mRNA_P-fluviatile_contig1.486.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.486.1
Unique NamemRNA_P-fluviatile_contig1.486.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.486.1 vs. uniprot
Match: D8LNH6_ECTSI (RNA polymerase sigma factor SigD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNH6_ECTSI)

HSP 1 Score: 546 bits (1408), Expect = 1.660e-172
Identity = 293/427 (68.62%), Postives = 335/427 (78.45%), Query Frame = 1 
Query:  331 PETYSRNGRWTVYSSGGRNQPQNGRDPNRVLSKEAQAKREREYQLGTKIQRMVRLQKLKVDMMPPAXXXXXXXXXXXXXXXXXXXGVSNEAWAAAAGESVETLRLALEEGASAKQEMVVSNLSLVDIIVKNYVSTFSYGRFTEGDLKQDATVGLIRAVEKFDPERGFLFSTYGRWWVRKFLHEGVKNHDRLVRIPNSAAYRIAKVKRVRAELEAELGRAPTKPELALEAGLTVQQVEASLEQDSFYIERLDRLLGHGIGLADNIFASNYGESFLYGKDMLGPHPGESLQPTAEGSKVIQVSLRQDLSSAFVRLLDSTETECLVLRYGLHDGVTNSIEEVAEIMDFCDPDDVRIITTQAMAKLRNGCTPEEREKLMSYLSIYKPKSADYSKSMYNPVKSK--------SRRNASSGSGSSSSVGTFGD 1587
            P+ Y RNG+WTVYSS GR  P   RDPN+ LSK+AQA+R++EY+LGTKIQRM++L KLK D++ PA                    VS+E WA  A ESVE+LR AL+EG  AKQE+V+ NL+LVDIIVKNYV TF+YGRFTE DL QDATVGLIRAVEKFDPE+GF F+TYGRWWVRK+LHEGV+NH+R+VRIPNSAAYRIAKVKRVR ELE ELGRAPTKPE+ALE  LTVQQVEA LEQDSF IERLD  +GHG G+AD +FAS++GE FLYG DML  HPGE+  PT EG KVIQ SLR DLSSAFVRLLD+TE ECLVLRYGLHDGVTNSIE+ A IMDFCDPDDVRIITTQAMAKLR+GC PEER+KLMSYLS+Y+P +  YSK  Y+P KS+        SR + S    S S VG  GD
Sbjct:   14 PKNYRRNGKWTVYSSSGRGAPLQPRDPNQALSKKAQARRDKEYELGTKIQRMMKLLKLK-DVLQPAAGEDE---------------VSSEVWAEGAMESVESLRQALDEGEKAKQELVLDNLNLVDIIVKNYVGTFAYGRFTEKDLTQDATVGLIRAVEKFDPEKGFFFATYGRWWVRKYLHEGVQNHNRMVRIPNSAAYRIAKVKRVRDELEGELGRAPTKPEIALETDLTVQQVEACLEQDSFRIERLDGYMGHGFGMADTVFASHFGEGFLYGSDML-THPGETPAPTVEGEKVIQSSLRGDLSSAFVRLLDATERECLVLRYGLHDGVTNSIEQTAAIMDFCDPDDVRIITTQAMAKLRDGCLPEERKKLMSYLSVYEPSTPSYSKGKYDPSKSRRNKRLATDSRASTSGAISSGSRVGDGGD 423
[Close]
BLAST of mRNA_P-fluviatile_contig1.486.1 vs. uniprot
Match: A0A4P5VE37_9CYAN (RNA polymerase sigma factor n=1 Tax=Cyanobium sp. TaxID=2164130 RepID=A0A4P5VE37_9CYAN)

HSP 1 Score: 131 bits (329), Expect = 1.730e-29
Identity = 99/280 (35.36%), Postives = 145/280 (51.79%), Query Frame = 1 
Query:  637 LRLALEEGASAKQEMVVSNLSLVDIIVKNYVSTFSYGRFTEG-DLKQDATVGLIRAVEKFDPERGFLFSTYGRWWVRKFLHEGVKNHDRLVRIPNSAAYRIAKVKRVRAELEAELGRAPTKPELALEAGLTVQQVEASLEQDSFYIERLDRLLGHGIGLADNIFASNYGESFLYGKDMLGPHPGESLQPTAEGSKVIQVSLRQDLSSAFVRLLDSTETECLVLRYGLHDGVTNSIEEVAEIMDFCDPDDVRIITTQAMAKLRNGCTPEEREKLMSYLSIY 1473
            LRLAL +G  AK+ M+ +NL LV  + K Y       R  E  DL Q+ T+GL RAVE+FDP RGF FSTY  WW+R+ +   + +  R +R+P     ++ ++KR + EL   LGR+P+  ELALE G++   V   +++    I  LDR +G G             E+ L  +D+L  H      PT E   + +  LR DL  A +  L S E   + LR+GL D    ++ E+ E M     + VR I   A+ KLR    P+ R+++  YL  +
Sbjct:   73 LRLALHQGRRAKERMIQANLRLVVAVAKKYQQ-----RGLELLDLVQEGTLGLERAVERFDPTRGFRFSTYAYWWIRQGITRAIASQSRSIRLPVHITEKLNRLKRAQRELSLRLGRSPSLAELALELGVSEDTVRLIMQRQPQAIS-LDRPVGQGQ------------ETDL--RDLLEDH-----HPTPE-QVLTRAQLRADLM-ALLEELSSREASVIRLRFGLEDDTPRTLTEIGEQMGI-SRERVRQIEASALLKLRQ---PQRRKRMRDYLGSF 321
[Close]
BLAST of mRNA_P-fluviatile_contig1.486.1 vs. uniprot
Match: B8C5F0_THAPS (Sigma70_r2 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5F0_THAPS)

HSP 1 Score: 131 bits (329), Expect = 2.800e-29
Identity = 104/335 (31.04%), Postives = 160/335 (47.76%), Query Frame = 1 
Query:  454 EYQLGTKIQRMVRLQKLKVDMMPPAXXXXXXXXXXXXXXXXXXXGVSNEAWAAAAGE-SVETLRLALEEGASAKQEMVVSNLSLVDIIVKNYVSTFSYGRFTEGDLKQDATVGLIRAVEKFDPERGFLFSTYGRWWVRKFLHEGVKNHDRLVRIPNSAAYRIAKVKRVRAELEAELGRAPTKPELALEAGLTVQQVEA---SLEQDSFYIERLDRLLGHGIGLADNIFASNYGESFLYGKDMLGPHPGESLQPTAEGSKVIQVSLRQDLSSAFVRLLDSTETECLVLRYGLHD------GVTN--SIEEVAEIMDFCDPDDVRIITTQAMAKLRN 1422
            E +LG K Q  +RLQK+  D+                         +++ W AAAG+ ++E L   LEEG  AK ++V SNL +V  +V  Y+       +  GDL QD T+ LIRA EK++PERGF FSTY  +W+R  +        R+V +P        +V +  A L  ELGR PTK EL+    +TV Q++    +++Q +F ++              N +  N   S    KD +       +  T E  K  ++ +++ L S   R L   E + L+LRYGL D      G++   +I EV++++    PD VR I   +  +LR+
Sbjct:   30 EKELGAKTQEAMRLQKMYEDLQSKHGREP-----------------TDDEWCAAAGKINMEALEQVLEEGIEAKNQLVASNLRMVQRVVNLYIRNGLGSEYNAGDLMQDGTMALIRAAEKYEPERGFRFSTYAMYWIRSAVKRSQTMQSRIVNVPQRIHETYKRVTKTEARLRKELGRDPTKVELSAACDITVVQLDRCRRAMQQAAFSLD----------AEVQNTYKPNNSNSR---KDTMYDLVASKVDET-EYEKTQRLLMKEHLISTLRRYLSPHEVDLLLLRYGLMDERALPKGMSGPLTIAEVSKLVGL-KPDKVRRIIINSQKQLRH 332
