mRNA_P-fluviatile_contig1.535.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig1.535.1
Unique Name	mRNA_P-fluviatile_contig1.535.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig1.535.1 vs. uniprot
Match: D7FGR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR8_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.650e-58
Identity = 98/139 (70.50%), Postives = 115/139 (82.73%), Query Frame = 1

Query:    1 AGIVEDIGTFLLPPQDQSKEISIGDFDREISYENFQRALLKGDVTKCNFFGANFDKAVIVLKDGTKALIGEGYPQERAFSDDSPMKVVGLLRNAGVPFTTDFGGTTSRMYPKQKVYKSAATLEAEKRQKSEDETLEALM 417
            AGI +DIG FLLPPQ+Q  EI +G+ D+E+S+E+F+RALLKG+V +C FFG NFDKA+IVLKDGT+ALIGEGYP+ERAFSDDSPMKVVGLLRNAGVPFTT+F       Y K K YKS+ TLEAE RQKSED  L+ LM
Sbjct:  127 AGIGQDIGGFLLPPQNQPTEIVVGESDKEVSFEDFERALLKGEVARCEFFGPNFDKAIIVLKDGTRALIGEGYPEERAFSDDSPMKVVGLLRNAGVPFTTEF---RMAKYSKPKSYKSSETLEAENRQKSEDAVLDRLM 262

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BLAST of mRNA_P-fluviatile_contig1.535.1 vs. uniprot
Match: A0A6H5JKU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU5_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.890e-56
Identity = 97/137 (70.80%), Postives = 112/137 (81.75%), Query Frame = 1

Query:    7 IVEDIGTFLLPPQDQSKEISIGDFDREISYENFQRALLKGDVTKCNFFGANFDKAVIVLKDGTKALIGEGYPQERAFSDDSPMKVVGLLRNAGVPFTTDFGGTTSRMYPKQKVYKSAATLEAEKRQKSEDETLEALM 417
            I +DIG FLLP Q+Q  EI +G+ D+E+S E+F+RALLKG+V +C FFG NFDKA+IVLKDGT+ALIGEGYPQERAFSDDSPMKVVGLLRNAGVPFTT+F       Y K K YKS+ TLEAE RQKSED TL+ LM
Sbjct:  125 IGQDIGGFLLPSQNQPTEIVVGESDKEVSLEDFERALLKGEVARCEFFGPNFDKAIIVLKDGTRALIGEGYPQERAFSDDSPMKVVGLLRNAGVPFTTEF---RMAKYSKPKSYKSSETLEAENRQKSEDATLDRLM 258

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BLAST of mRNA_P-fluviatile_contig1.535.1 vs. uniprot
Match: A0A835YGS7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGS7_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.140e-25
Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = 1

Query:   79 DREISYENFQRALLKGDVTKCNFFGANFDKAVIVLKDGTKALIGEGYPQERAFSDDSPMKVVGLLRNAGVPFTTDFGGTTSRMYPKQKVYKSAATLEAEKRQKSEDETLEALMAQ 423
            ++ +SY  F + L K ++    F+G+ +D+ V+ L DGT+A IGEGYP+E   +D+SP+KVV  LRNAGVP+  DF     R Y   K YKS  TL AE RQ+ ED  +E  MAQ
Sbjct:    6 EKLVSYAEFNQLLFKREIASAKFYGSKYDRCVLTLLDGTEARIGEGYPRESPATDESPLKVVAQLRNAGVPYKVDFN---LRGYTYLKSYKSRETLAAEDRQRDEDSRIETRMAQ 117

[Close]

BLAST of mRNA_P-fluviatile_contig1.535.1 vs. uniprot
Match: A0A7S0YV26_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YV26_9CRYP)

HSP 1 Score: 57.8 bits (138), Expect = 2.140e-7
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 1

