|
|
Homology
BLAST of mRNA_P-fluviatile_contig1.549.1 vs. uniprot
Match: D7FGQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGQ0_ECTSI) HSP 1 Score: 209 bits (533), Expect = 8.910e-61 Identity = 101/127 (79.53%), Postives = 117/127 (92.13%), Query Frame = 1
Query: 250 GFGVDPGTFATIIVALLFIFAPGFVFGAFNTLFLVVTLGPILFSVGLNLYSKINLVDAPCPVCGVGLQGLKNKQNQCPNCGTMLMAQNGQFEALGTGYVRDESGTQQEFSRMGDSGVIDVDAIDVDD 630
GF +DPGT ATI LLF+FAPG +FGAFNTLFL +T+GPILFS GLNLY++INLVDAPCPVCGV LQGLKNKQNQCP+CG ML+A++G+FEA+G+GYVRDE+GTQ+EFSRMGDSGVIDVDAIDVDD
Sbjct: 110 GFRLDPGTIATIGFGLLFVFAPGVIFGAFNTLFLTITVGPILFSAGLNLYNRINLVDAPCPVCGVDLQGLKNKQNQCPSCGAMLLAKDGKFEAVGSGYVRDEAGTQREFSRMGDSGVIDVDAIDVDD 236
BLAST of mRNA_P-fluviatile_contig1.549.1 vs. uniprot
Match: A0A836CC93_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC93_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 2.870e-12 Identity = 52/140 (37.14%), Postives = 71/140 (50.71%), Query Frame = 1
Query: 271 TFATIIVALLFIFAPGFVFGAFNTLFLVVTLGPILFSVGLNLYSKIN---LVDAP------CPVCGVGLQGLKNKQNQCPNCGTMLMAQNGQFEALGTGYVRDESGTQQEFSRMGDSG-----------VIDVDAIDVDD 630
++ TI + L I PG FGA N LFL+VTLGP++ + +N++ K N +V C VCG + G K QC +CG++L A NG+FE + + DE F R G +IDVDAIDV D
Sbjct: 93 SYTTIALGLALILFPGVFFGALNALFLLVTLGPVVLIIAVNIFIKANTRLMVQHTLRCRDCCAVCGSTVTGPKEGLTQCFSCGSVLAAVNGKFEVESSIFGGDEDSMSSPFGRDSSRGGASSRGSGAGQIIDVDAIDVTD 232
BLAST of mRNA_P-fluviatile_contig1.549.1 vs. uniprot
Match: A0A2P8VYV0_9CYAN (Uncharacterized protein n=1 Tax=filamentous cyanobacterium CCP5 TaxID=2107701 RepID=A0A2P8VYV0_9CYAN) HSP 1 Score: 57.4 bits (137), Expect = 2.270e-6 Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 1
Query: 316 GFVFGAFNTLFLVVTLGPILFSVGLNLYSKINLVDAPCPVCGVGLQGLKNKQNQCPNCGTMLMAQNGQF 522
G++ + L +++TL PI+ + + + NLV A CPVC L GL N + CPNCGT L A+ GQF
Sbjct: 35 GWIVKSVLVLIVLLTLAPIIGFLAFRWWLQRNLVQAKCPVCSFDLAGLNNTGSVCPNCGTALRAEEGQF 103
BLAST of mRNA_P-fluviatile_contig1.549.1 vs. uniprot
Match: A0A1Z4R4I7_9CYAN (Uncharacterized protein n=1 Tax=Calothrix sp. NIES-4101 TaxID=2005461 RepID=A0A1Z4R4I7_9CYAN) HSP 1 Score: 56.2 bits (134), Expect = 4.680e-6 Identity = 36/114 (31.58%), Postives = 55/114 (48.25%), Query Frame = 1
Query: 283 IIVALLFIFAPGFVFGAFNTLFLVVTLGPILFSVGLNLYSKINLVDAPCPVCGVGLQGLKNKQNQCPNCGTMLMAQNGQFEALGTGYVRDESGTQQEFSRMGDSGVIDVDAIDV 624
++V LL G++ + L ++ L PI+ G + + NLV CP CG L G KN++ QCPNCG +L+ Q+G F R+ G IDV A+++
Sbjct: 21 VVVWLLGSLGLGWLVNSLLILVGLIFLVPIIGFFGFRWWLQQNLVTDKCPACGFELPGFKNRELQCPNCGEVLLVQDGHFH------------------RVAPEGTIDVKAVEI 116
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Bacteria |
