mRNA_P-fluviatile_contig1.513.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.513.1
Unique NamemRNA_P-fluviatile_contig1.513.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5647398..5647744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size208
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.6695986-CDS-P-fluviatile_contig1:5647397..56475131622815267.6695986-CDS-P-fluviatile_contig1:5647397..5647513Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5647398..5647513 +
1693561310.6398883-CDS-P-fluviatile_contig1:5647397..56475131693561310.6398883-CDS-P-fluviatile_contig1:5647397..5647513Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5647398..5647513 +
1622815267.682154-CDS-P-fluviatile_contig1:5647653..56477441622815267.682154-CDS-P-fluviatile_contig1:5647653..5647744Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5647654..5647744 +
1693561310.6539109-CDS-P-fluviatile_contig1:5647653..56477441693561310.6539109-CDS-P-fluviatile_contig1:5647653..5647744Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5647654..5647744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.513.1prot_P-fluviatile_contig1.513.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5647398..5647744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.513.1

>prot_P-fluviatile_contig1.513.1 ID=prot_P-fluviatile_contig1.513.1|Name=mRNA_P-fluviatile_contig1.513.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=69bp
QHFAYVYECLRFSCPFLFAHIDCIYFFFSELGCFVCPIGCPRHIGTIVPC
LRPETRPSPSRYHVCSCTV
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mRNA from alignment at P-fluviatile_contig1:5647398..5647744+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.513.1 ID=mRNA_P-fluviatile_contig1.513.1|Name=mRNA_P-fluviatile_contig1.513.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=347bp|location=Sequence derived from alignment at P-fluviatile_contig1:5647398..5647744+ (Porterinema fluviatile SAG_2381)
CAACACTTTGCATACGTGTATGAATGCCTACGCTTTTCCTGTCCATTTTT
ATTCGCTCATATAGACTGTATATATTTTTTCTTTTCTGAGCTTGGTTGCT
TTGTCTGTCCCATAGGGCACCGATTTGGATTCCTTGGCTTGCCTGTTTCC
ACCTGCCTCTGCGAGCATCCCGTATTGTTATATACGCAAGGCACTAGCAC
GGCCTACCAGATGGATGACGCGCCACCTGGTTGGTGGATGGGGGGTGGAA
GCGGAGATGTCCCCGCCACATAGGAACCATTGTCCCTTGTCTGCGACCAG
AGACTCGTCCGTCTCCGTCGCGCTACCATGTATGTAGTTGTACTGTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5647398..5647744+

>mRNA_P-fluviatile_contig1.513.1 ID=mRNA_P-fluviatile_contig1.513.1|Name=mRNA_P-fluviatile_contig1.513.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=414bp|location=Sequence derived from alignment at P-fluviatile_contig1:5647398..5647744+ (Porterinema fluviatile SAG_2381)
CAACACTTTGCATACGTGTATGAATGCCTACGCTTTTCCTGTCCATTTTT
ATTCGCTCATATAGACTGTATATATTTTTTCTTTTCTGAGCTTGGTTGCT
TTGTCTGTCCCATAGGCAACACTTTGCATACGTGTATGAATGCCTACGCT
TTTCCTGTCCATTTTTATTCGCTCATATAGACTGTATATATTTTTTCTTT
TCTGAGCTTGGTTGCTTTGTCTGTCCCATAGGATGTCCCCGCCACATAGG
AACCATTGTCCCTTGTCTGCGACCAGAGACTCGTCCGTCTCCGTCGCGCT
ACCATGTATGTAGTTGTACTGTCATGTCCCCGCCACATAGGAACCATTGT
CCCTTGTCTGCGACCAGAGACTCGTCCGTCTCCGTCGCGCTACCATGTAT
GTAGTTGTACTGTC
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