[Close]
BLAST of mRNA_P-fluviatile_contig1.486.1 vs. uniprot
Match: UPI0019F950EB (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Oscillatoriales cyanobacterium LEGE 11467 TaxID=1828826 RepID=UPI0019F950EB)

HSP 1 Score: 129 bits (324), Expect = 7.060e-29
Identity = 104/327 (31.80%), Postives = 158/327 (48.32%), Query Frame = 1 
Query:  448 EREYQLGTKIQRMVRLQKLKVDMMPPAXXXXXXXXXXXXXXXXXXXGVSNEAWAAAAGESVETLRLALEEGASAKQEMVVSNLSLVDIIVKNYVSTFSYGRFTEGDLKQDATVGLIRAVEKFDPERGFLFSTYGRWWVRKFLHEGVKNHDRLVRIPNSAAYRIAKVKRVRAELEAELGRAPTKPELALEAGLTVQQVEASLEQDSFYIERLDRLLGHGIGLADNIFASNYGESFLYGKDML---GPHPGESLQPTAEGSKVIQVSLRQDLSSAFVRLLDSTETECLVLRYGLHDGVTNSIEEVAEIMDFCDPDDVRIITTQAMAKLR 1419
            E E   G ++QR+  L  LK ++M  +                         WA AA  S E L LA+ +G  AK++MV +NL LV  + K Y+           DL Q+ T+G+ R VEKFDP +G+ FSTY  WW+R+ +   +    R +R+P     ++ K+K+V+ +L  ELGRA T  ELA E  LT +Q+         Y+ER  + L   + + DN       ++ L   D+L   GP P +           +Q SLR DL      L  S + E L LR+GL DG + ++ ++ +++     + VR I  +A+ KLR
Sbjct:   27 EEEILFGKQVQRLASLNALKEELMEASDREPTPIE-----------------WADAANISEEELELAIAKGDLAKRKMVEANLRLVVSVAKKYLKR----NVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKVQRQLTQELGRAATVAELASEMDLTTKQIRE-------YLERARQPLSLDLRVGDNQ------DTEL--ADLLEDEGPSPEDF---------AVQSSLRNDLEMLMADLT-SQQREVLALRFGLKDGQSMTLAKIGDLLQI-SRERVRQIEREALTKLR 306
[Close]
BLAST of mRNA_P-fluviatile_contig1.486.1 vs. uniprot
Match: A0A2W4WBA3_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbya foveolarum TaxID=47253 RepID=A0A2W4WBA3_9CYAN)

HSP 1 Score: 130 bits (327), Expect = 2.240e-28
Identity = 92/280 (32.86%), Postives = 145/280 (51.79%), Query Frame = 1 
Query:  625 SVETLRLALEEGASAKQEMVVSNLSLVDIIVKNYVSTFSYGRFTEGDLKQDATVGLIRAVEKFDPERGFLFSTYGRWWVRKFLHEGVKNHDRLVRIPNSAAYRIAKVKRVRAELEAELGRAPTKPELALEAGLTVQQVEASLEQDSFYIERLDRLLGHGIGLADNIFASNYGESFLYGKDMLGPHPGESLQPTAEGSKVIQVSLRQDLSSAFVRLLDSTETECLVLRYGLHDGVTNSIEEVAEIMDFCDPDDVRIITTQAMAKLRNGCTPEEREKLMSYL 1464
            S + L+L L +  +AK+ M+ SNL LV  I K Y++          DL Q+  +GL RA EKFDP++G+ FSTY  WW+R+ +   + N  R +R+P     ++ K+K+   EL  +L R+PT+ E+A    +T +Q+ A L+Q    ++R    L H +G                G+D       E    ++  SK+ +  +RQ++S     +L   E E + LRYGL  G T+++EEV  I      + VR I T+AM KLR    P+   +L ++L
Sbjct:  170 SEQQLKLRLRKARAAKRRMIRSNLRLVVSIAKRYLNR----GVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQGITRTIANDARTIRLPIHVVEKLNKLKKASRELRKDLQRSPTENEIAAALDITPEQLRA-LQQ----VQRKSLSLNHRVGK---------------GEDTELMELLEDNNASSPESKISESMMRQEISDVLTEVLSEREKEIIALRYGLTTGETHTLEEVGRIFQL-SRERVRQIQTKAMRKLRR---PQVASRLKNWL 421
[Close]
BLAST of mRNA_P-fluviatile_contig1.486.1 vs. uniprot
Match: A0A1Z5JGJ7_FISSO (RNA_pol_sigma70 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGJ7_FISSO)

HSP 1 Score: 130 bits (327), Expect = 3.860e-28
Identity = 91/299 (30.43%), Postives = 147/299 (49.16%), Query Frame = 1 
Query:  604 WAAAAGESVETLRLALEEGASAKQEMVVSNLSLVDIIVKNYVSTFSYGRFTEG---------DLKQDATVGLIRAVEKFDPERGFLFSTYGRWWVRKFLHEGVKNHDRLVRIPNSAAYRIAKVKRVRAELEAELGRAPTKPELALEAGLTVQQVEASLEQDSFYIERLDRLLGHGIGLADNIFASNYGESFLYGKDML--GPHPGESLQPTAEGSKVIQVSLRQDLSSAFVRLLDSTETECLVLRYGLHDGVTNSIEEVAEIMDFCDPDDVRIITTQAMAKLRNGCTPEEREKLMSYLS 1467
            WA A G SVE LR  LEEG SA++ +V +N+ LV  I K + +         G         D+ Q+ T+GL+ AVE++ PE+GF FSTY  WWV++ +   + +  R +R+P      + K+++ + E + + GR PT PELA         ++  L++   Y E    +L     L    F     +S   G  +   GP P E ++            LR+D+ +     L ++E E ++ RYGL DG   ++ E A+ +     D VR++  +A+ KLR+   P+   KL  Y++
Sbjct:  151 WAEACGVSVENLRKLLEEGQSAREAVVAANIGLVTSIAKRHYAALKSSTAESGGVGTILTIQDMVQEGTLGLMEAVERYKPEKGFRFSTYATWWVKQRILRSILDSSRTIRLPAHVHAMLQKMRKAKMEFKEQTGREPTTPELA-------HHLDVPLKKIQLYAESSRNVLSLEKPLKTTSFKE---DSRTLGDTLASEGPTPEEDVEADY---------LRRDIRAVMETSLAASEREVIINRYGLDDGNPRTVAETADSLGLT-VDRVRLVEARALNKLRH---PQRSYKLKEYIN 426
[Close]
BLAST of mRNA_P-fluviatile_contig1.486.1 vs. uniprot
Match: UPI0019E11358 (RpoD/SigA family RNA polymerase sigma factor n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019E11358)

