mRNA_P-fluviatile_contig1.566.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig1.566.1 vs. uniprot
Match: D8LFM1_ECTSI (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM1_ECTSI) HSP 1 Score: 948 bits (2450), Expect = 2.770e-306 Identity = 836/1987 (42.07%), Postives = 973/1987 (48.97%), Query Frame = 2
Query: 722 LDQLLWAITVAAGNCRCSVPVLVSCDWDGFVDDPAVGGDGGGVQSGASCKGYSAPGSKGIACSVRFQTAWTEEPPPECLYLDGLTELFLSKIRDAHRVPGRSFAPVVFAAAQKSWEWTKPRGAAGAAMPAPAVPWDEAGRGXXXXXXXXXXXXXXXXXXXAAAVGERIRGTRGELEIPPPLPPVLAGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADEGGEVGGDR---VAPPLWGPDEDPLVSLSVRVRWADLREGLVEESQHYTTLEPLPQEAWSLAAGSGAGVRGDVSGAGLGAQWFLSPRWRPRGGAADSXXXXXXXXXXXXXXXXXXNGNTSVHRHLQGVQQGRLGDACCRLLAALVLTTAMHPGTLMADLGAGPVADGPMALAEDYGKAASAMLSAETREAVEVMCSKAQSPPIDHDEIDRILRHLLHAHPQGQGKEDGGSGAVESVTAXXXXXXXXAALWHLAGSDAGGSRTGEGQHLAPSWSSSXXXXXXXXSRWRQVYPVRAAQGSLGRGKEWMQVYPRPTWGEDGTPKNSTVRRSPPGVAXXXXXXXXXXXXXXXXXXXXXXXDGDGGGAWGPWQLSFAEGGGAVVDERTRE-----ERSLWAWAECGGVPIGRLLSLLSLRVAECEDLASMSLLWMSFVRDVRHLWEDGALLARMSPIPEVDGTSMFDRSVGCTGQDRSVASQLRGKMQAYAFSAAADDEAGGRGVRYADGGGPLPGSRRGNWQQETGAEGSLLYPDTRMCLIWQKLQMLNCCRAGVAGRVELRSSRPPSPPPLPGLGSGXXXXXXXXXXXXXXXXXXXDEDFFDTREYYQTSEDEGCDGDIGXXXXXXXXXXXHGCGEGGPPEIDVAGGDXXXXXXXXXXTAEANAAESGGDASDTPATGXXXXXXXXXXXXAPGVGGDSTDGGAQQQLFGGSGSSDXXXXXXXXXXXXXXXXXXGFSDDSAQQQQGEVLSLSAPGGKPARLMMEQIGALPNAAADTAGDSDEIGSGVIGSARESGAGDDIPQE---GRGRSAS-----GAAETPADVKSGAATEVPTPGA---DSSAPGTPLAEVAAEAXXXXXXXXXXXXXXXXXKPGATADEHAETPTPXPPSTATEMDAVDQLAAT----AAPAAATSAATVEVGADHPRDDLP----RESTRAA-ERERSGVLLAASAGE-----EGVPPPTVSPSKEAEEENSPAGEVVRGG----DLGDGDRASSFFSPVRLADEKMATL--PTGANVSPGAVDTGAAVEESP----------------------SPAAPETSLDIAVESGPASAAGGAPGNDCNSAEITLPVSAVAASPPLVSSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLMQRHS-----------------------------------------------PSVQRLLCTGAVVRPPRLQDSGPVTGDMLEQQTLGQASAYRGREVLLADMKAFRAANGGDRGGEHGLEGGGVVFADFVRWYRPECWQSTAESEEEWANPSENRPGGAAADDLRLCWAGHGQVLWKVPPGGQQXXXXXXEADGRRTGPPGFTAAPAAVPTPQHSGDSMPPFXXXXXXXSAVTLAGWLSCWEDSGARTTASFTVGGAEQEEEGGPVAPPIASPLLFKGVKEGEKALHFLETISPVPLLVQLLCGLLGLSVFVLEEACTGAGSLPSVQITVNAARRKVVEAVELLAVASTPTLIPSEVAEGRNTSGTVGGEERAGDSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGPAXXXXXXXXXASLSPFRAALLSADCACVAVKRAETTLAKAVSLQRSLPGQRELVDSVVVACDEDAARGGGVGEAHVTARPHKEFLRDLLLAQGIQKALGSELDDLLASYDEDCVEEPGDRGGADGSGNXXXXXXXXVMPPPHTKEYVLRCQTPGPYYSRNIGRGQMEAYPTPPSRMYAKTDGKNLRVALSLCESEI 6358
