mRNA_P-fluviatile_contig1.476.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.476.1
Unique NamemRNA_P-fluviatile_contig1.476.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.476.1 vs. uniprot
Match: A0A6H5JLS0_9PHAE (Rhomboid domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS0_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 5.620e-133
Identity = 198/246 (80.49%), Postives = 219/246 (89.02%), Query Frame = 2 
Query:  299 GLSALGSRTRGLSSFIPRGGGLSDSMVVNGLVGLNLAGTVAFYLNETQGIGGSFLLSNFLVSTYTTLSQGKLHTLITSNFSHSNLWNGAIFTYMLYTLGPMAIQSLGRRQFLALYLLGGTFSQLCQVAGPGVARRLGLPTVLQVDPFFISSGGSGATLALLAWYCASFPGSNIILLVFPVQTGVAGALYLAATLYPVVTNGAGAIPFLGGPTQEIWRTLGAISAGVLVALASRGRGGGRYKFIQRY 1036
            G   +G+  R LSSF+PRGG  SDSM+V G+VGLN+AGTVA YL+ETQG GG FL  NF+VSTYTTL QG+LHTL+TSNFSHSNLWNGAIF+YM+YTLGP AIQ LGRRQFLALYLLGG FSQLCQVAGPG+A RLGLP+VLQVDP++ SSGGSGATLA+LAWYCASFP S IILLV PVQTGVAGALYL ATLY VV+NGAG +PFLGGPTQEIWRTLGA +AGV+VALASRGRGGGRYKFIQRY
Sbjct:  111 GRRGVGAGNRALSSFLPRGGRYSDSMIVYGVVGLNVAGTVAIYLHETQGAGGPFLFGNFMVSTYTTLMQGRLHTLLTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPGIASRLGLPSVLQVDPYYFSSGGSGATLAVLAWYCASFPSSQIILLVVPVQTGVAGALYLGATLYQVVSNGAG-VPFLGGPTQEIWRTLGAAAAGVVVALASRGRGGGRYKFIQRY 355
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BLAST of mRNA_P-fluviatile_contig1.476.1 vs. uniprot
Match: D8LNG3_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG3_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 2.010e-124
Identity = 183/221 (82.81%), Postives = 200/221 (90.50%), Query Frame = 2 
Query:  374 MVVNGLVGLNLAGTVAFYLNETQGIGGSFLLSNFLVSTYTTLSQGKLHTLITSNFSHSNLWNGAIFTYMLYTLGPMAIQSLGRRQFLALYLLGGTFSQLCQVAGPGVARRLGLPTVLQVDPFFISSGGSGATLALLAWYCASFPGSNIILLVFPVQTGVAGALYLAATLYPVVTNGAGAIPFLGGPTQEIWRTLGAISAGVLVALASRGRGGGRYKFIQRY 1036
            MV+ G+VGLN+AGTVA YL E+QG GG FL  NF+VSTYTTL QG+LHTL TSNFSHSNLWNGAIF+YM+YTLGP AIQ LGRRQFLALYLLGG FSQLCQVAGPG+A RLGLP+VLQVDP++ SSGGSGATLA+LAWYCASFP S IILLV PVQTGVAGALYL ATLY VV+NGAG +PFLGGPTQEIWRTLGA +AGV+VALASRGRGGGRYKFIQRY
Sbjct:    1 MVIYGVVGLNVAGTVAMYLYESQGTGGPFLFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPGIASRLGLPSVLQVDPYYFSSGGSGATLAVLAWYCASFPSSQIILLVVPVQTGVAGALYLGATLYQVVSNGAG-VPFLGGPTQEIWRTLGAAAAGVMVALASRGRGGGRYKFIQRY 220
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BLAST of mRNA_P-fluviatile_contig1.476.1 vs. uniprot
Match: A0A6V1XU43_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XU43_HETAK)

HSP 1 Score: 95.5 bits (236), Expect = 1.520e-18
Identity = 68/203 (33.50%), Postives = 98/203 (48.28%), Query Frame = 2 
Query:  323 TRGLSSF-IPRGGGLSDSMVVNGLVGLNLA--------GTVAFYLNETQGIGGSFLLSNFLVSTYTTLSQGKLHTLITSNFSHSNLWNGAIFTYMLYTLGPMAIQSLGRRQFLALYLLGGTFSQLCQVAGPGVARRLGLPTVLQVDPFFISSGGSGATLALLAWYCASFPGSNI-ILLVFPVQTGVAGALYLAATLYPVVTNG 901
