mRNA_P-fluviatile_contig1.573.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.573.1
Unique NamemRNA_P-fluviatile_contig1.573.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.573.1 vs. uniprot
Match: D7G503_ECTSI (Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G503_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.830e-8
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1 
Query: 2779 FFHRYHELVPRMVPGYENRILLLHELNHFLNLFLQCGREFRGIYMAVVSLLLDP 2940
            FF +YH+L+PR  PGY++RILL ++L H+LNL+LQ GR+FR   MA+V  LL P
Sbjct:  146 FFVKYHDLLPREEPGYQDRILL-YQLYHYLNLYLQHGRDFRSPCMALVKTLLAP 198
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BLAST of mRNA_P-fluviatile_contig1.573.1 vs. uniprot
Match: A0A6H5L5M7_9PHAE (Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.730e-7
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query: 2779 FFHRYHELVPRMVPGYENRILLLHELNHFLNLFLQCGREFRGIYMAVVSLLLDP 2940
            FF RYH+L+PR  PGY++RI+L ++L H+LNL+LQ GR FR   MA+V  LL P
Sbjct:  204 FFVRYHDLLPREEPGYQDRIML-YQLYHYLNLYLQHGRGFRSPCMALVKTLLAP 256
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G503_ECTSI2.830e-857.41Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5L5M7_9PHAE1.730e-757.41Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6156290..6161310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue1e-08
Seed eggNOG ortholog2880.D7G503
KEGG rclassRC00002,RC00078
KEGG koko:K00921,ko:K15523
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
EggNOG free text desc.protein-ribulosamine 3-kinase activity
EggNOG OGsCOG3001@1,KOG3021@2759
EC2.7.1.150,2.7.1.172
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-04_002400.1
Exons3
Model size4380
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.573.1prot_P-fluviatile_contig1.573.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6157688..6158578 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815354.3616402-UTR-P-fluviatile_contig1:6156289..61576871622815354.3616402-UTR-P-fluviatile_contig1:6156289..6157687Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6156290..6157687 -
1693561574.6765938-UTR-P-fluviatile_contig1:6156289..61576871693561574.6765938-UTR-P-fluviatile_contig1:6156289..6157687Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6156290..6157687 -
1622815354.3942957-UTR-P-fluviatile_contig1:6158578..61604921622815354.3942957-UTR-P-fluviatile_contig1:6158578..6160492Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6158579..6160492 -
1693561574.7093742-UTR-P-fluviatile_contig1:6158578..61604921693561574.7093742-UTR-P-fluviatile_contig1:6158578..6160492Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6158579..6160492 -