+D LLWA TVAAGNCRCSVPVLVSCDWDG V+D + GG VQSGASCKGYS PGSKG+ACSVRFQTAWTE+P ECL+LDGLT+LFLSKIRDAH +PGR+FAP+V Q+SWEWTKP A A +PAPA+PW+ G XXXXXXXXXXXXXXXXXX G R + GE P + G XXXXXXX +GG R + P+WGPDEDPLVS+ VRVRW DLREGLVEESQHYTTLEPLP+EA AG+G G G SGAG+G WF+SPR GRLGDAC RLLAALVLTTAMHPGTLMADLGAG + DG ALA+DYGKAASA LS ETR+AVE MC ++QSP I+HD+ID ILR+LLH+ QG+E A+ A +GG +G + A SRWRQV+ Q ++W QVYPR G +S+ RR PG W A G G T RSLWAWAE GG PIGRLLSLLSLRVA C+DL SMSLLWMSFVRDVR LWEDGA +ARMSPI VDGTSMFDR CTGQDRSVASQLRG QA S D+ G G G LP W + + YPDTR CLIWQKLQMLNCCRA ++ L+ S SPPP +G G +E FFDTREYYQTSEDEG G G C G ++D GG+ +A+ E G T GG + + G + D ++ A + V+S + G + + +G D AGD G+ A E+ PQ+ G G SA A TPA + A ++ GA + G + V PG T E A +P P S TE AV A+ PA+ TS++ V D + LP E+T E E ++AA++ E EG PT EAE E GE GG +L G + S P+ SP ++TGA +E P SPA PE +S A AAG +D ++ P ++ A+ +S SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S P ++RLLC+GA VRPPRLQ+ GPVT DML QQTLGQA+AYRGREVLLADM AFR+ NGG +G VFADFVRWYRPECWQ A ++ EW + SE R GG A DD RL W G GQV+W+ G+Q R P AA P H G +PP S TLAGWLSCW +GA A LF GV EGEKALHFLETISP PLLVQLL LLGLSVFVLEEAC GA SLPSV+ +V+ AR ALL+AD ACVAVKRAET L++AVSLQRSLPG+++LV+ +V AC ++ +GGG E V+ARPHKEFLRDLLLAQGIQK GSELD+LLASYDE+ XXXXXXXX TKEYVLRCQTP P+YSRN+GRGQMEAYPTPPSRMYAKTDG NLRVALSLCES+I
Sbjct: 3 VDHLLWATTVAAGNCRCSVPVLVSCDWDGLVEDDSSGGVV--VQSGASCKGYSTPGSKGVACSVRFQTAWTEKPSRECLFLDGLTDLFLSKIRDAHCLPGRAFAPIVSTTVQQSWEWTKPEEEA-AQLPAPALPWE----GGXXXXXXXXXXXXXXXXXXXXXDGRRGGTSLGE--------PTVGGDPQGPTTXXXXXXXAGDRGGVGSREDAVRQLLRA---IGGGREQEIGTPVWGPDEDPLVSIFVRVRWTDLREGLVEESQHYTTLEPLPEEA---RAGAG-GADGGYSGAGVGGHWFVSPR-------------------------------------------GRLGDACSRLLAALVLTTAMHPGTLMADLGAGSLEDGRTALAQDYGKAASAKLSDETRKAVEEMCRRSQSPSINHDDIDLILRYLLHS----QGEE--------------------RAVVPAANQGSGGGPDADGDNKA-----RRVQPPLPSSRWRQVHLGARQQDPRQSTEKWKQVYPRAR----GVTDDSSKRRLQPGGGAAEPASVPNDPSHGDVNRTMEAS----------WAELSASGSGRASSYETMTGGRGGRRSLWAWAERGGAPIGRLLSLLSLRVASCDDLGSMSLLWMSFVRDVRLLWEDGATIARMSPIAAVDGTSMFDRGASCTGQDRSVASQLRGSSQADGGSVDVSDDGSG-------GDGSLP-----PWSDRS----LVPYPDTRTCLIWQKLQMLNCCRAEGGAQMGLQLS---SPPPSQDVGDGTADQGEGEKGPGDDED---EEAFFDTREYYQTSEDEGSSGGTGGGLQDDR------CSAG---DVD-RGGERSAEDDDVLASADRGTGEVG------------------------------TGGGVRDEHGGDRDADDSAGGVR--------------AEPGAGEDYEGVISAATSGDSNSAAESDAVG-------DRAGDLSGCNEGLPKDASEN-----RPQQQQRGEGSSAQVLDDETAEITPASTAAATAVDLSKLGAGREELGVTGRAVTVVEGGDDRRSSSSTGGIDGEETVSPGDTTTETAASPIAPPLSAGTEEVAVVPSLASRLGEGEPASPTSSSPVPSLGDDANEALPCAVATETTMIGPEEEDVATIVAATSDEAMSVDEGGDNPTTQNMPEAEREE---GEKEVGGKDEEELQQGADSPSXXXXXXXXXXXXXXXXEPSSPPSSPPPMETGARTDEVPRNGSADDGSDGLACKDTPPPSSSPANPEEETPDTTKSSLA-AAGEVISDDRST--CPSPKASTMAAGEAISEISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISEALPEKRTAIIAMENSPDASDKAFGCPEAAPTAATGSAAAVGEEPLVPPMRRLLCSGAAVRPPRLQECGPVTEDMLRQQTLGQAAAYRGREVLLADMTAFRSENGGG-------DGDAAVFADFVRWYRPECWQE-ATADGEWVSASEGRLGGRAEDDKRLAWPGQGQVVWRSAVTGRQVHGQ------NRDEAPEAAAADELSPG-DHLG--LPP-----ALPSPFTLAGWLSCWGQAGAAVRAEXXXXXXXXXX--------XXXXXLFSGVTEGEKALHFLETISPGPLLVQLLSALLGLSVFVLEEACLGADSLPSVEASVDTART------------------------------------------------------------------------------------------------------ALLAADGACVAVKRAETALSRAVSLQRSLPGKKDLVNDMVAACGDEEEKGGG--EVPVSARPHKEFLRDLLLAQGIQKTPGSELDELLASYDEE-------HRXXXXXXXXXXXXXXXXXXXXETKEYVLRCQTPAPFYSRNVGRGQMEAYPTPPSRMYAKTDGSNLRVALSLCESDI 1646
BLAST of mRNA_P-fluviatile_contig1.566.1 vs. uniprot
Match: A0A6H5JCY7_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY7_9PHAE) HSP 1 Score: 867 bits (2239), Expect = 1.890e-274 Identity = 832/1893 (43.95%), Postives = 968/1893 (51.14%), Query Frame = 2
Query: 722 LDQLLWAITVAAGNCRCSVPVLVSCDWDGFVDDPAVGGDGGGVQSGASCKGYSAPGSKGIACSVRFQTAWTEEPPPECLYLDGLTELFLSKIRDAHRVPGRSFAPVVFAAAQKSWEWTKPRGAAGAAMPAPAVPWDEAGRGXXXXXXXXXXXXXXXXXXXAAAVGERIRGTRGELEIPPPLPPVLAGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADEGGEVGGDRVAPPLWGPDEDPLVSLSVRVRWADLREGLVEESQHYTTLEPLPQEAWSLAAGSGAGVRGDVSGAGLGAQWFLSPRWRPRGGAADSXXXXXXXXXXXXXXXXXXNGNTSVHRHLQGVQQGRLGDACCRLLAALVLTTAMHPGTLMADLGAGPVADGPMALAEDYGKAASAMLSAETREAVEVMCSKAQSPPIDHDEIDRILRHLLHAHPQGQGKEDGGSGAVESVTAXXXXXXXXAALWHLAGSDAGGSRTGEGQHLAPSWSSSXXXXXXXXSRWRQVYPVRAAQGSLGRGKEWMQVYPRPTWGEDGTPKNSTVRR-SPPGVAXXXXXXXXXXXXXXXXXXXXXXXDGDGGGAWGPWQLSFAEGGGAVVDERT---RE-ERSLWAWAECGGVPIGRLLSLLSLRVAECEDLASMSLLWMSFVRDVRHLWEDGALLARMSPIPEVDGTSMFDRSVGCTGQDRSVASQLRGKMQAYAFSAAADDEAGGRGVRYADGGGPLPGSRRGNWQQETGAEGSLLYPDTRMCLIWQKLQMLNCCRAGVAGRVELRSSRPPSPPPLPGLGSGXXXXXXXXXXXXXXXXXXXDEDFFDTREYYQTSEDEGCDGDIGXXXXXXXXXXXHGCGEGGPPEIDVAGGDXXXXXXXXXXTAEANAAESGGDA------------SDTPATGXXXXXXXXXXXXAPGVGGDSTDGGAQQQLFGGSGSSDXXXXXXXXXXXXXXXXXXGFSDDSAQQQQGEVLSLSAPGGKPARLMMEQIGALPNA--AADTAGDSDEIGSG--VIGSARESGAGDDIPQEGRGRSASGAAETPAD------VKSGAATE-VPTPGADSSAPGTPLAEVAA-----EAXXXXXXXXXXXXXXXXXKPGATADEHAETPTPXPPSTATEMDAV---DQLAATAAPAAATSAATVEVGADHPRDDLPRESTRAAERERSGVLLAASAGEEGVPPPTVSPSKEAE-----------------------------------EENSPAGEVVRGGDLGDGDRASSFFS