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Homology
BLAST of mRNA_P-fluviatile_contig1.572.1 vs. uniprot
Match: D7G502_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G502_ECTSI) HSP 1 Score: 314 bits (805), Expect = 8.390e-97 Identity = 200/354 (56.50%), Postives = 230/354 (64.97%), Query Frame = 2
Query: 221 AALVIGRSQGFLGGSLPGLSTTSKSAAHQPRCRIVRLALTPPPXXXXXXXXXXXXXNRKT---------STRRITRAPLRITPNFQPQEKRRPKTEVHRDITYGAFLTEESFDIAAMAWEEFSDFLRRTIERNVNGAQFEFDIRQWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDTWGNQAAKVDARVEDEWDSIYVDFQEISLDDNASGFGSTNKLEAEDGGYGSRSDGMM---AMGRDLRGANIPGSATTAMRAVATTTATGPQPRREGGRWRATNSDIGSTRSGGSRSALMAALDAFNAEDEEDGXXDGKDEEGGAEGKGFDEDEIIDCAIRGRWRFENNDDPPHF 1246
A L +G +QGF+ SLP L T + RCR+ RLALTPP ST ITRAPLRITPNFQPQEKRRPK V +D+TYGAFLTEESFDIAAMAWEEFSDFLRRT+ERN+NGAQF+FD RQWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRD GNQA KVDARVEDEWDSIYVD Q+++ ++ +D + S G + A G D+ G S++ A+ + R+EGG W A+ GS +GGSRSALMAA+DAF EE XX E G+EG FD++EIIDCAIRGRW F NNDDP F
Sbjct: 9 ALLFLGGAQGFIT-SLPRLPTRDITPTPG-RCRVPRLALTPPRKPNTGAGAGSAAAGGDDNGGANDVLKSTSGITRAPLRITPNFQPQEKRRPKFNVDKDVTYGAFLTEESFDIAAMAWEEFSDFLRRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDARGNQALKVDARVEDEWDSIYVDCQDVA------------DVDFQDWSFDSSISGGVEGAATGSDVTGWRSSESSSEALPSSL---------RKEGGGWGASP---GSASTGGSRSALMAAMDAFQ---EEXXXXXXXXEGTGSEG--FDDEEIIDCAIRGRWTFTNNDDPGCF 331
BLAST of mRNA_P-fluviatile_contig1.572.1 vs. uniprot
Match: A0A836CHX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX3_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 2.980e-11 Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 2
Query: 425 PLRITPNFQPQEKRRPK----TEVHRDITYGAFLTEESFDI-----AAMAWEEFSDFLRRTIERNVNGAQFEFDIRQWSSSIRKWWSRAVEMDVQAKADLFRLY 709
PLRI N P+ P+ + TY T + ++ AAMA EF D++ RT+ RN+ G FEFD RQW +S+ KWW RA+E D A+ + R Y
Sbjct: 67 PLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQY 170
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-04_002390.1 |
| Exons | 4 |
| Model size | 2455 |
| Cds size | 1077 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815354.2584867-UTR-P-fluviatile_contig1:6151578..6151762 | 1622815354.2584867-UTR-P-fluviatile_contig1:6151578..6151762 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 6151579..6151762 + |
| 1693561574.6191502-UTR-P-fluviatile_contig1:6151578..6151762 | 1693561574.6191502-UTR-P-fluviatile_contig1:6151578..6151762 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 6151579..6151762 + |
