mRNA_P-fluviatile_contig1.534.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.534.1
Unique NamemRNA_P-fluviatile_contig1.534.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5790276..5790588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.0421808-CDS-P-fluviatile_contig1:5790275..57905871622815271.0421808-CDS-P-fluviatile_contig1:5790275..5790587Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5790276..5790587 +
1693561323.3314176-CDS-P-fluviatile_contig1:5790275..57905871693561323.3314176-CDS-P-fluviatile_contig1:5790275..5790587Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5790276..5790587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.534.1prot_P-fluviatile_contig1.534.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5790276..5790587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.534.1

>prot_P-fluviatile_contig1.534.1 ID=prot_P-fluviatile_contig1.534.1|Name=mRNA_P-fluviatile_contig1.534.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=104bp
VNIRKVTVQLLLSSPPAEPPPDTLIHSGGETKSPQPNHITSRHLSRESII
TAITVEVHAREGGYSHLSSYDIRSKKFNKNFSTEGVRKRPNYRNQPATPT
PRIP
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mRNA from alignment at P-fluviatile_contig1:5790276..5790588+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.534.1 ID=mRNA_P-fluviatile_contig1.534.1|Name=mRNA_P-fluviatile_contig1.534.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=313bp|location=Sequence derived from alignment at P-fluviatile_contig1:5790276..5790588+ (Porterinema fluviatile SAG_2381)
GTCAACATCCGTAAAGTCACCGTACAACTCCTGCTGTCGTCACCACCAGC
AGAACCACCACCCGACACACTCATACATAGCGGCGGAGAGACAAAGTCAC
CACAACCCAACCACATCACCTCTAGACACCTCTCCCGCGAGAGCATCATC
ACAGCGATCACGGTTGAGGTACATGCCAGGGAGGGGGGGTATTCCCATTT
GTCGTCTTATGATATACGGAGTAAAAAATTCAATAAGAACTTCTCGACCG
AGGGGGTTCGAAAAAGGCCCAACTATCGAAATCAACCAGCCACGCCCACA
CCTCGAATCCCTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5790276..5790588+

>mRNA_P-fluviatile_contig1.534.1 ID=mRNA_P-fluviatile_contig1.534.1|Name=mRNA_P-fluviatile_contig1.534.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=624bp|location=Sequence derived from alignment at P-fluviatile_contig1:5790276..5790588+ (Porterinema fluviatile SAG_2381)
GTCAACATCCGTAAAGTCACCGTACAACTCCTGCTGTCGTCACCACCAGC
AGAACCACCACCCGACACACTCATACATAGCGGCGGAGAGACAAAGTCAC
CACAACCCAACCACATCACCTCTAGACACCTCTCCCGCGAGAGCATCATC
ACAGCGATCACGGTTGAGGTACATGCCAGGGAGGGGGGGTATTCCCATTT
GTCGTCTTATGATATACGGAGTAAAAAATTCAATAAGAACTTCTCGACCG
AGGGGGTTCGAAAAAGGCCCAACTATCGAAATCAACCAGCCACGCCCACA
CCTCGAATCCCTGTCAACATCCGTAAAGTCACCGTACAACTCCTGCTGTC
GTCACCACCAGCAGAACCACCACCCGACACACTCATACATAGCGGCGGAG
AGACAAAGTCACCACAACCCAACCACATCACCTCTAGACACCTCTCCCGC
GAGAGCATCATCACAGCGATCACGGTTGAGGTACATGCCAGGGAGGGGGG
GTATTCCCATTTGTCGTCTTATGATATACGGAGTAAAAAATTCAATAAGA
ACTTCTCGACCGAGGGGGTTCGAAAAAGGCCCAACTATCGAAATCAACCA
GCCACGCCCACACCTCGAATCCCT
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