HSP 1 Score: 129 bits (323), Expect = 4.270e-28
Identity = 96/286 (33.57%), Postives = 145/286 (50.70%), Query Frame = 1 
Query:  607 AAAAGESVETLRLALEEGASAKQEMVVSNLSLVDIIVKNYVSTFSYGRFTEGDLKQDATVGLIRAVEKFDPERGFLFSTYGRWWVRKFLHEGVKNHDRLVRIPNSAAYRIAKVKRVRAELEAELGRAPTKPELALEAGLTVQQVEASLEQDSFYIERLDRLLGHGIGLADNIFASNYGESFLYGKDMLGPHPGESLQPTAEGSKVIQVSLRQDLSSAFVRLLDSTETECLVLRYGLHDGVTNSIEEVAEIMDFCDPDDVRIITTQAMAKLRNGCTPEEREKLMSYL 1464
            AA  G S   LR  L +G +AK+ M+ SNL LV  I K Y++          DL Q+  +GL RA EKFDP++G+ FSTY  WW+R+ +   + N  R +R+P     ++ K+K+   EL  EL R PT+ ELA    +T  Q+  SL+Q    + R    L H +G  ++       E             G +  P    SK+ +  +RQ+++S    +L   E + + LRYGL  G T+++EEV  + +    + VR I T+AM KLR    P+   +L  +L
Sbjct:  133 AAELGLSDAQLRQKLHQGRAAKRRMIRSNLRLVVSIAKRYLNR----GVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQGITRTIANDARTIRLPIHIVEKLNKLKKAHRELRRELQRNPTEAELAESLDMTADQLR-SLQQ----VRRRSLSLNHRVGKGEDTELMELLED------------GNTQSPE---SKISESMMRQEITSVLAEVLTEREKDIITLRYGLATGETHTLEEVGGMFNL-SRERVRQIQTKAMRKLRR---PQVAARLRGWL 390
[Close]
BLAST of mRNA_P-fluviatile_contig1.486.1 vs. uniprot
Match: A0A1Z3HU38_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Halomicronema hongdechloris C2206 TaxID=1641165 RepID=A0A1Z3HU38_9CYAN)

HSP 1 Score: 128 bits (322), Expect = 5.760e-28
Identity = 94/282 (33.33%), Postives = 145/282 (51.42%), Query Frame = 1 
Query:  619 GESVETLRLALEEGASAKQEMVVSNLSLVDIIVKNYVSTFSYGRFTEGDLKQDATVGLIRAVEKFDPERGFLFSTYGRWWVRKFLHEGVKNHDRLVRIPNSAAYRIAKVKRVRAELEAELGRAPTKPELALEAGLTVQQVEASLEQDSFYIERLDRLLGHGIGLADNIFASNYGESFLYGKDMLGPHPGESLQPTAEGSKVIQVSLRQDLSSAFVRLLDSTETECLVLRYGLHDGVTNSIEEVAEIMDFCDPDDVRIITTQAMAKLRNGCTPEEREKLMSYL 1464
            G S   L+  L +G +AK+ M+ SNL LV  I K Y++          DL Q+  +GL RA EKFDP++G+ FSTY  WW+R+ +   + N  R +R+P     ++ K+K+   +L  +L R PT+ ELA    +TV+Q+  SL+Q    + R    L H +G  ++       E             G +  P    SK+ +  +RQ++SS    +L   E + + LRYGL  G T+++EEV  I +    + VR I T+AM KLR    P+   +L  +L
Sbjct:  137 GLSPAQLKQKLHQGRAAKRRMIRSNLRLVVSIAKRYLNR----GVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQGITRTIANDARTIRLPIHIVEKLNKLKKAHRDLRRDLQRNPTEAELAEVLDMTVEQLR-SLQQ----VRRRSLSLNHRVGKGEDTELLELLED------------GNTQSPE---SKISESMMRQEISSVLAEVLTEREKDIITLRYGLTTGETHTLEEVGGIFNL-SRERVRQIQTKAMRKLRR---PQVAARLRGWL 390
[Close]
BLAST of mRNA_P-fluviatile_contig1.486.1 vs. uniprot
Match: UPI001F559531 (RpoD/SigA family RNA polymerase sigma factor n=2 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI001F559531)

HSP 1 Score: 128 bits (321), Expect = 7.770e-28
Identity = 92/272 (33.82%), Postives = 139/272 (51.10%), Query Frame = 1 
Query:  649 LEEGASAKQEMVVSNLSLVDIIVKNYVSTFSYGRFTEGDLKQDATVGLIRAVEKFDPERGFLFSTYGRWWVRKFLHEGVKNHDRLVRIPNSAAYRIAKVKRVRAELEAELGRAPTKPELALEAGLTVQQVEASLEQDSFYIERLDRLLGHGIGLADNIFASNYGESFLYGKDMLGPHPGESLQPTAEGSKVIQVSLRQDLSSAFVRLLDSTETECLVLRYGLHDGVTNSIEEVAEIMDFCDPDDVRIITTQAMAKLRNGCTPEEREKLMSYL 1464
            L +G SAK+ M+ SNL LV  I K Y++          DL Q+  +GL RA EKFDP++G+ FSTY  WW+R+ +   + N  R +R+P     ++ K+K+   +L  EL R PT+ ELA    +TV Q+  SL+Q    + R    L H +G                G+D       E     +  SK+ +  +RQ++SS    +L   E + + LRYGL  G T+++EEV  + +    + VR I T+AM KLR    P+   +L  +L
Sbjct:  147 LHQGRSAKRRMIRSNLRLVVSIAKRYLNR----GVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQGITRTIANDARTIRLPIHIVEKLNKLKKAHRDLRRELHRNPTEHELAAALDVTVDQLR-SLQQ----VRRRSLSLNHRVGK---------------GEDTELMELLEDSNTQSPESKISETMMRQEISSVLAEVLTEREKDIITLRYGLATGETHTLEEVGGMFNL-SRERVRQIQTKAMRKLRR---PQVAARLKGWL 390
[Close]
BLAST of mRNA_P-fluviatile_contig1.486.1 vs. uniprot
Match: UPI001FE9AA9B (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptothoe spongobia TaxID=2651728 RepID=UPI001FE9AA9B)

HSP 1 Score: 125 bits (315), Expect = 7.920e-28
Identity = 91/272 (33.46%), Postives = 142/272 (52.21%), Query Frame = 1 
Query:  649 LEEGASAKQEMVVSNLSLVDIIVKNYVSTFSYGRFTEGDLKQDATVGLIRAVEKFDPERGFLFSTYGRWWVRKFLHEGVKNHDRLVRIPNSAAYRIAKVKRVRAELEAELGRAPTKPELALEAGLTVQQVEASLEQDSFYIERLDRLLGHGIGLADNIFASNYGESFLYGKDMLGPHPGESLQPTAEGSKVIQVSLRQDLSSAFVRLLDSTETECLVLRYGLHDGVTNSIEEVAEIMDFCDPDDVRIITTQAMAKLRNGCTPEEREKLMSYL 1464