| 1622815354.317461-UTR-P-fluviatile_contig1:6154747..6155941 | 1622815354.317461-UTR-P-fluviatile_contig1:6154747..6155941 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 6154748..6155941 + |
| 1693561574.6667943-UTR-P-fluviatile_contig1:6154747..6155941 | 1693561574.6667943-UTR-P-fluviatile_contig1:6154747..6155941 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 6154748..6155941 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815354.268789-CDS-P-fluviatile_contig1:6151762..6152117 | 1622815354.268789-CDS-P-fluviatile_contig1:6151762..6152117 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6151763..6152117 + |
| 1693561574.6281252-CDS-P-fluviatile_contig1:6151762..6152117 | 1693561574.6281252-CDS-P-fluviatile_contig1:6151762..6152117 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6151763..6152117 + |
| 1622815354.278027-CDS-P-fluviatile_contig1:6152794..6152946 | 1622815354.278027-CDS-P-fluviatile_contig1:6152794..6152946 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6152795..6152946 + |
| 1693561574.6379538-CDS-P-fluviatile_contig1:6152794..6152946 | 1693561574.6379538-CDS-P-fluviatile_contig1:6152794..6152946 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6152795..6152946 + |
| 1622815354.2881727-CDS-P-fluviatile_contig1:6153590..6154136 | 1622815354.2881727-CDS-P-fluviatile_contig1:6153590..6154136 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6153591..6154136 + |
| 1693561574.6498744-CDS-P-fluviatile_contig1:6153590..6154136 | 1693561574.6498744-CDS-P-fluviatile_contig1:6153590..6154136 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6153591..6154136 + |
| 1622815354.3049366-CDS-P-fluviatile_contig1:6154723..6154747 | 1622815354.3049366-CDS-P-fluviatile_contig1:6154723..6154747 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6154724..6154747 + |
| 1693561574.658144-CDS-P-fluviatile_contig1:6154723..6154747 | 1693561574.658144-CDS-P-fluviatile_contig1:6154723..6154747 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 6154724..6154747 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.572.1 >prot_P-fluviatile_contig1.572.1 ID=prot_P-fluviatile_contig1.572.1|Name=mRNA_P-fluviatile_contig1.572.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=359bp