Query:   79 DREISYENFQRALLKGDVTKCNFFGANFDKAVIVLKDGTKALIGEGYPQERAFSDDSPMKVVGLLRNAGVPFTTDF 306
            +  +S++ F   L  G V + +F+G + DKA    KDG K  IGEG+P E      SP+ VV LL + GVP+   F
Sbjct:   14 EESVSFKEFFDGLNAGRVERVDFYGYSGDKAYATFKDGKKIRIGEGFPVEIGNEASSPLFVVKLLGDKGVPYKFHF 89

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig1.535.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig1.535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7FGR8_ECTSI	1.650e-58	70.50	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JKU5_9PHAE	1.890e-56	70.80	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835YGS7_9STRA	2.140e-25	46.96	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S0YV26_9CRYP	2.140e-7	39.47	Hypothetical protein n=1 Tax=Hemiselmis tepida Tax...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig1	contig	P-fluviatile_contig1:5796579..5799330 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	64.3
Seed ortholog evalue	2.1e-08
Seed eggNOG ortholog	2880.D7FGR8
EggNOG OGs	2F0SQ@1,2T1WE@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	no signal peptide or anchor
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-04_001120.1
Exons	4
Model size	714
Cds size	174
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig1.535.1	prot_P-fluviatile_contig1.535.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig1 5798195..5799042 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815349.218608-UTR-P-fluviatile_contig1:5796578..5796707	1622815349.218608-UTR-P-fluviatile_contig1:5796578..5796707	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 5796579..5796707 +
1693561563.6012852-UTR-P-fluviatile_contig1:5796578..5796707	1693561563.6012852-UTR-P-fluviatile_contig1:5796578..5796707	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 5796579..5796707 +
1622815349.2307012-UTR-P-fluviatile_contig1:5797527..5797596	1622815349.2307012-UTR-P-fluviatile_contig1:5797527..5797596	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 5797528..5797596 +
1693561563.6105173-UTR-P-fluviatile_contig1:5797527..5797596	1693561563.6105173-UTR-P-fluviatile_contig1:5797527..5797596	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 5797528..5797596 +
1622815349.242834-UTR-P-fluviatile_contig1:5798140..5798194	1622815349.242834-UTR-P-fluviatile_contig1:5798140..5798194	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 5798141..5798194 +
1693561563.6182134-UTR-P-fluviatile_contig1:5798140..5798194	1693561563.6182134-UTR-P-fluviatile_contig1:5798140..5798194	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 5798141..5798194 +
1622815349.272008-UTR-P-fluviatile_contig1:5799042..5799330	1622815349.272008-UTR-P-fluviatile_contig1:5799042..5799330	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 5799043..5799330 +
1693561563.6533835-UTR-P-fluviatile_contig1:5799042..5799330	1693561563.6533835-UTR-P-fluviatile_contig1:5799042..5799330	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 5799043..5799330 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815349.2541785-CDS-P-fluviatile_contig1:5798194..5798293	1622815349.2541785-CDS-P-fluviatile_contig1:5798194..5798293	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 5798195..5798293 +
1693561563.625809-CDS-P-fluviatile_contig1:5798194..5798293	1693561563.625809-CDS-P-fluviatile_contig1:5798194..5798293	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 5798195..5798293 +
1622815349.2631514-CDS-P-fluviatile_contig1:5798967..5799042	1622815349.2631514-CDS-P-fluviatile_contig1:5798967..5799042	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 5798968..5799042 +
1693561563.6350832-CDS-P-fluviatile_contig1:5798967..5799042	1693561563.6350832-CDS-P-fluviatile_contig1:5798967..5799042	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 5798968..5799042 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig1:5796579..5799330+
coding sequence from alignment at P-fluviatile_contig1:5796579..5799330+

protein sequence of mRNA_P-fluviatile_contig1.535.1

>prot_P-fluviatile_contig1.535.1 ID=prot_P-fluviatile_contig1.535.1|Name=mRNA_P-fluviatile_contig1.535.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=58bp
MKVVGLLRNAGVPFTTDFGGTTSRMYPKQKVYKSAATLEAEKRQKSEDET
LEALMAQ*