            L+   SAK++M+ SNL LV  I K Y++          DL Q+  +GL RA EKFDP++G+ FSTY  WW+R+ +   + N  R +R+P     ++ K+K+ + EL  +L R PT+ ELA E  LT +Q+  SL+Q    + R    L H +G  ++       E             G +L P    S++ +  +RQ++S     +L   E + + LRYGL  G  +++EEV  I +    + VR I T+AM KLR    P+   +L ++L
Sbjct:   60 LKYARSAKRKMIRSNLRLVVSIAKRYLNR----GVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQGITRTIANDARTIRLPIHIVEKLNKLKKTQRELRKQLNRNPTEAELAAELDLTPEQLR-SLQQ----VRRKSLSLNHRVGKGEDTELMELLED------------GSTLSPE---SRMNESMMRQEISDVLTEVLTEREKDIISLRYGLTTGEPHTLEEVGGIFNL-SRERVRQIQTKAMRKLRR---PQVASRLKNWL 303
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNH6_ECTSI1.660e-17268.62RNA polymerase sigma factor SigD n=2 Tax=Ectocarpu... [more]
A0A4P5VE37_9CYAN1.730e-2935.36RNA polymerase sigma factor n=1 Tax=Cyanobium sp. ... [more]
B8C5F0_THAPS2.800e-2931.04Sigma70_r2 domain-containing protein n=1 Tax=Thala... [more]
UPI0019F950EB7.060e-2931.80RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A2W4WBA3_9CYAN2.240e-2832.86RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A1Z5JGJ7_FISSO3.860e-2830.43RNA_pol_sigma70 domain-containing protein n=2 Tax=... [more]
UPI0019E113584.270e-2833.57RpoD/SigA family RNA polymerase sigma factor n=1 T... [more]
A0A1Z3HU38_9CYAN5.760e-2833.33RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
UPI001F5595317.770e-2833.82RpoD/SigA family RNA polymerase sigma factor n=2 T... [more]
UPI001FE9AA9B7.920e-2833.46RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5384178..5393697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score550.4
Seed ortholog evalue9.9e-154
Seed eggNOG ortholog2880.D8LNH6
EggNOG free text desc.Sigma-70 region 2
EggNOG OGs2SJXU@2759,COG0568@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRNA polymerase sigma-70 like domain
Ec32 orthologEc-04_003820.1
Exons8
Model size4411
Cds size1767
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.486.1prot_P-fluviatile_contig1.486.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5386777..5393652 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.7957888-UTR-P-fluviatile_contig1:5384177..53867761622815342.7957888-UTR-P-fluviatile_contig1:5384177..5386776Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5384178..5386776 -
1693561555.7327907-UTR-P-fluviatile_contig1:5384177..53867761693561555.7327907-UTR-P-fluviatile_contig1:5384177..5386776Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5384178..5386776 -
1622815342.9139104-UTR-P-fluviatile_contig1:5393652..53936971622815342.9139104-UTR-P-fluviatile_contig1:5393652..5393697Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5393653..5393697 -
1693561555.8227186-UTR-P-fluviatile_contig1:5393652..53936971693561555.8227186-UTR-P-fluviatile_contig1:5393652..5393697Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5393653..5393697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815342.8134224-CDS-P-fluviatile_contig1:5386776..53872081622815342.8134224-CDS-P-fluviatile_contig1:5386776..5387208Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5386777..5387208 -
1693561555.7437875-CDS-P-fluviatile_contig1:5386776..53872081693561555.7437875-CDS-P-fluviatile_contig1:5386776..5387208Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5386777..5387208 -
1622815342.8252492-CDS-P-fluviatile_contig1:5387412..53875651622815342.8252492-CDS-P-fluviatile_contig1:5387412..5387565Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5387413..5387565 -
1693561555.7530038-CDS-P-fluviatile_contig1:5387412..53875651693561555.7530038-CDS-P-fluviatile_contig1:5387412..5387565Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5387413..5387565 -
1622815342.839425-CDS-P-fluviatile_contig1:5388174..53883451622815342.839425-CDS-P-fluviatile_contig1:5388174..5388345Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5388175..5388345 -
1693561555.7606108-CDS-P-fluviatile_contig1:5388174..53883451693561555.7606108-CDS-P-fluviatile_contig1:5388174..5388345Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5388175..5388345 -
1622815342.853878-CDS-P-fluviatile_contig1:5388996..53891101622815342.853878-CDS-P-fluviatile_contig1:5388996..5389110Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5388997..5389110 -