            +R  SSF +P G       V+ G++G NLA         + AFY +  +     F+  NF +S    ++Q KLHT+ITS FSH  L +  +    L+  G  AI  LG + FL LY+ GG  S  C +    V    G+P  L + P+  S G SGA  A + W C  FP   + I ++ PV   V G L++   L+ +   G
Sbjct:   50 SRSFSSFTLPSG-----ERVLYGIIGANLAVFGLWNAAESDAFYQHSWRA--RKFMHDNFTMSAQGVVNQLKLHTMITSTFSHRELGHLLMNMVTLFFFGREAIMILGTKSFLKLYVYGGLTSSACHLGWSMVGPYAGVPGSLMISPYQKSLGASGAVNATVLWSCLMFPARTVYIYMILPVPAAVLGILFVGKDLWGLYEGG 245
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BLAST of mRNA_P-fluviatile_contig1.476.1 vs. uniprot
Match: A0A7S0EHB7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EHB7_9CRYP)

HSP 1 Score: 79.3 bits (194), Expect = 1.280e-12
Identity = 64/207 (30.92%), Postives = 99/207 (47.83%), Query Frame = 2 
Query:  407 AGTVAFYLNETQGIGGSFLLSNFLVSTYTTLSQGKLHTLITSNFSHSNLWNGAIFTYMLYTLGPMAIQSLGRRQFLALYLLGGTFSQLCQVAGPGVARRLGLPTVLQVD--PFFISSGGSGATLALLAWYCASFPGSNIIL-LVFPVQTGVAGALYLAATLYPVVTNGAGAIPFLGGPTQEIWRTLGAISAGVLVALASRGRGGGRY 1018
            A  V F L + + +   F+ ++F +ST       KLHTL+TS FSH + WN       L+  G   +  LG ++FL LYL GG  S +C V  P V+ R    T    D  P F     +GA  A++A+   + P   ++L +V P+   + GAL++   ++ V+T         G  +     +LG   AG+     +RG GG R+
Sbjct:  143 ANCVVFVLWQNRNLQ-YFMWNHFTISTSGIFQDFKLHTLLTSIFSHPHFWNLFANMVTLWFFGAECLALLGAKRFLQLYLAGGLTSSVCHVVWPIVSPR----THRAADRRPQF---SATGAVNAMVAYSILTLPQRTVLLYMVIPIPASLLGALFIGKDVWAVMT---------GDSSYGNAGSLGGSLAGIYFWYMTRGVGGRRF 332
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BLAST of mRNA_P-fluviatile_contig1.476.1 vs. uniprot
Match: UPI00199EF9F0 (Rhomboid family intramembrane serine protease n=1 Tax=Bdellovibrio sp. TaxID=28201 RepID=UPI00199EF9F0)

HSP 1 Score: 75.1 bits (183), Expect = 6.540e-12
Identity = 52/174 (29.89%), Postives = 88/174 (50.57%), Query Frame = 2 
Query:  389 LVGLNLAGTVAFYLNETQGIGGSFLLSNFLVSTYTTLSQGKLHTLITSNFSHSNLWNGAIFTYMLYTLGPMAIQSLGRRQFLALYLLGGTFSQLCQVAGPGVARRLGLPTVLQVDPFFISSGGSGATLALLAWYCASFPGSNIILLVFPVQTGVAGA-LYLAATLYPVVTNGAG 907
            LV +N+A  +A+ L+    +   F+ +NFLVS +++++QG++ TLITS FSH+   +     Y+L + GP+    LGR +FL  Y + G  S LC  A         +   L  +P   + G SGA   ++  +   FP   I+L  F     + GA L++   ++ ++    G
Sbjct:    7 LVIMNIAVFIAWQLSRNDEVRYLFMANNFLVS-WSSITQGRVWTLITSVFSHNAFLHLFFNMYVLDSFGPIVESVLGRARFLKFYFIAGVISSLCHAA---------VSAFLLHEPGLPALGASGAISGMIFLFALLFPKQKILLFGFVPTPALWGAFLFVGLDIWGLIAQAEG 170
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BLAST of mRNA_P-fluviatile_contig1.476.1 vs. uniprot
Match: A0A8K0JHW0_9TREE (Uncharacterized protein n=2 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JHW0_9TREE)

HSP 1 Score: 75.5 bits (184), Expect = 2.940e-11
Identity = 67/195 (34.36%), Postives = 87/195 (44.62%), Query Frame = 2 
Query:  458 FLLSNFLVSTYTTLSQGKLHTLITSNFSHSNLWNGAIFTYMLYTLGPMAIQSLGRRQFLALYLLGGTFSQLCQVAGPGVARRLGLPTVLQVDPFFISSGGSGATLALLAWYCASFPGSNIILL-VFPVQTGVAGALYLAATLYP------VVTNGAGAIPFLGGPTQEIWRTLGAISAGVLVALASRGRGGGRYK 1021