mRNA from alignment at P-fluviatile_contig1:5796579..5799330+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig1.535.1 ID=mRNA_P-fluviatile_contig1.535.1|Name=mRNA_P-fluviatile_contig1.535.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2752bp|location=Sequence derived from alignment at P-fluviatile_contig1:5796579..5799330+ (Porterinema fluviatile SAG_2381)
GCAGGGATCGTTGAAGACATAGGCACCTTCTTGCTGCCTCCCCAGGATCA
GTCGAAGGAGATCTCGATCGGAGACTTCGACAGAGAGATTTCCTACGAGA
ATTTTCAACGGGCGCTATTGAAGGGAGATGTGAGCAATCCACAAGAGGAT
ACACCGATGGAGATGATATTCCGAAAAGTGGTTGCTCCAGTTGAAGGCCA
AAAAATGCTGGCGGGGGTAGGGTGTGAGGGTAGGAAAGGACGCGACCCAA
CAAAGTCACAGCAGAGACGCATGTTCAACATCGAACTGTAGACACATGGG
AGGAGAGCAACATCACAGCTTTCCGGGCGGTAACCTGCTTGTGTAGCACC
TGATTGACCCCCTTGCTGCATTCCTGGGGGGATAGGGAGTTTTGTGCGCC
CCCGTTCGCCCGTAGGAAGAAGCCTCTCTACTGGTGAGCAGTAATATATC
GGGCTGCCAAAAGCTCGAATGCTGTACCCAAGGATTTAGTCAACTGACGT
ATTGTCGAGCTGTCGAATGCATCCAACTAAAGGAGACCGGCCGAGAAGTG
GAAGACCGTCGTACCGACGCGCCGACGTAAGAGTTGTCATGGAATGAGGC
ATTCTCCCCATCAAGGCGCCGTTGCTTGTTGGGCTGGCAGGCACCAACTG
CCCAAAATCTGGTCTGCGCTGACGCGCTGCGGTCGCACAGTGACGTCTGT
CCCTCCTCCTGTCTTGCGCGTCTTGCGTTAGCGCTGGCCTTCCACGGCCT
TTCTTGCGACCTATGCCGGCTGCCCAAGAATTTTCCCCTCCAGAGCAGCA
GGGGAAGTTCGTCTCTTCAAGCCTTCGTAGCGATTGGCACGACTAGGCCA
TTGGCATGTTGTGGAACTTCGTGTGCCAATCATCCGTCCCTACAGCCTCA
CCACCTCCTTCGTTTCTGCGGATGGCGCTTGGTACCCCTTTCCCTTCAGG
TGACCAAGTGCAACTTCTTTGGCGCAAATTTTGACAAGGCTGTCATCGTC
CTGAAAGACGGCACCAAGGTGTGTTGTGCTAATATCACCTTGCTGTGGAT
GGGGATGATGTTGCAGAAAACTGGTTTCCAACGTACCTAGTACCTTCTCC
CGGTTTTGGGTGCTTTCGGTGAATTTGTCGATGTTGGGACTTGGCAGCTG
GTAGTGCAGGTGACGATGTAAGTTCTTTTGGGCGGCCTGGTCGCTGTTCC
CTCTCTTTTATTTGATGCTGTGTCCCCCCCTCCACCCCCCAGTCCGCACA
AAAAGGGTGGCCACAAAGACGACATATGCGAGAGGGGTTCCGTAATACAC
GTTTTGTTTTTAGTTGTATCTCGAGCATGGACACGGCGTAGACGAGTGCC
CAAACGATGTTGGGTTGTACCGTTTGACAGCGAGACCGGTGGTCTGTCTC
TAAAGGAACGCGAGGTATGTGGTTGGACAACCAAAGCGAGCCACCACCGA
ACATGTACCCCGCACCTTTCTCTTTCGAAGCTGTTTCCAGCACCCTCCGC
GTGCTTGGGTTACAGCTTGGGTAACATCATTCTCCCGCCGCGCACTGAAA