1693561555.7679894-CDS-P-fluviatile_contig1:5388996..53891101693561555.7679894-CDS-P-fluviatile_contig1:5388996..5389110Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5388997..5389110 -
1622815342.8638237-CDS-P-fluviatile_contig1:5389827..53900871622815342.8638237-CDS-P-fluviatile_contig1:5389827..5390087Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5389828..5390087 -
1693561555.7825804-CDS-P-fluviatile_contig1:5389827..53900871693561555.7825804-CDS-P-fluviatile_contig1:5389827..5390087Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5389828..5390087 -
1622815342.8768578-CDS-P-fluviatile_contig1:5391027..53912351622815342.8768578-CDS-P-fluviatile_contig1:5391027..5391235Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5391028..5391235 -
1693561555.7965925-CDS-P-fluviatile_contig1:5391027..53912351693561555.7965925-CDS-P-fluviatile_contig1:5391027..5391235Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5391028..5391235 -
1622815342.8886065-CDS-P-fluviatile_contig1:5391678..53918921622815342.8886065-CDS-P-fluviatile_contig1:5391678..5391892Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5391679..5391892 -
1693561555.8057816-CDS-P-fluviatile_contig1:5391678..53918921693561555.8057816-CDS-P-fluviatile_contig1:5391678..5391892Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5391679..5391892 -
1622815342.9006777-CDS-P-fluviatile_contig1:5393437..53936521622815342.9006777-CDS-P-fluviatile_contig1:5393437..5393652Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5393438..5393652 -
1693561555.8132415-CDS-P-fluviatile_contig1:5393437..53936521693561555.8132415-CDS-P-fluviatile_contig1:5393437..5393652Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5393438..5393652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.486.1

>prot_P-fluviatile_contig1.486.1 ID=prot_P-fluviatile_contig1.486.1|Name=mRNA_P-fluviatile_contig1.486.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=589bp
MGRRPTTTLVQQRQMLRAWLILSIPAMRCAYLGGCRGVDSFAVPGRLRQQ
QGLLDSRRACSRGGIQRVKRRRARCLAMDAEGGAGGGTAEVTVPLPETYS
RNGRWTVYSSGGRNQPQNGRDPNRVLSKEAQAKREREYQLGTKIQRMVRL
QKLKVDMMPPAAAGRPAGATTTGGGGGGSSGVSNEAWAAAAGESVETLRL
ALEEGASAKQEMVVSNLSLVDIIVKNYVSTFSYGRFTEGDLKQDATVGLI
RAVEKFDPERGFLFSTYGRWWVRKFLHEGVKNHDRLVRIPNSAAYRIAKV
KRVRAELEAELGRAPTKPELALEAGLTVQQVEASLEQDSFYIERLDRLLG
HGIGLADNIFASNYGESFLYGKDMLGPHPGESLQPTAEGSKVIQVSLRQD
LSSAFVRLLDSTETECLVLRYGLHDGVTNSIEEVAEIMDFCDPDDVRIIT
TQAMAKLRNGCTPEEREKLMSYLSIYKPKSADYSKSMYNPVKSKSRRNAS
SGSGSSSSVGTFGDVTHDMGGGARETTSANAAAAAAAAGRDSRGQERRGV
WEATTEAQVAGGRRPYNGFESRSATAAEVEGRRQRRRG*
back to top

mRNA from alignment at P-fluviatile_contig1:5384178..5393697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.486.1 ID=mRNA_P-fluviatile_contig1.486.1|Name=mRNA_P-fluviatile_contig1.486.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=9520bp|location=Sequence derived from alignment at P-fluviatile_contig1:5384178..5393697- (Porterinema fluviatile SAG_2381)
AGGAAGCACATTAGGAACTCGCTACCCTCACGTCAAGTGAGAAATATGGG
ACGGCGGCCAACCACTACGTTGGTACAACAACGGCAGATGCTTCGCGCCT
GGCTGATCCTGAGCATTCCAGCCATGCGTTGCGCCTACCTGGGCGGTTGC
AGAGGAGTGGATTCGTTCGCGGTGCCGGGACGGTTGCGGCAGCAGCAGGG
GCTGCTTGATAGCAGACGCGCATGTTCGAGGGGTGGCATCCAGCGCGTGA
AAAGGAGGAGGTGCGTGTGTTGATGAAGTTGTAACGTCACCGCCTCGATC
GATAGAGATAGAGAGCGAGGGAGAGAGAGAAGGACAGCACAGCCAGCTCT
GCACGCTGTGACAGCCTTGAGTGGATGATGCTCTCAATCCATGGGCTGTG
TAGAGATAGAGGCGTGAAACGTGGGAAATGATGTGCCACGCCCGCGACGA
GAAGAAAGAGGGCAGAGAGGGGATGGATGTGCATGCGTGTGTAGCTCGCG
TCATGCGTGAGGGGGTGGCGACCGTGCTCTCCGTTTGCTGTTATGGTGAC
AACAAATATGGTGTCTTAACGTATCTCTACCTGCTGTGGACTTTTCTTGA
GGCGTGCCTGATTAGGAGATGCGATGGCTGTGCTGTCTGGCCGATTGTTT
GTCTTCCGCGTACGCTAACGGCATGAACACGAAACGAAGTGAGAAAATGC
GCGCGCGGGGGTAGACAGCGAGCGAGACCTCAGAATAACCGGCTCGGTGT
GGGCGCGCCACACACGTTTTACCGTACATCCCCTGAGAATCACGCGCTCT
GCTTTCCATCCGCGACCATGGCTTCTCAATCAACAATGAAAAGGATGAGC
TCATCGCGGTCTTCAGCCGAGCGGTCATGGACGAATGTGTGGTATACGTC
TGAATTGTTGTCGTCCACACAGGAAAAAACATGCAACGCCGCCCGTGTGT
GTGTATCGATGTGAGTTCGGATCTGAAAGAGGTGTTGCGTCGTGTACGAA
CGCCCGCTCTCTCTTCTCTCTCCCTTGCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTATCT
TGATCGCGGGTTCTCAAAACAAACGTGGAGTCATCGTCCTGCCATCGAAG
GACGAAACAATTCCCTGGATCATCGAAATCGTATACTCCTACATAAGAAT