| Seed ortholog score | 67.4 |
| Seed ortholog evalue | 6.2e-09 |
| Seed eggNOG ortholog | 197221.22295399 |
| KEGG rclass | RC00613 |
| KEGG ko | ko:K00525 |
| KEGG Reaction | R02017,R02018,R02019,R02024 |
| KEGG Pathway | ko00230,ko00240,ko01100,map00230,map00240,map01100 |
| KEGG Module | M00053 |
| EggNOG free text desc. | bacterial-type flagellum-dependent swarming motility |
| EggNOG OGs | 1GHBI@1117,COG1645@1,COG1645@2 |
| EC | 1.17.4.1 |
| COG Functional cat. | S |
| Best tax level | Cyanobacteria |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03400 |
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-04_001300.1 |
| Exons | 3 |
| Model size | 1640 |
| Cds size | 429 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815351.2419271-UTR-P-fluviatile_contig1:5945155..5946162 | 1622815351.2419271-UTR-P-fluviatile_contig1:5945155..5946162 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 5945156..5946162 - |
| 1693561565.6749866-UTR-P-fluviatile_contig1:5945155..5946162 | 1693561565.6749866-UTR-P-fluviatile_contig1:5945155..5946162 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 5945156..5946162 - |
| 1622815351.2846937-UTR-P-fluviatile_contig1:5950157..5950361 | 1622815351.2846937-UTR-P-fluviatile_contig1:5950157..5950361 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 5950158..5950361 - |
| 1693561565.7132616-UTR-P-fluviatile_contig1:5950157..5950361 | 1693561565.7132616-UTR-P-fluviatile_contig1:5950157..5950361 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 5950158..5950361 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815351.2534678-CDS-P-fluviatile_contig1:5946162..5946310 | 1622815351.2534678-CDS-P-fluviatile_contig1:5946162..5946310 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 5946163..5946310 - |
| 1693561565.6855562-CDS-P-fluviatile_contig1:5946162..5946310 | 1693561565.6855562-CDS-P-fluviatile_contig1:5946162..5946310 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 5946163..5946310 - |
| 1622815351.2659972-CDS-P-fluviatile_contig1:5946917..5947051 | 1622815351.2659972-CDS-P-fluviatile_contig1:5946917..5947051 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 5946918..5947051 - |
| 1693561565.6936612-CDS-P-fluviatile_contig1:5946917..5947051 | 1693561565.6936612-CDS-P-fluviatile_contig1:5946917..5947051 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 5946918..5947051 - |
| 1622815351.2750835-CDS-P-fluviatile_contig1:5950010..5950157 | 1622815351.2750835-CDS-P-fluviatile_contig1:5950010..5950157 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 5950011..5950157 - |