AAAAAAACAAAGGCGCTGATCGGCGAGGGCTACCCTCAGGAACGAGCATT
CAGCGACGACAGCCCGATGAAGGTCGTTGGCCTCCTGAGGAACGCAGGGG
TGCCCTTCACGACCGACTTCGGTGGGACCACGTCGCGAATGTATCCCAAA
CAAAAAGTTTACAAGGTGAGACGCCTAAATAACCAACCCGTGTGCCTTCC
CCCCCCCCCGTCTGCGGGATTTCCTTCTTGCTGTCTTGCTCTCGTCCTCC
CTGCTCGTGGGCACGAGCGTGTTTTGAATGGAGCTCTCACGCAGAGCCAT
TGACGTGACAGACGGGGGTGGCGATGCAACCACAGTCGTTCGTCAGCGAC
AGCCGTGCCTGAGAGAGCCGGTTCCTTTCCCTCGAGCCGACAGCGAAAAC
TTGTGCGGATCAAGTCTCCGTGAGAGCAAGGGACCACTTTCATATGGAAT
GTTACCTTTGGACGAGCATCGAGCACGGGGGGAATGCGCAATGTGATGCG
GGGCGGAAGGATGTGTCAGCTCTCATTGCTCTCGCGCGCTTTGGTGATAT
CCCCCCACCACTCCCCATCCCACCTCCCCTCTAACCCCGGTTGGTTTGAT
GACCTCATACCCAGGGCACGAGTGTAAGCCCCACCCCCTTCATCGCACCA
AAGTGTTTGTCTTACCTCTGCTGCCGTTTTTGATAAGCTGTCTAGCTGCT
CGCCCGTTCTGCGCCTTGCACCGTGGCGATCCGACTTGCTCGCACTCTCA
GATAGTCGGAACCGAAATCGCTCATGTGAACTTTTTTTTTTTTTTTTTTT
ATTCAACCAACCCTTACCGCCAATCGATCAAAATATCAGAGCGCGGCGAC
CCTGGAGGCCGAAAAGAGACAGAAATCGGAAGACGAAACGCTCGAGGCGC
TAATGGCGCAGTAGGGGGAGGGTTGTCGACACCGTGGGCGGGAGGGGAGT
TCGGGCCCTGCGGACCAGATGGTGTGGCGCAGAGATGAGCAGGGCAGAGG
GAGGATTGTTGTACAACACGGCAGCTGCCGTCGAACACCTGCTTTTTGAG
CATCCACGTCTCACAACAGGCGCTCCGCCGCTTCACGCGGTGATCGCGCT
TTCGTGCGCAGCAGAAGTTGGGAGTTCCAGGCCGTGTGGACCGCGTGGAG
AAGGATGACCCTTTCTCTTTTTTTTTGGCAGCGGGCTTAAGCGGAAGCAT
GT

Coding sequence (CDS) from alignment at P-fluviatile_contig1:5796579..5799330+

>mRNA_P-fluviatile_contig1.535.1 ID=mRNA_P-fluviatile_contig1.535.1|Name=mRNA_P-fluviatile_contig1.535.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=348bp|location=Sequence derived from alignment at P-fluviatile_contig1:5796579..5799330+ (Porterinema fluviatile SAG_2381)
ATGAAGGTCGTTGGCCTCCTGAGGAACGCAGGGGTGCCCTTCACGACCGA
CTTCGGTGGGACCACGTCGCGAATGTATCCCAAACAAAAAGTTTACAAGA
TGAAGGTCGTTGGCCTCCTGAGGAACGCAGGGGTGCCCTTCACGACCGAC
TTCGGTGGGACCACGTCGCGAATGTATCCCAAACAAAAAGTTTACAAGAG
CGCGGCGACCCTGGAGGCCGAAAAGAGACAGAAATCGGAAGACGAAACGC
TCGAGGCGCTAATGGCGCAGTAGAGCGCGGCGACCCTGGAGGCCGAAAAG
AGACAGAAATCGGAAGACGAAACGCTCGAGGCGCTAATGGCGCAGTAG