1622815354.4115365-UTR-P-fluviatile_contig1:6160557..61613101622815354.4115365-UTR-P-fluviatile_contig1:6160557..6161310Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6160558..6161310 -
1693561574.7172759-UTR-P-fluviatile_contig1:6160557..61613101693561574.7172759-UTR-P-fluviatile_contig1:6160557..6161310Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6160558..6161310 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815354.3728852-CDS-P-fluviatile_contig1:6157687..61578921622815354.3728852-CDS-P-fluviatile_contig1:6157687..6157892Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6157688..6157892 -
1693561574.68849-CDS-P-fluviatile_contig1:6157687..61578921693561574.68849-CDS-P-fluviatile_contig1:6157687..6157892Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6157688..6157892 -
1622815354.3829358-CDS-P-fluviatile_contig1:6158468..61585781622815354.3829358-CDS-P-fluviatile_contig1:6158468..6158578Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6158469..6158578 -
1693561574.6989884-CDS-P-fluviatile_contig1:6158468..61585781693561574.6989884-CDS-P-fluviatile_contig1:6158468..6158578Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6158469..6158578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.573.1

>prot_P-fluviatile_contig1.573.1 ID=prot_P-fluviatile_contig1.573.1|Name=mRNA_P-fluviatile_contig1.573.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=105bp
MEATRTASFIFSRRRHERPVNAVASSSTWKWNVFTRLFFHRYHELVPRMV
PGYENRILLLHELNHFLNLFLQCGREFRGIYMAVVSLLLDPRDGTERSDD
EDNG*
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mRNA from alignment at P-fluviatile_contig1:6156290..6161310-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.573.1 ID=mRNA_P-fluviatile_contig1.573.1|Name=mRNA_P-fluviatile_contig1.573.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5021bp|location=Sequence derived from alignment at P-fluviatile_contig1:6156290..6161310- (Porterinema fluviatile SAG_2381)
AGAGAGGGCGGGGGGCGAAAGAATGAGAAAGGCGAGAGACCTTATTTCGC
ACACCAGAGAGAGGAACGATCTGGCAGGTGCGGAAGAAAACCAGAGGCAC
TCGTAATTTTTGAGGGAGCATGACTCCCAACACACACACACACACATTTG
TGTTGGCCGCCTGCCTGTGTGTGTGTTCATGTGTTGTGTGTGCGCCGGTA
GAATCATGATGAGAATAAATCACGGTGCCCGGGCACGCGGCAAGCGTGAA
TATGAAGAATGTGGTGAGGAAAGACAACACGTGGCGCGATGCTCAGGTGC
TCGCTGTGCAGGTGCCCAAAGCTGCGTCTCCGTCGGCCGTTGGGAGTCAG
ATCTAACCTCGCCCTTGCCTCCCGCTGCTGTCGGTTTGCAAATGTGTGCG
GTAGCGTAAAGGCATGCAGTTGTTGAGATGAATGTGCTTCTATGAGCAGA
GGCACGGCCCATTTTTCTTGCAAACCTCGACGTCGTGATCCGTCGCGTTA
CATGGAATCAGCAATGAGCAATAGGCGATCCGTTTTCCTTCCTTTCCACA
CGAGAAAGTAGATTTCCCATCTGCCCGCTCGTCTGAGGTCTGCGGTCTAT
AGAAGCTGAAAATCTATGAGGCGGCCTTTTTTTCCTGCGGGAAAAGGAAG
TGAAAATAACCCTGGGCGGACGGATAGTAGCGGCTGGCAAGGGGAGCGCC
ACCCTCCTCGGAAGTGCAGTGCAAGGGGAACCCGGACCCCGTGACTTTCT