| 1693561565.7034087-CDS-P-fluviatile_contig1:5950010..5950157 | 1693561565.7034087-CDS-P-fluviatile_contig1:5950010..5950157 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 5950011..5950157 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.549.1 >prot_P-fluviatile_contig1.549.1 ID=prot_P-fluviatile_contig1.549.1|Name=mRNA_P-fluviatile_contig1.549.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=143bp
MMVFGGGGGGRRGGGGFGVDPGTFATIIVALLFIFAPGFVFGAFNTLFLV VTLGPILFSVGLNLYSKINLVDAPCPVCGVGLQGLKNKQNQCPNCGTMLM AQNGQFEALGTGYVRDESGTQQEFSRMGDSGVIDVDAIDVDD* back to topmRNA from alignment at P-fluviatile_contig1:5945156..5950361- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig1.549.1 ID=mRNA_P-fluviatile_contig1.549.1|Name=mRNA_P-fluviatile_contig1.549.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5206bp|location=Sequence derived from alignment at P-fluviatile_contig1:5945156..5950361- (Porterinema fluviatile SAG_2381) GTTGCAGCACCAAGCTCGGCGTTTGTTCATGTACGCCCTGCGTTGCTCAG
GAGCACGAGCGGCGGCCGCAGGGCATCCATAAATACGTCTCAAGTCCATG
CCCATTCGGGAGGGTTCAGCCGCGAGGTGATCTTGCAGGGGAGGTCATCA
GCAGAGATTGCATTGGGAATCCATGCAAGGCGATCTCGGCGAAGGCAACA
CACGATGATGGTGTTTGGCGGCGGAGGGGGCGGTCGCAGGGGGGGTGGAG
GCTTCGGGGTTGACCCCGGGACGTTCGCGACGATTATCGTCGCGCTGCTA
TTCATCTTTGCTCCAGGATTCGTCTTCGGCGCGTTCAACACGCTCTTTTT
GGTGAGAAAGTCAAACCACATAACACTAAACGTGCTGAACCACACCGGCC
TTGGACCCGCAACAAGGGAGAGGGCAGAAAAAGCAGACACCCACTCTCTC
TTCCACGACCGTCACGCAACGAGGTTCCGCTGTGACTACTGTACGTCACC
CACGATAGTCTGGTCTCATGTAAAACTTCGAGGCTTTGTGTTTGGCGGGC
ATCCTCTACATCCTCGCGCCTTCGTTGTTTTTGTGAGGGAGGCGCGTCTG
TGGGACACGGTTAGCAGCCATTTTGAATTCAAAATTTGCGCGTTGTGCAC
GGTCTTTGTGCCCCCCTTTTCTGCTGAGGGCGCTCCCCAACTCTGCGGAC
CAATGTACAGCATTAGAACACGCAGCTCAGCACGTATGCTACTACCAGAG
TATCGCATCCAAGGTTCCAGGGCAATGCTCAGCGTATGGCAGCGGGAAGT
ATCTCTGGTTGACTCAGCTGCTCACGGCGCCTCCCGACACGTGGAGAGGT
TAACCTCAAGGCGGGAAGGGGGGGTGTACTCATGAAAACGCATGCCGTAG
TCGGTCAGACCATAGACCTCGCGTCACCTACAATGCCGGGACGGAGCGAT
ACGCCGGGTTTTCGCCGGCCAGGCGCCGAAGGGGGCGTACTCATGTTTTG
CATGCCTTAGTTGTTAGACCATTGACCACGCGTCCTCGAGAGGACGGAGC
AAGGGGGTACTTAAAGTCGTGCATGCCGTAGTCGTTAGACCATTGACCCC
GCATCCCTACAAAGCCGGGACGGAGCACGCCGGGTTCTCACCGGACCAGG
CTCTCACACCACCAAGCGCGAAGCGCCGTGAGGTATTCGGCGAGTCGCAT
GAAGGGTGCGCTGCATCCTGCTAAGGGTTTTCGGCATCTTGTGTTTACTT
CCTTGCATACGGATGACAGCTGCGTATGGCTTAATTTATTTTTTTTGGGG
GGGGGCGTACTCATGTTTTGCATGCCTTAGTTGTTAGACCATTGACCACG
CGTCCTCGAGAGGACGGAGCATTGTTCCCGCAGCGGGAAGGGGAGGGGGG
TAAGCCGGCCGAATCGTCGCAGGGATAGTTTTTTGTTAAAAATCATTTTT