MKRQVRLLSGAGAALVIGRSQGFLGGSLPGLSTTSKSAAHQPRCRIVRLA LTPPPEPTGAAAAAGGEDNRKTSTRRITRAPLRITPNFQPQEKRRPKTEV HRDITYGAFLTEESFDIAAMAWEEFSDFLRRTIERNVNGAQFEFDIRQWS SSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDTWGNQAAKVDARVEDEW DSIYVDFQEISLDDNASGFGSTNKLEAEDGGYGSRSDGMMAMGRDLRGAN IPGSATTAMRAVATTTATGPQPRREGGRWRATNSDIGSTRSGGSRSALMA ALDAFNAEDEEDGEDDGKDEEGGAEGKGFDEDEIIDCAIRGRWRFENNDD PPHFSPQQ* back to topmRNA from alignment at P-fluviatile_contig1:6151579..6155941+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig1.572.1 ID=mRNA_P-fluviatile_contig1.572.1|Name=mRNA_P-fluviatile_contig1.572.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4363bp|location=Sequence derived from alignment at P-fluviatile_contig1:6151579..6155941+ (Porterinema fluviatile SAG_2381) CACGCACTTCGCTCGGCGGCACACGCGCCTGCAGTGCCACCCTCTCTCGC
CACCTGCTGCCTTTTTCCTGGTCCAATCTCTGAAGAAGTAAAACTCTCCC
CACGGCTCTACACGGTGCGGTTGCCAGGCCGTACCACACATACGAGAGAG
AGGAGACCACCGGAAAACTGCTTGCAAAACCGCGATGAAGCGTCAAGTTC
GTCTCCTTTCAGGAGCTGGTGCTGCGCTGGTGATTGGAAGATCCCAAGGC
TTTCTGGGCGGGAGCTTGCCCGGCCTATCCACCACCTCAAAATCTGCTGC
GCACCAGCCGCGCTGCAGAATCGTGCGCCTGGCCCTGACCCCGCCACCAG
AGCCCACAGGTGCCGCAGCAGCTGCCGGCGGCGAGGACAATCGGAAAACA
TCGACTAGGCGGATCACAAGAGCGCCGCTGAGAATAACGCCCAATTTCCA
ACCGCAGGAGAAGCGGAGGCCGAAGACGGAGGTGCACCGGGACATCACGT
ACGGGGCTTTCTTGACGGAGGAGAGCTTCGACATCGCTGGTAAGGTTGCA
CATGGAAGGAAGAACTTGGCTAACAGATACTGATGTGTTTGCCCCCGAGT
AACATCAGGGCGGTGTCTGTGTGCTGGCCGGGGTGCTGCCTCGTGGGGGC
AGGGCATGGCGAAGCGGTTTCAAATCGATTGGTACATGCGAGCGAGTTCT
GTTGCTGTTGATGAAAAAGAACGCAGAAGGTTGTACCTCTCGTGAACGTT
GAGTAAAACTTGAAGTTGTGAACTTTCTTGCCGGCGTGTGGTGGCTTTGA
AGAAAAGGCTTCACCGGCGTGTTTTGAAGCTTCTGACAAAGCATCAAGCA
TGCGAGATATCTCAAGGTCTGGACTGGATATTGCAAGAGCACAACACGTA
AAGGTCCAGAGTTTTCGTGTATTGGCTGGTTCCATTGCCATTGCCGTGCA
GACACAGAGACAGAGTGCTGTCTCGTCGACGATAACAGTGTTCGTTCGAG
GCCCCATTACACGCTGAGCTCGTCTGCTGACCCTGCCGCCACGTGAACCC
CCCACCCTTAGTACACACGTCGCCTGCCTGAGAGGGCAGGAGTTATCCCG
AATCGTGAACTCGCCGAGCACGTCGAATGCGTCTCAACACGCTACTGGCT
TACACCCTGCACACGAACATCATTCATTCCCAACCCACGGTCTCTTCCAA
TTTCGTCTCTCCGCAGCGATGGCGTGGGAGGAGTTCTCCGACTTTCTCCG
GCGGACGATCGAGCGCAACGTAAACGGGGCCCAGTTCGAGTTCGACATCC
GGCAGTGGTCAAGCAGCATTCGCAAGTGGTGGAGCCGGGCAGTCGAGATG
GACGTGCAGGCAAAAGCCGTGAGTGCGAACTACAGACCCAACAGTTCTGG
CGTGGCTCTGAGGATTGTCTTGCGCGCTCTTTGTGTGATGCCGAATCTCG
AGGGTCTGGAGGATAAATTTCCATCGAACGATTGTTTTTGAGTTACTTTT
GGTTTCTACTCTCGACGTTTTGCCGCGAGTCTCCGGGCTTCAACTGAATT
TTTTTAACCTCCATCATCATCGTAGATGTACAGAAGAACCTATTGATCCC
CGTGATATGCATCATCCCCCAAATCCCCGGATCTAGTCGACGAGCCAGGA
TCAAACACCGGAAATTCTCCGTGGTGCTTCACTTGATTTTCTTCGACTGC
CCTCGGGGCGAATTTGCTGGCCTGCTTTGTCCCTGAAATGTTAGCAAGCT
AAGTCCTGAGTGTTGGCAGGTACGCAGGCAGGCAAGCAGCTGCGCCAGTA
GCAAGGAGAGGCACCCCAGATGTCTACGGAGCGAACAAACGGCAATGCCG
CCCGACACAAACGCGAAGCAGTCGAAGAAAACCACATCCCATTTCTGTTC
TCCGACGCATACCCACCTCTCCATCCTTTCTACACACGCACAAGTTAGCG
CGCTTAGACAATATTCCCTCGCCGATTCATTTGTGTATGTTGACGGCTAC