TTTGTAGAAGCTGAAAATCAACCCTCTAGACCAGTCAGCGCTGACTAGTC
TAGAGGGTTGATTTTCAGCTAATTAGGTCTGCGGTCTGCGGGCCATGGCA
GCTAGCGCCCTAATTAGCTGCAGCGCACATACACGGGCCTTGTTTGCCAA
AGGTAAGGCCCATCACGAAAGTATGGCAGGATCGTCCATCTTTTCCCACA
AATAACTGTTTCTTTCCCAATCTTCATTCGATCCTGGAGGGAGTGGAACC
GCTCTACTCTCGGTTCTCCATCGATAGCCTGAACCACCGGGTTCTCGAAT
TGGAGTACAGCTTCCTTCCAGAACAGGACGCGTAGTCTCGCCTGTGGTCT
AGTCGTCAAACTGCAAACCACACGTCACCCTCGAGTGTGCAATCTGCGAA
GTTCTAGGGGAAGTGAACTTTTCCAGAGGTTTCAGTGGCAGGGACGCCCA
TTGTCACTTCAGTCAGTTCGTGCGCGAACATGCTTGGGGACTCTTCCTCA
GGAATGTAGTGCCCAGCCGAATACACCTCGAGCGCTCAACAACTGACTCC
GTGTATGGGTCCCCCCCCTCCCTCGGCTAGTTTACGTGCTCCATTGCGCC
TGCGACAGCCAAAAACAGAGGCAGTTTAGATCGGCAGTATTACCGGAGGG
AGGGATGCAGGACAGACATACGGGCAGGCAGAGAGGCAGGTAGATGACAG
GGAGACATAGAGATAGACCGACGGGTAGACAGGCAGATGGGCAGACGGAA
AGACGGACAGAAGAGTGAGTGCGTGTGTCAGAGAGATGGGACGAACTACA
GAGAAGAAGGGGGGGGGGTTGAGGGGCAGAGAATCAGATCGACCGACAGA
CAACAGACAGGTAGACAGACCGACAGTCAGGCAGACGACAGACCAAGAGC
CAGATAAAGAGAGAGAGACAGAGACAGAGACATAAGCAAGAAGAAGATAG
GGACACACAAGGAAGCAATCAGACAGATGATAGACCGACAGACAGATACA
TTAGCAGACAGACAGACACAAAGACATGCAGGCAGGCAAATATACATACA
CACGCAAGCAGGCCACCGCCAACCGGGTCAAAATAGAGAGACTGTCATGG
ACCGACTCACGCCCAGGGAGCCGAGAGAGAGAGGGCAAGGGCGTGATGGT
AAACATGTCGGTTTGGGGAACTAAACTAGTCGCACACCCGAAACAAGTCT
GTTGACGTCAAAAATTACCCCCCCCGCGTGTGCCGATCCCCCCTCCCGCG
ACCAGGGGCACCGTACCTGTCTACCACCCTCCCTCTCGAGAGTCACACAG
CAGTAGAGGGCCAATAGAGCGAAAACGCGAGAGACAGAGAATCGTCATAA
AAAGAATATGTCCGACAACAGCACCGCCGTCCTCGAGAGCGATCGAATTT
CGGCCCAGCAGAGTCATCTCGGGTGCGGCGTTCGCCGCCACAGGGACGAG
GGTCGTGGCATTCGCCATCGTCGGATCCGCCGGGAAATCGAAGGTATGAT
AAGACGACAAGGCCAAGTTTATATGCATGCATTTGAATCGATAATTCGCT
TCTTTGTTTCGCGTGCATGTTGAAGCAGTACTTTTGGTAGATTTGCGTAG
CTGCCCGCTCCTGTTCGTCAAGATGATCCGCCACGAGCGACGCGCGCGCC
AAGCGCTCCACCAAGAATACCCGCTTGGAAGCGAACAAGAACGCGGTGAT
GCACTACTCTTTTCGTGACATGGCGGGTCAGTCCGACGTGACTAGAGGAT
TGACTCAGAGGATCAGGGGATCGACTCATAAGTTCCGCCTGTTCTCTAAT
CAGCGAGCGGCTGAGGATGCACTAGCCAGCTGATTAGACGAGAAGACCCA
GCGGCACCACCCTGCTTAGCTCCCGCGGCGAGGACTTCCCAGCCTCGTGT
TTCACGTGTCGAAGGACACGCAGCCAAGGCTTTCAGCATCTTATAATGCT
CCGCTTGGTTTGTGAGCTCTGTGGTGGACTACATGGAAGCTACTCGGACG
GCTTCCTTCATTTTCTCGAGACGAAGACATGAACGACCAGTGAACGCCGT
AGCATCATCATCGACTTGGAAGTGGAATGTCTTCACTCGATTGTGAGGAG
AGGAGCCCCTTTTGGTGGAGGCGCGCGTACACACGAAAGCTGCTGCTGTT
GCGGCGTATCAGAAAGGCTGTACCCATCGCGAATAAAATCAAATCGTGTT
GGAGCCGTGTGCATCAGTTGCGAGGAAATGACAAGAGCATGTCGTCAGAA
GGGTTGCACTCCACAGTGGAAGGAATGAACGAAGTCAATGAGTCCAAACG
TGTGTAGCCGCGAGGGACGGGCGCGAGTAAGCCTTGATTCGACGTATGAA
GAAGCTGTTTCGGCCTAGTTGGCGGCGCTTTGCGAGCGGGGGCGCAAGCA
ACAGTCGTGGTCCCCCGTCCGTGCTGCTCGCGGGCTAGGCTTATCAACCT
CGATTGTGCAGAAGCAGAGACAACCAATTCTTATGAAATCCTTGGCAAGG
ACGCAAGGAATACACTGAGCGGCGCGTCTGCGTATTTGAGTTCAATACTA
GACTCGGCACCTCAGAGTGTGTCAAAAACGGAAGGAGTGTGGCCAACGGC
CAAGTGACTCCACGGCACATACCGCAGAGCCCCCCCACGCGCACCCTGTT