            ++  NF+VS    L+ G+LHTL+T  FSHSN  + A+    LY +GP     LG   FL LYL GG  S +  +A   +                 S G SGA  A LA+Y A FP +  +L  V P+    A     A  LY        VT+ AG +              G + AGV  A  SRGRGG R +
Sbjct:  179 WMSQNFIVSE-ANLAAGRLHTLLTCCFSHSNTGHIALNMLGLYFIGPATAGLLGPASFLGLYLGGGIVSSMVSLAWHRMMSS-------NRSKSHGSEGASGAIYASLAYYAAMFPQAQFLLFFVVPLPAWAAVGGIFAYDLYSSIRSPMAVTDSAGHV--------------GGLLAGVAYAFRSRGRGGPRMR 351
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BLAST of mRNA_P-fluviatile_contig1.476.1 vs. uniprot
Match: A0A7S2TI75_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TI75_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 1.500e-10
Identity = 50/165 (30.30%), Postives = 81/165 (49.09%), Query Frame = 2 
Query:  497 LSQGKLHTLITSNFSHSNLWNGAIFTYMLYTLGPMAIQSLGRRQFLALYLLGGTFSQLCQVAGP---GVARRLGLPTVLQVDPFFISSGGSGATLALLAWYCASFPGSNIILLVFPVQTGVAGALYLAATLYPVVTNGAGAIPFLGGPTQEIWRTLGAISAGVLV 982
            ++ G++HTLITS FSH   W+ A+  + L + GP+ +  +G   F+  YL  G  S +  +A P    + R+   PT+L V     S G SGA  ALLA +   FP   ++++ FP  +  A  ++ A   +  +    G   F+G         LG ++ G L+
Sbjct:   99 VASGRVHTLITSVFSHKEFWHYALNMFALTSFGPVLVDIMGNEHFMKFYLGSGVLSSVVGIAVPLAQWIVRKQ--PTILAVP----SLGASGAVFALLATWTQVFPHERLMIVFFPFVSVEAQQIFPAIVAFDTLGCLYG---FVGNSFLNHGAHLGGMACGYLM 254
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BLAST of mRNA_P-fluviatile_contig1.476.1 vs. uniprot
Match: Q5KLG1_CRYNJ (Rhomboid domain-containing protein n=4 Tax=Cryptococcus neoformans TaxID=5207 RepID=Q5KLG1_CRYNJ)

HSP 1 Score: 67.4 bits (163), Expect = 1.180e-8
Identity = 63/194 (32.47%), Postives = 90/194 (46.39%), Query Frame = 2 
Query:  377 VVNGLVGLNLAGTVA--FYLNETQGIGGS----FLLSNFLVSTYTTLSQGKLHTLITSNFSHSNLWNGAIFTYMLYTLGPMAIQSLGRRQFLALYLLGGTFSQLCQVAGPGVARRLGLPTVLQVDPFFISSGGSGATLALLAWYCASFPGSNIILL-VFPVQTGVAGALYLAATLYPVV---TNGAGAIPFLGG 928
            +V GL+G+N A  +   + L+  Q         FL +NF+++     S G++ TL+TS FSHSN  +  +    LY L P A   +G   FL LYL  G FS L  +     +R            ++ S G SGA  A LA+Y A FP S +++  V P+   VA     A   Y  V    +G  +   LGG
Sbjct:  126 LVYGLIGINGAVFLLWQYALSSAQRFRDPSLLYFLRNNFILNEVNVFS-GRIWTLVTSAFSHSNGTHIFVNCLGLYFLAPAAASIMGSASFLGLYLGAGVFSSLVSLGYHRFSRHR----------WWGSEGASGAIYACLAYYGALFPNSQVLMFFVIPMPVWVAIGGIFAWDFYSAVQRPNSGTDSAGHLGG 308
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BLAST of mRNA_P-fluviatile_contig1.476.1 vs. uniprot
Match: E6QYZ2_CRYGW (Rhomboid domain-containing protein n=3 Tax=Cryptococcus gattii species complex TaxID=1884637 RepID=E6QYZ2_CRYGW)

HSP 1 Score: 66.2 bits (160), Expect = 2.300e-8
Identity = 58/176 (32.95%), Postives = 85/176 (48.30%), Query Frame = 2 
Query:  377 VVNGLVGLNLAGTVA--FYLNETQGIGGS----FLLSNFLVSTYTTLSQGKLHTLITSNFSHSNLWNGAIFTYMLYTLGPMAIQSLGRRQFLALYLLGGTFSQLCQVAGPGVARRLGLPTVLQVDPFFISSGGSGATLALLAWYCASFPGSNIILL-VFPVQTGVAGALYLAATLY 883
            +V GL+G+N A  +   + L+  Q         FL +NF+++     S G++ TL+TS FSHSN  +  +    LY L P A   +G   FL LYL  G FS L  +     ++            ++ S G SGA  A LA+Y A FP S ++L  V P+   VA     A +L+