TCCAACTGAAAGGCTTTCACATCGGCACAAATCTTTGCAAAATTGAAAAG
TTGAATTCTATCGAGTGTTACAAATTGTCGAGTTTTGCGTGGAAGTGACG
TGGAAATTCTGAAAGCCCGGATTATCTTCGGGATAATCTTTAACCTGCAA
GTGCGAGCAGATCATGCTACTTTTGTTTTTCCATTTCGCGACAACAAAGT
GCCAGCACCGGCGCGCACAATGGTATTCTTGGCAGCATATGCTTTGTTTC
TGAGCCGCCAGATCGACATCTTGTTTGCTATGATTTGGTAGGGGCTTGAC
ACCTCGCGACCCTGATGTCAAGCCGATTGTTACAGCAGTGCCACTGAGGG
TCTCCGTGTGCAGTCCCGCCCTGCCGCTGACCAACATTAATATCTGGTCG
AAAACACATAGGTATCATATGGGCGTCCCTTCTTTTCAAGGAGTTGACAT
AAAGAGCACCCCCGTAGAAGAGCACATGGGATGCACCAGGTCTTGGTGGG
GGCGTTCTCGAAGGACAATTTGGGCAATCCCGTCCAGCGCGCTCCGGTCT
CGGCCACCTTTGTTGACTTTCTACTGGTTTCGAGGTCTTCTGACGTGTGC
TCCGTGGTAATCCGGGAGTACCCGAGCCTCACTTTCTTAGTTCTCCGTCT
ATCCACTAAGGCCACCAGAGGGACGTGCTTTCAAAAGATGTGAAGCACGA
AGACGAGTGTGGACAAGATTTTTTTGTTTGTCTGCGTCGGTGCACGTCTT
GTAGATTATCTCCTTCCTGCAAACGTTCGTGATCGCTAGACCATCGTAGA
CTCGGATGTGGACATCGATGGAAATTCCCGGAATGCCTTCACCTGGCAAA
TGGGACACCAGTGGCGGAATTTTTGTCGCGTCCGAAGTTTTCCACGCCCT
CTTCAGATGTTCGCATTCAATTCACCACGTGCACAACAATTCCCCCGCGC
CGCAAGCAGTCGCCATCGCGACCATACGCCTTTTGCCGTGAGCAGCACCG
CCGTGCGGCCCCCATCCCACACGTACGAAGCCTTTTTGGACGGACCACCC
TGTCATTCCACAGGGCCCACCTGCCAAAAGCGAGCCAATTTTATGAGCCG
TGCTTGTAAAATGGACCACTTGCTCAGCTCCTTTCGCAGCTTGTTGGGTG
TGTCTAGCAGATCGTTATCGTGTCTTGGCCCAAACACCCGAGCGTTGACA
ATCAGGCGCGTTGACAATCAGGCGCGTCTTACGGGTGCACGGAGAGATTC
CCGCGCGGCGCCTACGTGCTCAGAATTTTTTCCGTGTTGGGACGCCGGGG
GGCAATTCGATGCGGTTTTCCATGTTTTGAAGCCGAAAACCTTCTGCCTG
TCGTCAAGCCCCTCCGAAAATTGGCGGCGAACGCGCGGTGTGTGCTTGGG
GGGCCGAGCTGAACCGCAGATGATGCTGTCGCAAAAATGCTTAGAGGGGC
CTGTTCGCTTCTTGGCGGCGCCTTGCCTGAAAATGTTTGGAACAAGGGTC
GTTTCGCTGCTTCGAGTGCCGCTCCTTGTGCAACACCTCTTGCGTTCAAA
CTACGTCGCACCGTGCCCTCCCTCTTTGTTGCGAATCCTCATTTGGTTGC
CGACCTGCTGTCGACAAGTGAGAGCGAAGCATCTTTTGGCATCACAATAT
GCACACTTTGCGCCTTGATTTATCAAAAGTTGGAGGTCATCCTACAGAAT
TTGTCGGTAGTGGTTCCCCCGACTTCCTTGTTGCCGAGCTTAATTAATTT
GTTTTCGCCAATTATTCGCCAACGGGCTCTCTCGCCGCGGAGCGTGTGTC
ACTGTGTGCTTACCCGTACGTCAAATCCTGCGGCGCGCCCGTGCGTCATT
TGTCGTCCAGGTGGTTACGCTCGGGCCTATATTGTTCTCCGTCGGGCTCA
ACCTGTACAGCAAGATTAACCTCGTCGATGCGCCGTGCCCCGTTTGCGGC
GTGGGGCTGCAGGGGCTCAAGAACAAGCAAAACCAGTGCCCCAAGTGAGA
AGAACCCGGGCGTGAAGTACGCAGGCGTAAAGCTCAATTTTGCTCCCCGA
AAAAAAAATCCGGAAATAGCCCGCCTCGATTGTTTTGTTCGCGTCGGCAT
GGCATCCACTAGGGCGTTGGGGCTAGCAACGGTTGATTTTGCACCCGGGG
CACCTTGTATGAAGCGAAAATGGCGCGTTTAATGATCGAGCCAAGAACAC
TGTGTGTCTTCGCAGGGGCGTTGACTTCACAATGCCAAGGTATCGAGGAG
GATGAACTTTACGCATCCTCTGCTATCGAAAACCGCTGAATGTTCAGATG
GCTTTCCTCTCCAACTAGTTAAGGGCGATTCCAATCTTTGGTATCAAGCG
TTGTCGCGATTCCTATCCTGACGAAGAGATGTGTTTCCAGCATTTCGTCC
CAACACTACAACTCGGTTGCACTCTTAACGGGCCAAGGGTTGTATCTCTC
CGAGTTGTTCTGCGAACCTGCGCCCAAATATTCGTGTAGTTTGTTCGTGG