ATAAGAGTAAGAGTGTGGCTCGACCACACAAGTGCAAGGTCACGGACTAG
GTTGCTAGTTTGTTCCCCCGCCTTCAAATCAACTCTCCCTCGTATGCATA
CGTACGCTGCAGCGGCAGCAACCATGTTTGAAAGCGGGTGTTGCGTAGTT
AAACACCCGTTCTTGGGTGATACTTCAGTAAGAAACAAAGCTTTGGAGTA
ACCGCGCTCGCTCTCTGCTGGCTGCCCACTTGAAATCCGAGGTTTGCTTG
AGTGCGAACGTGGCCGTTGTATGTGTGCACGCCACTTGTAAAACCAAGTT
TTGTCGACAACGAACCCGCCAATGTCACGAAAGGGTCGAAAATCTGCTGC
GCCAAGTCCTGGACCGCTAGTCGATCGAATTGACCATTATGTTTGTCGTC
GGCACACCATGAGGTCACCGCCGTCCATCATGTGTCTTCGGCTCCCCGAT
TGTCTACTTCCTTGTGTTGACCTGCCGTCTGTTTCCCCATCGCTGCCGCT
CCCGCGATACCGTTCAACGTTTTTTGTTGGTGCACGACACCGTTGATTGA
TTCCACGGCTGCCCGGAACGGCATTATAAACCAATATCACACCTGCTGTA
CACAGGGCACGCTGCTTGGCGATGGACGCGGAGGGGGGGGCCGGGGGCGG
AACAGCGGAAGTTACGGTGCCGCTGCCGGAGACATACAGCCGGAACGGGC
GGTGGACGGTCTACAGCAGCGGCGGGCGCAACCAACCCCAAAACGGTCGA
GATCCGAATCGGGTCCTATCGAAGGAGGCCCAGGCCAAGAGAGAAAGGGA
GTACCAGCTCGGCACCAAGGTGAGTGTGTCACCGGGTGGGCATGACCCCG
TGGGTCTTCGATCAGATTTGGGCGGGCACGTGGTAGCAGAGGCCACGCTC
TGCTTTTTCAAATTGTTGGACTTCGTTCGTGGCGTCTACCGGGAGTATAT
GTAGACGAACCACCTACACGTGTTCAGGATTTTGGGACACATGTGTTTGA
GGGCGTTCGATGGTGTCAGGTTCGCATCTCTGTTTTGACACACAACAGTG
ATGGAGTTGTATTTGTTTCGGGGAGGTTGTTGCCCTCCCCCCCCTCGCCC
CCTCCCCACCCCTTGTTTTGTCAACGAGGCGCGCCCGATAGTCTCAGTCG
CATCCTCTCCACAGCCACGCGGCCGCGCTGTGGTCTGGGTTTCTGATTAC
CTCCCCGTATTCCCTTTCCGCGACTTGACACGCCATCACTCTCTCTCTCT
CTCGGTCGCCAGATCCAGAGGATGGTGCGGCTGCAGAAGCTGAAGGTCGA
CATGATGCCGCCGGCGGCAGCAGGCCGGCCAGCAGGGGCAACGACGACGG
GGGGGGGCGGGGGCGGCAGTAGTGGAGTTAGCAATGAGGCGTGGGCGGCG
GCGGCCGGGGAGTCGGTCGAGACGCTCCGGCTTGCTCTGGAGGAGGGCGC
AAGCGCCAAACAGGAAATGGGTGAGACTGAAAGAGATGTGTGAACGATCG
ATGGCTGAATAGGAGAAGGTCTGGAAGGGTGGCGGAGAAGCCAATAGGGG
TCGCACTGGACGAGGGAATTTTTTTTTTGGGATAGCTTGGGTATCGCTGG
TTTTTTGAAAACGTGCGGTGAATGTTTGCGGTGTTGCGAAGGCGGAAGGA
AAGGATGGCCGACAGCACCGGTAGCGAGTTGTTCGCAAAAGTGGAAACTG
AAGGCGCGGGTGAGAGAAACAAAGTAAACATAAGAAACGGAATAAGAGAG
TAGAGGGAAGCAGCAGACAACGATGACGGGTGCATGGTTGCTCACCACTC
GTATCTGCCATCAAACCATTCCAACACCCTGACCGCACACAAGTGTTGTG
TTGGACAGAACAGCGGTGAGTGACGCGGCTGGCGTCCTTCGTCGGCCCTC
TCTCCGCGAGCTCACGTACCTCACGCCAACTTTCTCATGAGCAACTCGCT
CCCAACCCTTCGCCACCCCGAAATCCCCAGACTGAGTGATCGTCGTGCAA
GCACCGCTGAAAAAGCAACCCCATCCTTTCGCCGAACGGTTTTTGTCTCA
CCCTGAGCCCGGTCGGGCCGTACACGAAAGAGTAGGAGGAGACCGGCGCT
ATGCTTTCAATCGCTTCCCGCCCCTGCTTCTATTCGCGACCCAAACCGAG
GCTGACCAAAGTTGATAAGGGGCGTTTGCGTACAGCCTGTGATGTTTGCC
GTCAATATGAACGTTTCTTGAACAGCCCCTCACCACGCGCACCCGCTCAC
CCCCCTCTCGCCCTGTTGGACGTGACTCCTGCCGTCGGACGCCGTTTTGA
CGGTATGGTCGCAAACCTCAAACCTACCGCGCGGGGCTGTCGCTGTTGCC
GCCGCCCGCCATCTTGGTCGCGGTCGATCGATCAATCGTGACGATCGCTG
GCTTGCGCAGTTGTGAGCAACCTCAGCCTGGTGGACATCATCGTCAAGAA
CTACGTGAGCACGTTCTCATACGGGAGGTTCACCGAGGGGGACCTCAAGC
AGGACGCGACGGTCGGGCTCATCCGAGCCGTGGAGAAGTTCGACCCGGAG
AGGGGTTTCCTGTTCTCCACCTACGGCCGCTGGTGGGTAAGGAAATTCCT
CCACGAGGGGGTCAAGAACCACGACCGGCTGGTGCGGATACCCAACAGCG
CGGCCTACCGGATCGCCAAGGTGAGCAAGAAAGACGGGAGAAGAATGGAA
GAAGGCGCAGGGTAGAAACAGAAAAACAACCAAAAAAACAACCGCCAAGT
TGATTGGAATGTCGGAGCGCGTCCTGTGTGTTCGGTTGGTTCGCGCGAAG
GGCTGGTGTTTGCGTGCTTTCACAGCAGTTTTATTCGCCATTGCTGCCTG
CACAGGCGCGTGTGTATGTGCCTTCTTGGATGTTTTCATTTCCAAGTGGA
CGTGCCTGCTTGGATGAACATGAACTGGATTGAACATTCTCTTGTGCGCT
TGTGGTCTGAACAGGGGAAGGGGGGGCGTACTCATGTTTTGCATGCCTTA
GTTGTTAGACCATTGACCACGCGTCCTCGAGAGGACGGAGCATTGTTCCC
GCTGGGGAAGGGGGGGAGGTTCGTTTTCGCTTTGTGTTGGAAGCATTTGT
TCTTTTCAATCGGGTTCATGGTTTCCCATTTTCCATCACATCGACCCGCG
CGAGCACACTCAGTATGATCCAATCGCCTAGGTCGCAGCAATCAATGATC
AGCTGCGTTAACGCAATCGTTTTTTCACGCGTGGAGTTGATTGAAGCAGT
ACCAACAGCCCAACCTCCCGCACCGCAATCATATTGACATGTAGTCGTCG
GGACAGGTGGAACGTGTCCGACGCAGCACCAACAACTTAACCTTCGCACG
TCGCAATCAAATATCAAATTTCATACCGGCGGAACAGGTGAAACGCGTCC
GAGCGGAGCTCGAAGCCGAGCTCGGCCGGGCCCCCACTAAACCGGAGCTG
GCCTTGGAGGCGGGCTTGACGGTGCAGCAGGTCGAGGCTTCTCTGGAGCA
GGTACGTGTGCGTGTTGGTGTTGCTGTTGTGGTTGTTTTGGTTGATGGTG
TGGGCTTGTTATTGTGGCGGCGTTTTGCATTCTGTGGCCGTATGCGATGC
TGTCTGCCTAGGGTTGTAGTGCTCGTGTCGTGCCCATTTGTGTATTGTTC
AGCACATTGTTTGGCGTTTTGCGGCTTGACTTCGAAGGATGACCCTCGGT
ACTCTCTGAGGCTAGCTCTGGGTGCACCAGAACATGCACGTCTGACGGTC
GAATCACGTGTTGCAGGGCCGGATTTTTTCATCCAAGACATACTTCGGCC
TGCCCTCCTCGATGAGGTCGTTTGAGGCTCTTAATGGCGCGAGAGGCAGG
CGGCGCGGTTCGGAATGGGTTTTGCTTGCGATTTTCTTTTTCTTTTTCGT
GTTTGAAAAAGCGAGATATCCGGAGCAGTGTGGTAATCCAGTCGTACGTC
AACTGTGTACGAGAGGCGCACAACCATGTGATTCGTTGTTGTTTCGAGCC
CCCCGAGGGTTGGGACACAACAGGAGTAATCTTCGTCTTCGATGAATATC
CGTCCAGGGCGAAAACGGGGGCAAATTACCCGGAACCAAGCTAAACATGG