CGCTCGCCAACTTTTCAGGTTTTTTCATCGGTACCACGAGCTAGTGCCCA
GAATGGTGCCGGGCTACGAAAACAGAATTCTTCTCCTCCACGAGCTGAAT
CACTTCCTCAACCTCTTTCTGCAGTGCGGCCGAGAATTCCGAGGCATCTA
CATGGCGGTAGTCAGCCTGCTGCTGGACCCCCGCGACGGAACTGAACGCA
GCGACGATGAAGACAACGGGTAATGGAAGAAGGAACGAATCTAGGTTCAA
TACCTTCGGAGCCAGCGTGCTAGGTGAAAATACCTGTCTTTGTGCAAACA
GGACTTTGGAGCGATGCTCAGGGGTCGACAGCCTCCGAACTAATTAGCTA
GCTGAGACCTCAGAGTTGTGGTTGCAAGAAATCCTTGGAAGCGAAACCCG
GTATCAGCACCGCGCCTGTGCCGCGAGTGCGTTTTGTCGCCGCCGAATGG
CCTTCAGACTTAATTCTTGCGCATCGGATACTCGTCCGGCGGGAATCCTC
GAAGAGTTTTGCACCTGTGTGTGGTGACCCTGCTGGATGTTCTGCTGCTG
GTAGGGGTGAGCAGAGAAAGGAAAAGGCGCTTCACCGGTGCGGGGCGATG
ACGCGAGAGAGAGACAAAGTTTCCCACGTTATTTTTGGCGTGTTGGATGA
TTTTCTGCCGCACCGGCTGGGAAGGGAGGAGAGAGGCGGATCGGGCACTT
AATAATAGAAGGGAGAAACCAACTCTGATTTCGTCTGCGTGGGATCCTAG
ACAAGCGCGAATCAAGTTCGACGTTGTTGAGGATCTGAGTTTTTACCGTT
CGGAAGATCAATGATGAAAACTCCGATGTAAAGTGATGTGTGTATGTGTG
CGTATTTTCGTCATCTGTGTCCGTTTTTTTGTTTGTTCTTCGGTTGTTGG
TCATTTTGGTCTGTGTGCTTGTGTAAAGTTCCTCGCTCTTTGTTTCGCTC
GTATGGGAGCTAAAAGTTCCATGAGCCTCTTACTGCGATGTCCCTGGTAC
AAGGGATGGCGCTGGCGTTGGTCTTGACGTATTTCATTCAAACTGTAGTG
ATTGGAGTATTTCATTATCGCTCCGCTCCTGATTGATTTGCCATGTTTTC
GTGTACCAGGCACAATATCAATCTGCTTGGAAATCTACAATAAATCGCCA
TCAAATCATTTTTTTATTATCGTTTTCTTCCCCTCGGTTGCGGGGATATC
GTGTGTGTCTTCTAAAAGTTCTACGCGAGGTGTCAGGGCAGGAACACGGA
ACGAGGCGTTTCTGTCTGTTCTTTATTTTTGTCGTGTGTGGGCGTGTTCG
GATGGGAGATGTCGACCACGCATGTTTAAGCTCGTATGCCGTGTGTTTGA
TTGTGTGTCCGCGCAGTAATGCTTGTAGCACTTTACCGGCTTCCCGCCTG
CCATGGTTTGCGTGCACAAGCGTTTGCACCTCAGACAGCGCCGGGTCATC
ACATGCGGGAAAATCTAGGGGCACGCAGGAAGTTGTGCTTTGGGATTCTG
ATTGAGGAATGACGCGTACACGGCTGGTGCGCCCTGCATGCGCGTCGAAG
AGTAAAACAAACCAGTGTTTTTCTCGTTCGGGCAAGATGAAATTAACAAA
GATCTAGAACTTTTTCCTGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6156290..6161310-

>mRNA_P-fluviatile_contig1.573.1 ID=mRNA_P-fluviatile_contig1.573.1|Name=mRNA_P-fluviatile_contig1.573.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=630bp|location=Sequence derived from alignment at P-fluviatile_contig1:6156290..6161310- (Porterinema fluviatile SAG_2381)
ATGGAAGCTACTCGGACGGCTTCCTTCATTTTCTCGAGACGAAGACATGA
ACGACCAGTGAACGCCGTAGCATCATCATCGACTTGGAAGTGGAATGTCT
TCACTCGATTATGGAAGCTACTCGGACGGCTTCCTTCATTTTCTCGAGAC
GAAGACATGAACGACCAGTGAACGCCGTAGCATCATCATCGACTTGGAAG
TGGAATGTCTTCACTCGATTGTTTTTTCATCGGTACCACGAGCTAGTGCC
CAGAATGGTGCCGGGCTACGAAAACAGAATTCTTCTCCTCCACGAGCTGA
ATCACTTCCTCAACCTCTTTCTGCAGTGCGGCCGAGAATTCCGAGGCATC
TACATGGCGGTAGTCAGCCTGCTGCTGGACCCCCGCGACGGAACTGAACG
CAGCGACGATGAAGACAACGGGTAAGTTTTTTCATCGGTACCACGAGCTA
GTGCCCAGAATGGTGCCGGGCTACGAAAACAGAATTCTTCTCCTCCACGA
GCTGAATCACTTCCTCAACCTCTTTCTGCAGTGCGGCCGAGAATTCCGAG
GCATCTACATGGCGGTAGTCAGCCTGCTGCTGGACCCCCGCGACGGAACT
GAACGCAGCGACGATGAAGACAACGGGTAA
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