-----PVRLADEKMATLPTGANVSPGAVDTGAAVEESPSPAAPETSLDIAVESGPASAAGGAPGNDCN---SAEITLPVSAVAASPPLVSSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLMQRHSPSVQRLLCTGAVVRPPRLQDSGPVTGDMLEQQTLGQASAYRGREVLLADMKAFRAAN-GGDRGGEHGLEGGGVVFADFVRWYRPECWQSTAESEEEWANPSENRPGGAAADDLRLCWAGHGQVLWKVPPGGQQXXXXXX----EADGRRTGPPG-FTAAPAAVPTPQHSGDSMPPFXXXXXXXSAVTLAGWLSCWEDSGARTTASFTVGGAEQEEEGGPVAPPIASPLLFKGVKEGEKALHFLETISPVPLLVQLLCGLLGLSVFVLEEACTGAGSLPSVQITVNAARRKVVEAVELLAVASTPTL-----------------IPSEVAEGRNTSGTVGGEERAGDSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGPAXXXXXXXXXASLSPFRAALLSADCACVAVKRAETTLAKAVSLQRSLPGQRELVDSVVVACDEDAARGGGVGEAHVTARPHKEFLRDLLLAQGIQKALGSELDDLLAS 6094
+D LLWA TVAAGNC+CSVPVLVSCDWDG VDD + GG VQSGASCKGYS PGS GIACSVRF TAWTE+P ECL+LDGLT+LFLSKIRDAH +PGR+FAP+V Q+SWEWTKP A A +PAPA+PW+ G XXXXXXX XXXXXXXXXXX G + G G XXXXXXXXXXXXXXXXX G G P+WGPDEDPLVS+ VRVRW DLREGLVEESQHYTTLEPLP+EA G G G SGAG+ GG D+XXXXXXXXXXXXXXXXXX HR GRLGDAC RLLAALVLTTAMHPGTLMADLGAG + DG ALA+DYGKAASAMLS ETR+AVE MC +++SP I+HD+ID ILR+LLH+ QG+E GAV + AA G DA G+ + + + PS SS RWRQV+ Q ++W QVYPR G +S++R+ P G A +W +LS + G A DE RE RSLW WAE GG PIGRLLSLLSLRVA C+DL SMSLLWMSFVRDVR LWEDGA +ARM+PI VDGTSMFD S CTGQDRSVASQLRG QA A D++ GR G LP W + +LYPDTR CLIWQKLQMLNCCRA A +V+L+ PSPPP +G G +E FFDTREYYQTSEDEG GDIG CG G ++ G A + A GG +D A G XXXXXXX S DG + + SD S++ QQQQ + G A ++ ++ + A AA TA D +IG G +G A G I ++G RS + SG E V +P A + GT EVAA A X D+ E P + AT+ + ++ ATA A A +V G D+P ++ AERE G EE + SP +E E + EV R GD GD S F+ P + +P A S A G V + + A+P+ S+ S E + A+ SP + + PL+ P ++RLLC+GA VRPPRLQ+SGPVT DML+QQTLGQA AYRGREVLLADM AFRA N GGDR VFADFVRWYRPECWQ T ++ EW + SE R GG A DD RL W G GQV+WK G Q EAD PG P A+P+P LAGWLS W +GA AE+E PL F GV EGEKALHFLETISP PLLVQLL LLGLSVF+LEEAC GAGSLPSV +V+ ARRKVVEAVELL+ AST + EGR +G GG XXXXXXXXXXXXXXXXXXXX +SLSPFR ALL+AD ACVAVKRAET L++AVSLQRSLPG+R+LV+ +V AC ++ +GGG E V+ARPHKEFLRDLLLAQGIQK GSELD+LLAS
Sbjct: 3 VDHLLWATTVAAGNCKCSVPVLVSCDWDGLVDDDSSGGVV--VQSGASCKGYSTPGSTGIACSVRFHTAWTEKPSRECLFLDGLTDLFLSKIRDAHCLPGRAFAPIVSTTVQQSWEWTKPEEDA-AQLPAPALPWEGGGXXXXXXXXXFXXXXXXXXXXXXRRGGTSLGEFPG------------GGDPQGPXXXXXXXXXXXXXXXXXAREDAVRQLLRAVGGGSGQESRTPVWGPDEDPLVSIFVRVRWTDLREGLVEESQHYTTLEPLPEEA----RGGAGGADGSYSGAGV-------------GGHCDNXXXXXXXXXXXXXXXXXXX---XXHR-------GRLGDACSRLLAALVLTTAMHPGTLMADLGAGSLEDGRTALAQDYGKAASAMLSDETRKAVEDMCRRSKSPSINHDDIDLILRYLLHS----QGEE----GAVAT-----------AANQGCGGLDADGNN--KARRVQPSLPSS---------