TGTGCTGCATAGGACCTGTTTCGGCTGTATGACAGCAGCGTGGGACAACG
GGACACGTGGGGGAACCAGGCCGCCAAGGTTGACGCGAGGGTCGAGGACG
AGTGGGACAGCATTTACGTAGATTTCCAGGAAATTTCGTTGGACGACAAC
GCGAGTGGCTTCGGCAGTACTAACAAGCTTGAGGCAGAAGATGGCGGCTA
CGGCAGCCGGTCAGATGGGATGATGGCGATGGGACGAGACTTGCGCGGCG
CAAATATTCCCGGGTCCGCCACTACAGCGATGAGGGCAGTGGCGACAACG
ACGGCGACGGGGCCGCAGCCGAGACGAGAGGGGGGGCGGTGGCGGGCGAC
AAATAGCGATATTGGGAGCACACGCAGCGGTGGATCCCGATCTGCGCTCA
TGGCTGCACTGGACGCGTTCAATGCGGAGGACGAGGAGGATGGAGAGGAC
GATGGGAAGGATGAGGAGGGAGGGGCCGAGGGCAAAGGCTTTGACGAGGA
CGAGATTATCGACTGCGCCATCAGAGGTCGCTGGAGATTCGAGAACAACG
ATGATCCTGTGAGAGAGCACGAGGGAGAGAGTTGTTTTCTCTCGTTTATG
TGTGTTTGTTTCCCCCCCCTGTTGTGCCCCTCCTCGATGTGTGTCGTGTT
TTAGCGGAAATGAAGACAGTCGTTCGACGAGATCTGTCCGCCTTCCTCTG
AGTGGCATCGATTGCACCTCTGCTCGCAGGCGCAAACGCTGCCACTAGGC
CCAGCGTTGCGCATCAACCCATTCGTGGCGGCCTCCAAAACATGGAAGCA
GTGCGAACCTCGTCGTGGTTGCACCCGTCTAAAGCTGGGTTTCTCGTCCT
CGTGTGCATCTGGCGCAGTTTTTGGCGTGTTTATCACGGGCTCGTGGAAG
TGTAGCTCGTACGCTGAAGTCTCTCTCTACTACACGCGACGACTCTTTCA
TAATTCTTTTTTGGTAATGCCTCGGCCACATAAAATGGGTTGCCTCGAAG
CGTTTGCGGGGGCTGCACTGCAGCCTCGACCTCTCCCCCCCCCCTGTTCC
TCTTACGTTTCCCTCACCCACCCGCTGTCCTGCGTTTGCGTGCCCTTCTC
CTTGCGCGCTCTTTCATTCCCTTTGCGCTTCTTGTCTTGCCCCAGCCTCA
CTTTTCTCCCCAACAATAGCGGAGCCGGCATACCACCACAGGTGGCATGC
GGAGCGGATTAAATAGAAAGGGGTTGGTCTGGTGGTCATGCCGCTGGGTA
AGCTCTGGGGAAGAGAGTTTAGAGGAAGATCACATGCGGCGGCGCATGTT
TGTAAATGGGAACGTGCCGGAGGGGAGGGAATCGGGGAGGCGGGGGGGCG
AGCGTATGGGCGTACAATTACGTGTAGCTATATGATGTTGAACGTTTCGT
GTGCGTCTTTCGGAGCGCACCACCTGATTCGCAGCACAGCTGGGACGGCG
AGCGCCGGGCTCTTGCGGTCTTGTGTGTGTGCGAAGGCACGACAGCGGGG
CCAGAGAAGCGAGGACGAGAGGGAGGTGTGCACGCCGAGATCGATGGGTA
TTAGGCACTCAGTGCGGATGAAATTTAATCTGTCCGTGGTGGCAGGGCGA
ATCACTTGGGGGGGAGCGAGGGGGGGGGAACAAAATTTGTGTGTATTGGT
TCGTAACGCAGCGGTCCTAACAGTACGTAGTGGTCGACCCAGAGCTTGAT
ATCGCAGCACGCAGCAGGCTGAATTCTGATTGGAGCCGCTGCAGCACTGG
CTGGTGGATGTCGAAGGAGCAGGGTGGCCGCGGGCAGTCTGGGGTAATTT
AGCGAGCGTTAGGCCGTATGTTGTAAATTGCGGTTGTTGCGGGTGGCCCT
TCTTCCTTGTTAAATATTATCCGTTCCCACAAAAGCACTGTTCTCGCGGC
CTGAGTTCGGGAGAAAGGCCCCCATTTGTTGTTTCGTGTGTATCCCGAGA
GGAGCGAAGTGTTGGTATGCAACGTGGTGAAACCGCGAAGAGAGTCAGTC
GCCTGGTAGCCAGCCGCCGCTAGCAGGCTGCTTTGATATGATGCGAAAAG
CGTTTTACGTAAATGGAAGCACAGGAAGTCGAAAAATGATGAATGATACT
GGTGATGCTATGGCGTTCACTGGTCGTGCTTGTCTTCGTCTCGAGAAAAT
GAAGCCGTCCGAGTAGCTTCCATGTTGTCAACCATACAGCCCACAAACCA
AGCGGAGCATTTCAGGATGCTGACAGCCTTGGCTGCGTGTGCTTCGACAC
GTGCAACACGAGGCTGGGAAGTCCACCTTTTACCCGCTTGGAAGCGAACA
AGAACGCGGTGATGCACTACTCTTTTCGTGACATGGCGGGTCAGTCCGAC