TGGTCGATCGTCGTTGCTTTTGTACCGGCGTCGTTTCTGTTTCTTCGAGC
AGGATTCGTTCTACATCGAGCGCCTCGACCGGCTCCTGGGCCATGGAATC
GGGCTGGCGGACAACATTTTCGCCTCGAACTACGGGGAGTCGTTCCTGTA
CGGGAAGGACATGCTGGGGCCGCATCCGGGGGAGTCCCTCCAGCCGACCG
CGGAGGGGTCTAAGGTCATCCAGGTGAGGCAAAAGTCGATCAGAAAGTCA
GTTAAGCGGAAACAGACGTTTTGATCGAGGGAAGAGAGCCAGTCAGCCGG
TCGGTCAAAGCCCGTCGGTTAGCGGCGTGGGGACAGCAGTCAACTTTCAG
CTAGCGAGCCAGTCAAACAGTCAGTCACTCGTGCTGAGGTTGTTGCGAGC
GTGTTGGCGCAGAAATTTAGATACGGGAAACGCATGGCGAGTAAGGAAGA
CGACTGCAATCCTCGACCATGAGCACGAGAGAGTGAGGTGGATGGATGGA
TGGATGAATGGACGGGAGTATCAAACGTGTCTGAACACACGGCAGCATTG
CGTCGGCTGTGGAGTACAGCGTCTTGTTTCCAGCACGAACCATCCGTCGG
AACTCGAGGCCTTCCTTTCGAACTTGTCGAGCACGAAATACAGTCATCTT
CGTTAGATTCCTCCCGCCCCCCCTCTAACAACTACGGCATGTAAAACATG
AGTACGCCCCCCTCGCTCTCTCGCGCGCGCCTGCCCCGCTCAAGAGACCG
TGCTCCGTATTTGACACCGCAACCCTCCACTGCCCCCGCCGTCGCCACCG
CCTCTGTTTCAACGATCAACGAATTTGGCCAGGTCTCGCTCAGGCAGGAC
CTTTCCAGCGCGTTCGTGCGGCTGCTAGACTCCACGGAGACGGAGTGCCT
GGTGCTGCGGTACGGGCTGCACGACGGTGTGACCAACTCCATCGAAGAAG
TGGCCGAAATCATGGACTTCTGTGACCCCGACGACGTGAGAGCCCTTACT
GTTTTTATCCCCCCGCCTTCATCGCCTTCGTTGCCTTCAATATTTTTGTC
GAAAGCTTGTTTTTTTTTTTCATGTTTTGGGGACGTCGACGATGATTTTG
GCGTGGTGCTCTTGACGCCGAAAAAAAATGGTTTCTTTTTCTGGAATTCT
GTTTTTTCATCTATTGTACGTTTTCTTGTCTTCCTTCAGGTCCGAATAAT
CACGACGCAGGCGATGGCAAAACTCCGGAACGGCTGCACCCCCGAGGAGC
GCGAAAAACTGATGTCGTACCTCTCCATCTACAAGCCGAAGTCGGCCGAC
TACAGCAAGAGCATGTACAACCCTGTCAAGAGTAAGAGCAGGCGCAACGC
GAGTAGCGGCAGCGGCAGCAGTAGCAGCGTCGGGACGTTCGGCGATGTTA
CCCACGACATGGGCGGGGGGGCCAGAGAGACCACCAGTGCGAACGCCGCC
GCCGCCGCTGCGGCTGCCGGCCGCGACAGCAGGGGCCAGGAGCGTCGGGG
TGTGTGGGAAGCGACAACGGAAGCGCAGGTGGCCGGCGGGCGGCGGCCGT
ACAATGGGTTTGAATCCAGGTCAGCCACGGCGGCAGAAGTTGAAGGTCGG
CGGCAGCGACGGCGTGGGTGATGCCGCGGCCGACAGCAGCCGCAGCCGCA
GCAGGAACGAAGAGAGAAAGCTCTGGGACTTCTCGAAGCACGGGCAGGAG
GAGCTGCAGCAAGAGCTGTCGCGGTACCTGAGGAGGCACCGCCTTTCGAA
GAAGAACGCCGAGAAGGCCGCCATTCTCGCCGCGGAAAGGGCCGCCGCCT
TGGCCGCCGAAGAGGGGGAGAAGGTCGACACTGGCACGGCGAGGAGAAAA
ACTTTGCCAACTCCGGCGGCAGCGGCGGCCCCGCCAATAGCCGCCCCTGT
CACCGCCGCCACCGCTCCCACCCCTCGCCGCCGCGTCAGCAGCGAGACGA
AGCTGATGCGATATAGAGGCAGCGCTGTCGATCTCGCGCGACGGCAGCGG
GAAGAGCGGCGACGCGAGCTTGAGAAGCGCGCGAGAGAGACGGAGCGAGA
GTACGAGAGGCAGCGGTCGCTGAGGCCGATCCCCGTCGGCGACGGGGCGT
TGGGCGCCGTCGTTGGAGACGTCGAGCCGGCTCCCAACAGCCGGGAGGCT
GACCAGCTGGAATACCTCAGCCGGTTGCTGTGGGACGGGGAGGAAGAGCC
CGAAGACTTCGCCCTGTCGTATGGCAAGCAGCCTGGGAGGCGGTCGCTTC
AGTAGGTGAATCATACTTGTTTCTGTTGTTTTTTTTCAATAGTTTTGTGT
TCGCTGTCGAATCACAGCTGTTGGGTCGCCAGCGCACCTTGCTGGTGATT
TGCGTTCTGATGTCATGACCCAAAATGGCGTCAAACAAGACTCAGAGTAG
GGCAAGGGTGAGTCCGGGGGAGGGGGAGGGCGCGGAGGGCGGGAGGCTTG
AACCATCCATGCAACCTGCATTTGGTTAAATTTTGTGTTTGGGGCGATGG
AAGAGGTTCGGAATACATTGGAAGGGTGACGCTTGAAACGAGCGTGAGAG
CGACAGCGGGTGAACCCCCGAGCCGGCCACCGATCGCAGCCTTTCAGGCA
CCGGAAGGCGGAGGAGAATCAACTTTTGTTGTGGATTTCTGTTTATTCAT
TTTACCCCGTTGAGGACGTCGATTGCCATTATATAAATAGGTCGAGCCTC
AACGTGAACGGGCGGCTGAATGCTTCAGTGCTTGCTGTACTGCTTGCTGT
GCTATGCTTTTCTCTGCTGCTGGTGCTGCTGCTACTGCTGCTGCAGTTCA
CTCTGCTGTTTTCGTCTGAATAACCTCTGTGCTCGCCTGGAAAACAAGTG
TGCGGAGGCTGCATCCATTCCGGTGTTGTATGAGGTTTGCTGTCCCATGT
TCTGTGCGTCATGTTTTGTGCTTCGAGCTGATACAACAGTATCCGTTGCT
GTCTCACCCAGCGCACCCTCGAAGCAGCATGCAGGCAACGCTCAGAGAAG
GAGGTATCCAATTCAGCGCGTGCGTGTCGAGAGAGCCGACGCGTTTTGAT
TCTGTCCGGTCGATCTGTTGCTTGCATCCCGTTTGTTTGTTTTGTCTCTC
GGTTGCGAGGTGATCTTTCGCTTCACTATTTTCATTTTGGCTAATGCGGT
CACTTCACCACAAGCTTGGGACCTTGCCATGCGCCGAAAAATACGCGTGT
CTGCAAGCAAACCGGCCCCCGCCCCCCCGTGTCGCGTGTGTGGGGAAGAG
GTTTGAGGTAAACGCTGCTGGTGGGACTCATGGGTTTGTGTTAGTTCGCT
TCCGTTTGCCTTTGTTGGTGGGCCTTCTTCTCCCTTGTCAGCCGTCTGTT
TCATTTTTGCCCCCCCCATCTTGCTTCTTTCATTGTGAATGTGGCACGCG
TACGAGCGGTTACTGTCTCCCTCCCCACTACGATGGAAGAACGAAATAGA
TTATAGATCTGCAGGGTTACAATCTGCTGCCGCCGTCCTTCCTCGTTGTT
TTGCGTCCTCTTTGTTAGAAAGGTCATCTCGCGAGTAGGCGCTGCGTGTG
CTCCTGCGAGATTTGGGTAGAGTTTTTTTTCTTTTCCTGGAACGTCTGTC
TCTCCATTTTGCTCTTCATTCAATATTTCTTGTGCGCGCGGGTTTGTGCG
CTGAGGTGGGGCGGGTAGGGGAATAGTGCGGGTAGTACTTACAAACGACA
AATTTCCTGACTCGGCTCAGAATGAGAGGGAGGGGCAGCCTCGTTGGCTT
GGCGATGAAGACACGTTTTTCGCTGTCGAGCTTCTCTTCCTCGCATCCAT
TGCTTCCTTGGGCCCATGTCCATTCCAGAACAGTCGTTTCGTCGTCGTAC
AGGTGGTCTGCTTTAAAATCAAATTACTATTGGAAAGGTTTTGGCCGATG
ATCACAAGGGAGGGAGGTTTCTTCGTGACGCGTGGGAGGGTGGAGCGCTG
GCAAAAAACATGTTGCTTCTTTTGCTAGATCAAGACAACGGAAGCGTCGG
ACACGAAGAAGGCACTGGGGAGAGAGGGTGGAAAGTGACGCGAGAAAGAA