Sbjct:  126 LVYGLIGINGAVFLLWQYALSSAQRFRDPSLLYFLRNNFILNEVNVFS-GRIWTLVTSAFSHSNGTHIFVNCLGLYFLAPAAASIMGSASFLGLYLGAGVFSSLVSLGYHRFSQHR----------WWGSEGASGAIYACLAYYGALFPNSQVLLFFVIPMPVWVAIGGIFAVSLF 290
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BLAST of mRNA_P-fluviatile_contig1.476.1 vs. uniprot
Match: A0A261XU40_9FUNG (Rhomboid domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XU40_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 2.850e-8
Identity = 46/152 (30.26%), Postives = 75/152 (49.34%), Query Frame = 2 
Query:  455 SFLLSNFLVSTYTTLSQGKLHTLITSNFSHSNLWNGAIFTYMLYTLGPMAIQSLGRRQFLALYLLGGTFSQLCQVAGPGVARRLGLPTVLQVDPFFISSGGSGATLALLAWYCASFPGSN-IILLVFPVQTGVAGALYLAATLYPVVTNGAG 907
            SF+L+NF++S  + L  G+LHTLITS FSH    + AI   +LY++G   +++LG  +FL LY   G  + L  +A     R   +           + G SGA + +  ++  +FP +  ++  V P+       L+ A  +Y   T   G
Sbjct:  117 SFMLNNFVLSD-SNLRAGRLHTLITSFFSHRETGHLAINMLVLYSIGGGVLEALGTLRFLGLYGASGVAAGLAHLAYTSYIRPYIIGARRGSKSLSGTIGASGAVMGITTFFACAFPRATFLVFFVVPMPAIAVVGLFAAYDIYRAATIAPG 267
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLS0_9PHAE5.620e-13380.49Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
D8LNG3_ECTSI2.010e-12482.81Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
A0A6V1XU43_HETAK1.520e-1833.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0EHB7_9CRYP1.280e-1230.92Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
UPI00199EF9F06.540e-1229.89Rhomboid family intramembrane serine protease n=1 ... [more]
A0A8K0JHW0_9TREE2.940e-1134.36Uncharacterized protein n=2 Tax=Filobasidium flori... [more]
A0A7S2TI75_9EUKA1.500e-1030.30Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
Q5KLG1_CRYNJ1.180e-832.47Rhomboid domain-containing protein n=4 Tax=Cryptoc... [more]
E6QYZ2_CRYGW2.300e-832.95Rhomboid domain-containing protein n=3 Tax=Cryptoc... [more]
A0A261XU40_9FUNG2.850e-830.26Rhomboid domain-containing protein n=1 Tax=Bifigur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5262975..5268373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score73.6
Seed ortholog evalue2e-10
Seed eggNOG ortholog109760.SPPG_03485T0
KEGG koko:K09650
EggNOG free text desc.rhomboid-domain-containing protein
EggNOG OGs3A5ZS@33154,3Q6XA@4751,COG0705@1,KOG2980@2759
EC3.4.21.105
COG Functional cat.T
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionPeptidase S54, rhomboid domain
Ec32 orthologEc-04_003970.1
Exons7
Model size1342
Cds size1008
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.9864795-UTR-P-fluviatile_contig1:5262974..52632771622815340.9864795-UTR-P-fluviatile_contig1:5262974..5263277Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5262975..5263277 -
1693561553.9458396-UTR-P-fluviatile_contig1:5262974..52632771693561553.9458396-UTR-P-fluviatile_contig1:5262974..5263277Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5262975..5263277 -
