mRNA_P-fluviatile_contig1.520.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.520.1
Unique NamemRNA_P-fluviatile_contig1.520.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5692185..5692684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size500
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.520.1prot_P-fluviatile_contig1.520.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5692214..5692576 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.8833413-UTR-P-fluviatile_contig1:5692184..56922131622815270.8833413-UTR-P-fluviatile_contig1:5692184..5692213Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5692185..5692213 +
1693561323.189653-UTR-P-fluviatile_contig1:5692184..56922131693561323.189653-UTR-P-fluviatile_contig1:5692184..5692213Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5692185..5692213 +
1622815270.9059436-UTR-P-fluviatile_contig1:5692576..56926841622815270.9059436-UTR-P-fluviatile_contig1:5692576..5692684Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5692577..5692684 +
1693561323.2098722-UTR-P-fluviatile_contig1:5692576..56926841693561323.2098722-UTR-P-fluviatile_contig1:5692576..5692684Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5692577..5692684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.8933265-CDS-P-fluviatile_contig1:5692213..56925761622815270.8933265-CDS-P-fluviatile_contig1:5692213..5692576Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5692214..5692576 +
1693561323.2004917-CDS-P-fluviatile_contig1:5692213..56925761693561323.2004917-CDS-P-fluviatile_contig1:5692213..5692576Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5692214..5692576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.520.1

>prot_P-fluviatile_contig1.520.1 ID=prot_P-fluviatile_contig1.520.1|Name=mRNA_P-fluviatile_contig1.520.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=121bp
MRTGKRYHPFWGSSWRASVNACVANVRVFVGPLFPFVVAFGKPEKAAFKE
SHQDEETNKQDKAGVLAKVLFAFFLCFGMFLAGEFRDQHVNAGARRDLPF
FVWYGRRSAGIGRCRHSKVP*
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mRNA from alignment at P-fluviatile_contig1:5692185..5692684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.520.1 ID=mRNA_P-fluviatile_contig1.520.1|Name=mRNA_P-fluviatile_contig1.520.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=500bp|location=Sequence derived from alignment at P-fluviatile_contig1:5692185..5692684+ (Porterinema fluviatile SAG_2381)
ACATAATCGCGGATGAGGTAATTGTCGACATGAGAACCGGAAAACGATAC
CATCCCTTTTGGGGATCTTCTTGGCGTGCGTCTGTAAACGCATGTGTCGC
CAATGTACGTGTGTTTGTGGGTCCTCTGTTCCCGTTCGTTGTCGCTTTTG
GGAAACCAGAAAAAGCAGCTTTTAAGGAATCACATCAGGACGAAGAAACG
AACAAACAAGATAAAGCGGGAGTTCTTGCCAAAGTTTTGTTTGCGTTTTT
TTTGTGTTTCGGTATGTTTTTAGCGGGTGAATTTCGAGACCAACATGTGA
ATGCCGGAGCGAGGAGAGACCTGCCTTTCTTTGTTTGGTACGGAAGGCGA
TCGGCTGGGATAGGTCGGTGCAGGCATTCGAAGGTACCGTGAGGTGTCTG
CAAAGGTTTGCGATGGTAACTCGTCGTCAACAACAACCACAAGACTGCCG
AACAATCCGTTTCCACGGCCGATTCGAGCTCCGAGGAGGGCCGAAATCGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5692185..5692684+

>mRNA_P-fluviatile_contig1.520.1 ID=mRNA_P-fluviatile_contig1.520.1|Name=mRNA_P-fluviatile_contig1.520.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=726bp|location=Sequence derived from alignment at P-fluviatile_contig1:5692185..5692684+ (Porterinema fluviatile SAG_2381)
ATGAGAACCGGAAAACGATACCATCCCTTTTGGGGATCTTCTTGGCGTGC
GTCTGTAAACGCATGTGTCGCCAATGTACGTGTGTTTGTGGGTCCTCTGT
TCCCGTTCGTTGTCGCTTTTGGGAAACCAGAAAAAGCAGCTTTTAAGGAA
TCACATCAGGACGAAGAAACGAACAAACAAGATAAAGCGGGAGTTCTTGC
CAAAGTTTTGTTTGCGTTTTTTTTGTGTTTCGGTATGTTTTTAGCGGGTG
AATTTCGAGACCAACATGTGAATGCCGGAGCGAGGAGAGACCTGCCTTTC
TTTGTTTGGTACGGAAGGCGATCGGCTGGGATAGGTCGGTGCAGGCATTC
GAAGGTACCGTGAATGAGAACCGGAAAACGATACCATCCCTTTTGGGGAT
CTTCTTGGCGTGCGTCTGTAAACGCATGTGTCGCCAATGTACGTGTGTTT
GTGGGTCCTCTGTTCCCGTTCGTTGTCGCTTTTGGGAAACCAGAAAAAGC
AGCTTTTAAGGAATCACATCAGGACGAAGAAACGAACAAACAAGATAAAG
CGGGAGTTCTTGCCAAAGTTTTGTTTGCGTTTTTTTTGTGTTTCGGTATG
TTTTTAGCGGGTGAATTTCGAGACCAACATGTGAATGCCGGAGCGAGGAG
AGACCTGCCTTTCTTTGTTTGGTACGGAAGGCGATCGGCTGGGATAGGTC
GGTGCAGGCATTCGAAGGTACCGTGA
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