AGCGTCGAGTCAATCAAATTTCGCAGAGGGCCCAGGCGGGCAGGCACGGA
GGGAAAAGTTCGGCCGTCAGGGATGAAAAAGCACTCTCTTGGGGGGATAT
TATGCGCGGAACGGTTGATTGATGATTATTGGGTCCGTTAAAAATTGTGA
TTTATTTCACGTCGAACGAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:5384178..5393697-

>mRNA_P-fluviatile_contig1.486.1 ID=mRNA_P-fluviatile_contig1.486.1|Name=mRNA_P-fluviatile_contig1.486.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3534bp|location=Sequence derived from alignment at P-fluviatile_contig1:5384178..5393697- (Porterinema fluviatile SAG_2381)
ATGGGACGGCGGCCAACCACTACGTTGGTACAACAACGGCAGATGCTTCG
CGCCTGGCTGATCCTGAGCATTCCAGCCATGCGTTGCGCCTACCTGGGCG
GTTGCAGAGGAGTGGATTCGTTCGCGGTGCCGGGACGGTTGCGGCAGCAG
CAGGGGCTGCTTGATAGCAGACGCGCATGTTCGAGGGGTGGCATCCAGCG
CGTGAAAAGGAGGAGATGGGACGGCGGCCAACCACTACGTTGGTACAACA
ACGGCAGATGCTTCGCGCCTGGCTGATCCTGAGCATTCCAGCCATGCGTT
GCGCCTACCTGGGCGGTTGCAGAGGAGTGGATTCGTTCGCGGTGCCGGGA
CGGTTGCGGCAGCAGCAGGGGCTGCTTGATAGCAGACGCGCATGTTCGAG
GGGTGGCATCCAGCGCGTGAAAAGGAGGAGGGCACGCTGCTTGGCGATGG
ACGCGGAGGGGGGGGCCGGGGGCGGAACAGCGGAAGTTACGGTGCCGCTG
CCGGAGACATACAGCCGGAACGGGCGGTGGACGGTCTACAGCAGCGGCGG
GCGCAACCAACCCCAAAACGGTCGAGATCCGAATCGGGTCCTATCGAAGG
AGGCCCAGGCCAAGAGAGAAAGGGAGTACCAGCTCGGCACCAAGGGCACG
CTGCTTGGCGATGGACGCGGAGGGGGGGGCCGGGGGCGGAACAGCGGAAG
TTACGGTGCCGCTGCCGGAGACATACAGCCGGAACGGGCGGTGGACGGTC
TACAGCAGCGGCGGGCGCAACCAACCCCAAAACGGTCGAGATCCGAATCG
GGTCCTATCGAAGGAGGCCCAGGCCAAGAGAGAAAGGGAGTACCAGCTCG
GCACCAAGATCCAGAGGATGGTGCGGCTGCAGAAGCTGAAGGTCGACATG
ATGCCGCCGGCGGCAGCAGGCCGGCCAGCAGGGGCAACGACGACGGGGGG
GGGCGGGGGCGGCAGTAGTGGAGTTAGCAATGAGGCGTGGGCGGCGGCGG
CCGGGGAGTCGGTCGAGACGCTCCGGCTTGCTCTGGAGGAGGGCGCAAGC
GCCAAACAGGAAATGGATCCAGAGGATGGTGCGGCTGCAGAAGCTGAAGG
TCGACATGATGCCGCCGGCGGCAGCAGGCCGGCCAGCAGGGGCAACGACG
ACGGGGGGGGGCGGGGGCGGCAGTAGTGGAGTTAGCAATGAGGCGTGGGC
GGCGGCGGCCGGGGAGTCGGTCGAGACGCTCCGGCTTGCTCTGGAGGAGG
GCGCAAGCGCCAAACAGGAAATGGTTGTGAGCAACCTCAGCCTGGTGGAC
ATCATCGTCAAGAACTACGTGAGCACGTTCTCATACGGGAGGTTCACCGA
GGGGGACCTCAAGCAGGACGCGACGGTCGGGCTCATCCGAGCCGTGGAGA
AGTTCGACCCGGAGAGGGGTTTCCTGTTCTCCACCTACGGCCGCTGGTGG
GTAAGGAAATTCCTCCACGAGGGGGTCAAGAACCACGACCGGCTGGTGCG
GATACCCAACAGCGCGGCCTACCGGATCGCCAAGTTGTGAGCAACCTCAG
CCTGGTGGACATCATCGTCAAGAACTACGTGAGCACGTTCTCATACGGGA
GGTTCACCGAGGGGGACCTCAAGCAGGACGCGACGGTCGGGCTCATCCGA
GCCGTGGAGAAGTTCGACCCGGAGAGGGGTTTCCTGTTCTCCACCTACGG
CCGCTGGTGGGTAAGGAAATTCCTCCACGAGGGGGTCAAGAACCACGACC
GGCTGGTGCGGATACCCAACAGCGCGGCCTACCGGATCGCCAAGGTGAAA
CGCGTCCGAGCGGAGCTCGAAGCCGAGCTCGGCCGGGCCCCCACTAAACC
GGAGCTGGCCTTGGAGGCGGGCTTGACGGTGCAGCAGGTCGAGGCTTCTC
TGGAGCAGGTGAAACGCGTCCGAGCGGAGCTCGAAGCCGAGCTCGGCCGG
GCCCCCACTAAACCGGAGCTGGCCTTGGAGGCGGGCTTGACGGTGCAGCA
GGTCGAGGCTTCTCTGGAGCAGGATTCGTTCTACATCGAGCGCCTCGACC
GGCTCCTGGGCCATGGAATCGGGCTGGCGGACAACATTTTCGCCTCGAAC
TACGGGGAGTCGTTCCTGTACGGGAAGGACATGCTGGGGCCGCATCCGGG
GGAGTCCCTCCAGCCGACCGCGGAGGGGTCTAAGGTCATCCAGGATTCGT
TCTACATCGAGCGCCTCGACCGGCTCCTGGGCCATGGAATCGGGCTGGCG
GACAACATTTTCGCCTCGAACTACGGGGAGTCGTTCCTGTACGGGAAGGA
CATGCTGGGGCCGCATCCGGGGGAGTCCCTCCAGCCGACCGCGGAGGGGT
CTAAGGTCATCCAGGTCTCGCTCAGGCAGGACCTTTCCAGCGCGTTCGTG
CGGCTGCTAGACTCCACGGAGACGGAGTGCCTGGTGCTGCGGTACGGGCT
GCACGACGGTGTGACCAACTCCATCGAAGAAGTGGCCGAAATCATGGACT
TCTGTGACCCCGACGACGTCTCGCTCAGGCAGGACCTTTCCAGCGCGTTC
GTGCGGCTGCTAGACTCCACGGAGACGGAGTGCCTGGTGCTGCGGTACGG
GCTGCACGACGGTGTGACCAACTCCATCGAAGAAGTGGCCGAAATCATGG
ACTTCTGTGACCCCGACGACGTCCGAATAATCACGACGCAGGCGATGGCA
AAACTCCGGAACGGCTGCACCCCCGAGGAGCGCGAAAAACTGATGTCGTA
CCTCTCCATCTACAAGCCGAAGTCGGCCGACTACAGCAAGAGCATGTACA
ACCCTGTCAAGAGTAAGAGCAGGCGCAACGCGAGTAGCGGCAGCGGCAGC
AGTAGCAGCGTCGGGACGTTCGGCGATGTTACCCACGACATGGGCGGGGG
GGCCAGAGAGACCACCAGTGCGAACGCCGCCGCCGCCGCTGCGGCTGCCG
GCCGCGACAGCAGGGGCCAGGAGCGTCGGGGTGTGTGGGAAGCGACAACG
GAAGCGCAGGTGGCCGGCGGGCGGCGGCCGTACAATGGGTTTGAATCCAG
GTCAGCCACGGCGGCAGAAGTTGAAGGTCGGCGGCAGCGACGGCGTGGGT
GAGTCCGAATAATCACGACGCAGGCGATGGCAAAACTCCGGAACGGCTGC
ACCCCCGAGGAGCGCGAAAAACTGATGTCGTACCTCTCCATCTACAAGCC
GAAGTCGGCCGACTACAGCAAGAGCATGTACAACCCTGTCAAGAGTAAGA
GCAGGCGCAACGCGAGTAGCGGCAGCGGCAGCAGTAGCAGCGTCGGGACG
TTCGGCGATGTTACCCACGACATGGGCGGGGGGGCCAGAGAGACCACCAG
TGCGAACGCCGCCGCCGCCGCTGCGGCTGCCGGCCGCGACAGCAGGGGCC
AGGAGCGTCGGGGTGTGTGGGAAGCGACAACGGAAGCGCAGGTGGCCGGC
GGGCGGCGGCCGTACAATGGGTTTGAATCCAGGTCAGCCACGGCGGCAGA
AGTTGAAGGTCGGCGGCAGCGACGGCGTGGGTGA
back to top