mRNA_P-fluviatile_contig1.563.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.563.1
Unique NamemRNA_P-fluviatile_contig1.563.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6079481..6080164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size684
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.563.1prot_P-fluviatile_contig1.563.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6079596..6079967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.2171586-UTR-P-fluviatile_contig1:6079480..60795951622815271.2171586-UTR-P-fluviatile_contig1:6079480..6079595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6079481..6079595 +
1693561323.3961127-UTR-P-fluviatile_contig1:6079480..60795951693561323.3961127-UTR-P-fluviatile_contig1:6079480..6079595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6079481..6079595 +
1622815271.2393382-UTR-P-fluviatile_contig1:6079967..60801641622815271.2393382-UTR-P-fluviatile_contig1:6079967..6080164Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6079968..6080164 +
1693561323.4131339-UTR-P-fluviatile_contig1:6079967..60801641693561323.4131339-UTR-P-fluviatile_contig1:6079967..6080164Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6079968..6080164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.230134-CDS-P-fluviatile_contig1:6079595..60799671622815271.230134-CDS-P-fluviatile_contig1:6079595..6079967Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6079596..6079967 +
1693561323.4052722-CDS-P-fluviatile_contig1:6079595..60799671693561323.4052722-CDS-P-fluviatile_contig1:6079595..6079967Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6079596..6079967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.563.1

>prot_P-fluviatile_contig1.563.1 ID=prot_P-fluviatile_contig1.563.1|Name=mRNA_P-fluviatile_contig1.563.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=124bp
MNTHLPCLVVCVYRDRSVDICTPSLRSSSGTEQPRTEGGAQPDSKPSSVS
GTAAPRPILRDLYRLSCQNSLFHNAAGADKYRRGTRTLLMDPSRNDCGHP
QRAHLVEALRRGASAFCSGMIPQ*
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mRNA from alignment at P-fluviatile_contig1:6079481..6080164+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.563.1 ID=mRNA_P-fluviatile_contig1.563.1|Name=mRNA_P-fluviatile_contig1.563.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=684bp|location=Sequence derived from alignment at P-fluviatile_contig1:6079481..6080164+ (Porterinema fluviatile SAG_2381)
CCCGATATGGCAAAGATCACACATTTGTGATAACTCTTGTCCGTCCGTAC
TGTACGCTCTTTTGGTTCATGCCCTCCGCGGTCCTCGCTGAAGCACCACC
AGAATACAAAAGACGATGAACACACACCTGCCTTGTTTGGTCGTGTGCGT
GTACCGCGATCGAAGCGTGGACATATGTACCCCAAGCCTTCGATCGAGCA
GTGGAACAGAGCAACCACGCACAGAGGGAGGAGCCCAACCCGATTCGAAG
CCGTCGAGTGTTTCTGGTACAGCTGCGCCCCGACCAATATTGCGTGATTT
GTACAGGCTCTCCTGTCAAAATAGCCTATTTCACAATGCGGCCGGTGCTG
ATAAATATCGGCGAGGCACACGCACACTACTGATGGACCCATCACGAAAC
GATTGCGGCCACCCGCAGCGCGCGCATCTAGTGGAAGCGCTCCGACGAGG
AGCATCTGCTTTCTGTTCTGGAATGATCCCGCAATAATATCGGAAGAACA
CGATGAAAGGAGGGTGATTCAAGAGCACGCCATGCACAAATGGCCACACC
GAAGAATCATCTATTGGTCAGCTTCACAAGCATACTCGCGATGATGAAAT
ACACAACGTACCTAAGCAACCTGATCGCCAACGGCCGCACTTTCGGCAAC
AACTTACTCCGCCCCGCTAGCCCTCCCGGTCTCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6079481..6080164+

>mRNA_P-fluviatile_contig1.563.1 ID=mRNA_P-fluviatile_contig1.563.1|Name=mRNA_P-fluviatile_contig1.563.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=744bp|location=Sequence derived from alignment at P-fluviatile_contig1:6079481..6080164+ (Porterinema fluviatile SAG_2381)
ATGAACACACACCTGCCTTGTTTGGTCGTGTGCGTGTACCGCGATCGAAG
CGTGGACATATGTACCCCAAGCCTTCGATCGAGCAGTGGAACAGAGCAAC
CACGCACAGAGGGAGGAGCCCAACCCGATTCGAAGCCGTCGAGTGTTTCT
GGTACAGCTGCGCCCCGACCAATATTGCGTGATTTGTACAGGCTCTCCTG
TCAAAATAGCCTATTTCACAATGCGGCCGGTGCTGATAAATATCGGCGAG
GCACACGCACACTACTGATGGACCCATCACGAAACGATTGCGGCCACCCG
CAGCGCGCGCATCTAGTGGAAGCGCTCCGACGAGGAGCATCTGCTTTCTG
TTCTGGAATGATCCCGCAATAAATGAACACACACCTGCCTTGTTTGGTCG
TGTGCGTGTACCGCGATCGAAGCGTGGACATATGTACCCCAAGCCTTCGA
TCGAGCAGTGGAACAGAGCAACCACGCACAGAGGGAGGAGCCCAACCCGA
TTCGAAGCCGTCGAGTGTTTCTGGTACAGCTGCGCCCCGACCAATATTGC
GTGATTTGTACAGGCTCTCCTGTCAAAATAGCCTATTTCACAATGCGGCC
GGTGCTGATAAATATCGGCGAGGCACACGCACACTACTGATGGACCCATC
ACGAAACGATTGCGGCCACCCGCAGCGCGCGCATCTAGTGGAAGCGCTCC
GACGAGGAGCATCTGCTTTCTGTTCTGGAATGATCCCGCAATAA
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