1622815341.0754461-UTR-P-fluviatile_contig1:5268342..52683731622815341.0754461-UTR-P-fluviatile_contig1:5268342..5268373Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5268343..5268373 -
1693561554.0329056-UTR-P-fluviatile_contig1:5268342..52683731693561554.0329056-UTR-P-fluviatile_contig1:5268342..5268373Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5268343..5268373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815341.00078-CDS-P-fluviatile_contig1:5263277..52635061622815341.00078-CDS-P-fluviatile_contig1:5263277..5263506Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5263278..5263506 -
1693561553.9587636-CDS-P-fluviatile_contig1:5263277..52635061693561553.9587636-CDS-P-fluviatile_contig1:5263277..5263506Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5263278..5263506 -
1622815341.0114808-CDS-P-fluviatile_contig1:5264028..52641111622815341.0114808-CDS-P-fluviatile_contig1:5264028..5264111Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5264029..5264111 -
1693561553.9759865-CDS-P-fluviatile_contig1:5264028..52641111693561553.9759865-CDS-P-fluviatile_contig1:5264028..5264111Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5264029..5264111 -
1622815341.0243077-CDS-P-fluviatile_contig1:5264907..52649661622815341.0243077-CDS-P-fluviatile_contig1:5264907..5264966Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5264908..5264966 -
1693561553.9859607-CDS-P-fluviatile_contig1:5264907..52649661693561553.9859607-CDS-P-fluviatile_contig1:5264907..5264966Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5264908..5264966 -
1622815341.034175-CDS-P-fluviatile_contig1:5265827..52659491622815341.034175-CDS-P-fluviatile_contig1:5265827..5265949Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5265828..5265949 -
1693561553.997175-CDS-P-fluviatile_contig1:5265827..52659491693561553.997175-CDS-P-fluviatile_contig1:5265827..5265949Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5265828..5265949 -
1622815341.0437415-CDS-P-fluviatile_contig1:5266803..52668831622815341.0437415-CDS-P-fluviatile_contig1:5266803..5266883Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5266804..5266883 -
1693561554.005837-CDS-P-fluviatile_contig1:5266803..52668831693561554.005837-CDS-P-fluviatile_contig1:5266803..5266883Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5266804..5266883 -
1622815341.0535429-CDS-P-fluviatile_contig1:5267577..52676461622815341.0535429-CDS-P-fluviatile_contig1:5267577..5267646Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5267578..5267646 -
1693561554.0144486-CDS-P-fluviatile_contig1:5267577..52676461693561554.0144486-CDS-P-fluviatile_contig1:5267577..5267646Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5267578..5267646 -