GTGACTAGAGGAT back to topCoding sequence (CDS) from alignment at P-fluviatile_contig1:6151579..6155941+ >mRNA_P-fluviatile_contig1.572.1 ID=mRNA_P-fluviatile_contig1.572.1|Name=mRNA_P-fluviatile_contig1.572.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2154bp|location=Sequence derived from alignment at P-fluviatile_contig1:6151579..6155941+ (Porterinema fluviatile SAG_2381) ATGAAGCGTCAAGTTCGTCTCCTTTCAGGAGCTGGTGCTGCGCTGGTGAT TGGAAGATCCCAAGGCTTTCTGGGCGGGAGCTTGCCCGGCCTATCCACCA CCTCAAAATCTGCTGCGCACCAGCCGCGCTGCAGAATCGTGCGCCTGGCC CTGACCCCGCCACCAGAGCCCACAGGTGCCGCAGCAGCTGCCGGCGGCGA GGACAATCGGAAAACATCGACTAGGCGGATCACAAGAGCGCCGCTGAGAA TAACGCCCAATTTCCAACCGCAGGAGAAGCGGAGGCCGAAGACGGAGGTG CACCGGGACATCACGTACGGGGCTTTCTTGACGGAGGAGAGCTTCGACAT CGCTGATGAAGCGTCAAGTTCGTCTCCTTTCAGGAGCTGGTGCTGCGCTG GTGATTGGAAGATCCCAAGGCTTTCTGGGCGGGAGCTTGCCCGGCCTATC CACCACCTCAAAATCTGCTGCGCACCAGCCGCGCTGCAGAATCGTGCGCC TGGCCCTGACCCCGCCACCAGAGCCCACAGGTGCCGCAGCAGCTGCCGGC GGCGAGGACAATCGGAAAACATCGACTAGGCGGATCACAAGAGCGCCGCT GAGAATAACGCCCAATTTCCAACCGCAGGAGAAGCGGAGGCCGAAGACGG AGGTGCACCGGGACATCACGTACGGGGCTTTCTTGACGGAGGAGAGCTTC GACATCGCTGCGATGGCGTGGGAGGAGTTCTCCGACTTTCTCCGGCGGAC GATCGAGCGCAACGTAAACGGGGCCCAGTTCGAGTTCGACATCCGGCAGT GGTCAAGCAGCATTCGCAAGTGGTGGAGCCGGGCAGTCGAGATGGACGTG CAGGCAAAAGCCCGATGGCGTGGGAGGAGTTCTCCGACTTTCTCCGGCGG ACGATCGAGCGCAACGTAAACGGGGCCCAGTTCGAGTTCGACATCCGGCA GTGGTCAAGCAGCATTCGCAAGTGGTGGAGCCGGGCAGTCGAGATGGACG TGCAGGCAAAAGCCGACCTGTTTCGGCTGTATGACAGCAGCGTGGGACAA CGGGACACGTGGGGGAACCAGGCCGCCAAGGTTGACGCGAGGGTCGAGGA CGAGTGGGACAGCATTTACGTAGATTTCCAGGAAATTTCGTTGGACGACA ACGCGAGTGGCTTCGGCAGTACTAACAAGCTTGAGGCAGAAGATGGCGGC TACGGCAGCCGGTCAGATGGGATGATGGCGATGGGACGAGACTTGCGCGG CGCAAATATTCCCGGGTCCGCCACTACAGCGATGAGGGCAGTGGCGACAA CGACGGCGACGGGGCCGCAGCCGAGACGAGAGGGGGGGCGGTGGCGGGCG ACAAATAGCGATATTGGGAGCACACGCAGCGGTGGATCCCGATCTGCGCT CATGGCTGCACTGGACGCGTTCAATGCGGAGGACGAGGAGGATGGAGAGG ACGATGGGAAGGATGAGGAGGGAGGGGCCGAGGGCAAAGGCTTTGACGAG GACGAGATTATCGACTGCGCCATCAGAGGTCGCTGGAGATTCGAGAACAA CGATGATCCTGACCTGTTTCGGCTGTATGACAGCAGCGTGGGACAACGGG ACACGTGGGGGAACCAGGCCGCCAAGGTTGACGCGAGGGTCGAGGACGAG TGGGACAGCATTTACGTAGATTTCCAGGAAATTTCGTTGGACGACAACGC GAGTGGCTTCGGCAGTACTAACAAGCTTGAGGCAGAAGATGGCGGCTACG GCAGCCGGTCAGATGGGATGATGGCGATGGGACGAGACTTGCGCGGCGCA AATATTCCCGGGTCCGCCACTACAGCGATGAGGGCAGTGGCGACAACGAC GGCGACGGGGCCGCAGCCGAGACGAGAGGGGGGGCGGTGGCGGGCGACAA ATAGCGATATTGGGAGCACACGCAGCGGTGGATCCCGATCTGCGCTCATG GCTGCACTGGACGCGTTCAATGCGGAGGACGAGGAGGATGGAGAGGACGA TGGGAAGGATGAGGAGGGAGGGGCCGAGGGCAAAGGCTTTGACGAGGACG AGATTATCGACTGCGCCATCAGAGGTCGCTGGAGATTCGAGAACAACGAT GATCCTCCTCACTTTTCTCCCCAACAATAGCCTCACTTTTCTCCCCAACA ATAG back to top
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