AATCTCATCCATGCTCTCTCCATCTCCCCCTGCTCTATCTCTCGGCTATT
GCTTTGATTTTCTCTCCCCCCCTCTCTTGCCACACCTGCGCTTGTGCCCA
GTTGCGGGACGATGCTCATGGCGCAAAACGGCCAATTCGAAGCATTGGGG
ACCGGCTACGTGCGGGATGAGAGTGGGACGCAGCAGGAGTTCTCGCGCAT
GGGCGACAGCGGGGTCATAGACGTGGACGCGATAGATGTGGACGACTGAC
GGCCGTGCGATGTTGCCGGGATCATCACGGTTTTGAGTAGCTTTAGAGGG
GCCAACGGCCCATTGAGGGAATTGCTTCGCCGTGGCTCATCACATTTGAG
CGCGTGCACGAAGGTTGAACCATTTCGTCGACGATAGATCTCACGCACAA
GGAATCATATATCACAAAGGTGCGAGACGCACGCCGTGACAGCTACCGCT
GCAGCTGCTGATCGTAAATCACAAGGTTTCGGCAGCAGGTCTTGAAAGTC
GAACTACGACAGAGAGAAGGTGGATGAGAGGGACGATCCGCGCTCGTGCT
GCGTTCTAGGAAGTACAGCCCCATGGAGTAAGTTCAGCGTCTTAAAGGTG
GGGCAGATCTACAGCTTTATATTTGCCGTGGTTTTGTTGTTTGCGATGTG
TCGTTGCGTTGAGGATGCCTAACTGAGTGGAGCAAGCCTGCAGGCACGCG
GATTGACGAGATCTAGATGTGTGCGTTGTTCTTGTGCTCGTCCTGGCGGC
CGGCTAAAGGACCGCTTTGTGAGGTATCCAACAAGGACAGGCAGCTGTGA
TATACCGGACGGCCCAGTTTTAGTGTTGGAACTTCAATGTAGGTGCAGAG
GATTCAAATCCACCGTTGCTTGAAACAACTATGACTTTATGTAGACTTGC
TGATGAGGTTGGGTTGCGCGCGATTTGCGGCCGGAGCTGCCGTTGCTAGC
ACAGTCGATGCTGAGGTAATGTTTAGGAGTTGGCCGGTGGTTGCAAGCAA
ATAGAGGAGGGCAGAAGAGTGTTTTTTTTCAGCAGACATGATCGATCTGC
TTTGTGTGTGAGGCTGGTAGACGCATTATTTCACATGCACGACGCCAGAC
CTGGTGTTGATGAGCAGCTGTGATACTCGAACCGCTGATGAGCGAGACAA
GGGGACAACGCTGAACAACATGCACGACGCATACTCCTAGACGTGCAAAT
GTCGTGGACAAAACTCAGTAGTCTATATGCTCTACACCTCGAGGCGATGT
CACGGT back to topCoding sequence (CDS) from alignment at P-fluviatile_contig1:5945156..5950361- >mRNA_P-fluviatile_contig1.549.1 ID=mRNA_P-fluviatile_contig1.549.1|Name=mRNA_P-fluviatile_contig1.549.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=858bp|location=Sequence derived from alignment at P-fluviatile_contig1:5945156..5950361- (Porterinema fluviatile SAG_2381) ATGATGGTGTTTGGCGGCGGAGGGGGCGGTCGCAGGGGGGGTGGAGGCTT CGGGGTTGACCCCGGGACGTTCGCGACGATTATCGTCGCGCTGCTATTCA TCTTTGCTCCAGGATTCGTCTTCGGCGCGTTCAACACGCTCTTTTTGATG ATGGTGTTTGGCGGCGGAGGGGGCGGTCGCAGGGGGGGTGGAGGCTTCGG GGTTGACCCCGGGACGTTCGCGACGATTATCGTCGCGCTGCTATTCATCT TTGCTCCAGGATTCGTCTTCGGCGCGTTCAACACGCTCTTTTTGGTGGTT ACGCTCGGGCCTATATTGTTCTCCGTCGGGCTCAACCTGTACAGCAAGAT TAACCTCGTCGATGCGCCGTGCCCCGTTTGCGGCGTGGGGCTGCAGGGGC TCAAGAACAAGCAAAACCAGTGCCCCAAGTGGTTACGCTCGGGCCTATAT TGTTCTCCGTCGGGCTCAACCTGTACAGCAAGATTAACCTCGTCGATGCG CCGTGCCCCGTTTGCGGCGTGGGGCTGCAGGGGCTCAAGAACAAGCAAAA CCAGTGCCCCAATTGCGGGACGATGCTCATGGCGCAAAACGGCCAATTCG AAGCATTGGGGACCGGCTACGTGCGGGATGAGAGTGGGACGCAGCAGGAG TTCTCGCGCATGGGCGACAGCGGGGTCATAGACGTGGACGCGATAGATGT GGACGACTGATTGCGGGACGATGCTCATGGCGCAAAACGGCCAATTCGAA GCATTGGGGACCGGCTACGTGCGGGATGAGAGTGGGACGCAGCAGGAGTT CTCGCGCATGGGCGACAGCGGGGTCATAGACGTGGACGCGATAGATGTGG ACGACTGA back to top
|