTTCAGGAAAAAAAGGGGTGTCCTTTCAGCAGGGAGTGTTCTTCATTT
TTTCGTGTCCTTAAAGCGCGGACGACTGCACTTCGAGTCAAGTCAAGAGG
CGACATGCCTCGAGTCGAGAGGCGCTCATAAGTAGACCTGGTCGACGGAT
GCTGGAGGAGAGGGGGCTCGATAGGTGGGTTCGCAGGGGGCAGGTTTTGG
CGTGCTTGCCGTCGTTCGGCCTGTTTTGGTATACACCTCCCTCCAAACGT
GCGCTTTTGGTTCTTAAAGCGGGTTGGTGTTTCCACGCACGTGTCGGCCG
GAGTTGTGAAGCGCAACATTTTTTTTTACTACGCGTTCCGGGTCCTCCGA
TTCAGGTCCGCCACCTCGGTTCTGCGCACCCCCGCGCAGTTAGCGCGGGA
GGGAGAAGGCACATTCTCCCACCCGTGAACAAGGCGCTTGGCGACCTGCC
CTAATTACTATCAGCACCTTTTGCGCGACTTTTCTTGCCTAAATGAGCGC
CCACGGAGGGTTCGAGCCGTCTGTGTTGAACGCGTGCATGTGTTGAGTGT
TTCCCCGGGATTTTTTCTTTTTTGTGGGGCATCTGAGAGCTGCGCTGCGC
AAGGCTGGTGCACAGGTTTACCACTGATTGCGCGAAACTACAGACGCCGA
CGGAACGGCTGTACGGATGGCTACTGTGTGCTGCGAATGACTTTTTTACT
ACTGCTGTGTTCCGTGCGAACTCTTACATATTTTTGGGCGTTTGGGTGTG
TGTTTTACGCAGGAGCGGGGGCGGGGGCGCCCTGTTGTTGATGTGTGTTT
TCATGCCCGTGATATTCGTTTAGACGAGTTTATCTTGACGCGTGACGTCA
CTTTGGCAGGCCCTCCCTTCTTCTCTCGACCACGATTTCGCTTGCCGTAC
GGCACAAGTGGTGCGCTAAAGTGAATACTAGCATGCTGGAAGCTTCGCAG
TCAATGTTACAACGACGATAAGCAAGGCATGACGAATTTGACCAAAAATC
GTTTTTGCCCACCGGGGCTGCTGGGAAGGACGTCGATTAGACATTATCCG
GGGAGAG back to topCoding sequence (CDS) from alignment at P-fluviatile_contig1:6185542..6189448- >mRNA_P-fluviatile_contig1.575.1 ID=mRNA_P-fluviatile_contig1.575.1|Name=mRNA_P-fluviatile_contig1.575.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1332bp|location=Sequence derived from alignment at P-fluviatile_contig1:6185542..6189448- (Porterinema fluviatile SAG_2381) ATGAGAAAGCGAGGGGCAGACTTGGACCTGCCGATGTCGAGTGGAGGAAA ATCACCGACGCCTCCCCGTCGCCAGTTGACGATGCCAGACGCCACGCCAG CGAATTTGTTGACCGTCGTGTGGGTCCTTGTTTCACTGACTCTGCTTGTT GCGGGCTGGGTGCACTGCTCGCGCCATAGGGAGGAGTCGCGCTTGCTCTG CGCCGAAGACGTGTGCCGGTTCTACAGAGATTCCCCGGAGACAAGAAGAT GAGAAAGCGAGGGGCAGACTTGGACCTGCCGATGTCGAGTGGAGGAAAAT CACCGACGCCTCCCCGTCGCCAGTTGACGATGCCAGACGCCACGCCAGCG AATTTGTTGACCGTCGTGTGGGTCCTTGTTTCACTGACTCTGCTTGTTGC GGGCTGGGTGCACTGCTCGCGCCATAGGGAGGAGTCGCGCTTGCTCTGCG CCGAAGACGTGTGCCGGTTCTACAGAGATTCCCCGGAGACAAGAAGCGCC GTGGAGGTTCAGTTTCTCCGGGAAAGCTTGGTCAGGGCCGACACGGCGGC GATCAACAAGAAGGGCGAGCTCGTGCTGGGGAAGCGCGCGAGCCGTCGGG AAAAGAGAGGGATGGCCCAGACGTACGCCGTCACTTGGAGGGACGCCGAG ACGAAGGACGAAACTACGCTCCCCATCGCCATGTACGGGCTGGGCCGAAA GCGCCGTGGAGGTTCAGTTTCTCCGGGAAAGCTTGGTCAGGGCCGACACG GCGGCGATCAACAAGAAGGGCGAGCTCGTGCTGGGGAAGCGCGCGAGCCG TCGGGAAAAGAGAGGGATGGCCCAGACGTACGCCGTCACTTGGAGGGACG CCGAGACGAAGGACGAAACTACGCTCCCCATCGCCATGTACGGGCTGGGC CGAAAGGCGCCCCGCCTTAAGGTTGCGAAGATCATGCAGTACGTGAAGCG GCAGGTGGACGAGCTCGACGTGAGGGAAGGGCGCCGGGTCACCGGCCTCG GAATCGTCTGCTTCGTCTTCGGGGGCGTCTTGCTCCTCCTGCGGGTTGCA GTCGGCTCGATCATCCCGCAACCGCCGTCGCGGAAGGACCTCTCGCGGAG GAAGTTGTCATACAAGTAGGCGCCCCGCCTTAAGGTTGCGAAGATCATGC AGTACGTGAAGCGGCAGGTGGACGAGCTCGACGTGAGGGAAGGGCGCCGG GTCACCGGCCTCGGAATCGTCTGCTTCGTCTTCGGGGGCGTCTTGCTCCT CCTGCGGGTTGCAGTCGGCTCGATCATCCCGCAACCGCCGTCGCGGAAGG ACCTCTCGCGGAGGAAGTTGTCATACAAGTAG back to top
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