RWRQVHLGTRQQDRRQSTEKWKQVYPRAR----GVTDDSSLRQLQPEGGAAERTSVPNDQSHRDVHGTMEA--------SWA--ELSTSGSGRASSDETMMGGREGRRSLWVWAERGGAPIGRLLSLLSLRVASCDDLGSMSLLWMSFVRDVRLLWEDGATIARMNPITAVDGTSMFDWSASCTGQDRSVASQLRGSRQADGGGADGSDDSSGRD-------GSLP-----PWSDHS----LVLYPDTRTCLIWQKLQMLNCCRAEGAPQVDLQ----PSPPPSQDVGDGAADQGGGEKGPGDDED---EEAFFDTREYYQTSEDEGSSGDIGGGLQDDQ------CGAG---DVGRGGECGAEDDARGVVAASISGAGEGGTVGGVQDGHDGDRDADDKAGGVHAEPXXXXXXXXXLSAATSGDGNSAAE-------SDAVGDHADGLSGCNEDLPKDASENHPQQQQRDE-------GSSAPVLDDETAEITPAPTAAATAVDLSKIGVGREELGVA---GVAIAIVEDGDDRSGXXXXXXXXXXXXXXIISSGDTAETVASPIAPPLSAGTD--EVAAVPALAPATATQLREGEPASPTSSXXXXXLGDDANEA---LPCAVATKKTMIRPEEEDVATAVAATPDEAMSVNEGGDNPTT----QNMLKAEREE-GEKXXXXXXEEELQQRVDSPFEEXXXXXXXXXXXXXXXXXXXXXXXXXXPSSPPSSPPPMETGARTVEVPRNGD---GDDCSDGFASEDTPPPSSSANPEEEMPGTAKASLAAA--GEVVSDRYTCASPKASIXXXXXXXXXXXXXXXXXXXXXXXXSPEKQTAIIAMDNSPEALDNA-----------LGRPEVAPTAASGSTAAVGDGPLV----PPMRRLLCSGAAVRPPRLQESGPVTEDMLKQQTLGQAPAYRGREVLLADMTAFRAENDGGDRDA--------AVFADFVRWYRPECWQETT-ADGEWVSASEGRLGGRAEDDKRLAWPGQGQVVWKPSVTGHQGQGQNWDETPEADAADELSPGDHLGLPPALPSP-------------------FKLAGWLSYWGQAGAAVQ-------AEKEXXXXXXXXXXXXPL-FSGVTEGEKALHFLETISPGPLLVQLLSALLGLSVFILEEACLGAGSLPSV--SVDTARRKVVEAVELLSSASTTATHDDAXXXXXXXXXXXXXXXXXLLEGRRDNGCSGGAXXX-----------------XXXXXXXXXXXXXXXXXXXXISASLETAAEVSRESSRDRSSLSPFRTALLAADGACVAVKRAETALSRAVSLQRSLPGKRDLVNDMVAACGDEEEKGGG--EVLVSARPHKEFLRDLLLAQGIQKTPGSELDELLAS 1673 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.566.1 >prot_P-fluviatile_contig1.566.1 ID=prot_P-fluviatile_contig1.566.1|Name=mRNA_P-fluviatile_contig1.566.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=2093bp MTPPGGDVGFGLRQQADDEDGQWEDYTCQGSFEHLIRDLEIVLREWRACNback to top mRNA from alignment at P-fluviatile_contig1:6095629..6112889- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig1.566.1 ID=mRNA_P-fluviatile_contig1.566.1|Name=mRNA_P-fluviatile_contig1.566.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=17261bp|location=Sequence derived from alignment at P-fluviatile_contig1:6095629..6112889- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig1:6095629..6112889- >mRNA_P-fluviatile_contig1.566.1 ID=mRNA_P-fluviatile_contig1.566.1|Name=mRNA_P-fluviatile_contig1.566.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=12558bp|location=Sequence derived from alignment at P-fluviatile_contig1:6095629..6112889- (Porterinema fluviatile SAG_2381)back to top |