1622815341.0634391-CDS-P-fluviatile_contig1:5267976..52683421622815341.0634391-CDS-P-fluviatile_contig1:5267976..5268342Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5267977..5268342 -
1693561554.0234764-CDS-P-fluviatile_contig1:5267976..52683421693561554.0234764-CDS-P-fluviatile_contig1:5267976..5268342Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5267977..5268342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.476.1prot_P-fluviatile_contig1.476.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5263278..5268342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.476.1

>prot_P-fluviatile_contig1.476.1 ID=prot_P-fluviatile_contig1.476.1|Name=mRNA_P-fluviatile_contig1.476.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=336bp
MLSARLSCVPIRQASVGFRRWPPGKPQSVIPLARTASASVTTSSYITAAA
NGRSIGRNSVGFIGRGMSNCARSTWARLSAVSRAPNKSTGLSALGSRTRG
LSSFIPRGGGLSDSMVVNGLVGLNLAGTVAFYLNETQGIGGSFLLSNFLV
STYTTLSQGKLHTLITSNFSHSNLWNGAIFTYMLYTLGPMAIQSLGRRQF
LALYLLGGTFSQLCQVAGPGVARRLGLPTVLQVDPFFISSGGSGATLALL
AWYCASFPGSNIILLVFPVQTGVAGALYLAATLYPVVTNGAGAIPFLGGP
TQEIWRTLGAISAGVLVALASRGRGGGRYKFIQRY*
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mRNA from alignment at P-fluviatile_contig1:5262975..5268373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.476.1 ID=mRNA_P-fluviatile_contig1.476.1|Name=mRNA_P-fluviatile_contig1.476.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5399bp|location=Sequence derived from alignment at P-fluviatile_contig1:5262975..5268373- (Porterinema fluviatile SAG_2381)
TTTGTGTCAGCGAGATCCTTAGTTCAGGAAAATGTTGTCCGCTCGGCTTT
CATGCGTTCCCATCCGCCAAGCTTCGGTGGGGTTCAGAAGATGGCCACCC
GGAAAACCTCAATCAGTCATCCCTCTCGCCCGTACGGCATCCGCGTCAGT
CACAACCTCTTCCTACATAACAGCAGCAGCAAATGGACGTTCCATTGGAA
GGAATTCAGTCGGATTCATAGGGAGGGGCATGAGCAATTGCGCACGTAGC
ACTTGGGCACGCTTGAGTGCTGTCTCCCGAGCTCCCAACAAATCCACGGG
ACTGTCAGCTTTGGGCTCACGCACTCGGGGCTTGTCGTCCTTCATCCCTC
GAGGAGGGGGCTTGTCGGACTCCATGGTCGTCAACGGGCTGGTCGGGGTG
AGTGCATTGAATGATATCTGCTACGGTTTTATTTCCAGCACACAGCTCTG
ACTTTGAGCCGCAAGGGTGCGGGTGCTGTGTTCAGAAATACCGCGCAGGA
TCCTGCTGCAATATATGGCGTCAGAGTCATGAGCCAGCGAGGATGGCAGC
AAAGTTCCTGCCCCCGTTGTGTTCGTGTGTCCCCCTCTCTCTCTTCCCCT
TTCTCTCTTCCTCTTTCTCCTTTCCCCCGCCCTGCCGCTCGCTCCCGCTC
CCCCGCCTTGTTCCCGCCTTCTCTCCATCCATGCCCCGACCCCCTTTCGT
CCTCGCTCGTATTGCGCCACCTTGCAGCTCAACTTAGCCGGAACGGTAGC
ATTCTATCTCAATGAGACGCAGGGAATCGGCGGATCCTTTCTGTTGGTAA
GCACCGGTATGAGCAGGAGGTTGTAATCGGTTTGATTTTGAATGTGGATT
ATTCCGCTTCCACCCCCTATCTCAGACTTTTCTTTCATTGTTTTTTCCTG
TGGGAAAAAGTCGTGTTCGCCGTCGTTGTCTGCGTGTGGCTAGAATCACG
TAAAACACAGCAAGACGCGCGCGGGACAGCCAAGCTTCATTTCGGATTGG
GTCGAAATATCCCCTTCGAGGAACCGTTTTCATCGATCTAGTGGCAGCCA
TCTTGCTGCCACGTACGCGGTATACTCTGGCGAAAGTCTCACGGTGGTTT
CACGATGCCACACATTCCTGTCTTCAATGATGTCAGCTCTCTTTAAACAC
CGGGCACGGTGGAATTTGGTGGAATTTTGCTGGTCAGTGTAGATAAACCG
CGGCGAGCCCTTGATCGAGCAGTTCTTAACCAGCGACAACGAAACCTTCG
TTAGCTATCTTTTGCTTCGTCGTGACGGTGAGGAAAGTGAACAACAAGCG
GATCAAAATGCCCCTTCGTTGGCATTTGGCACTATGTTTCTGGCGGCGCC
TCCTTGCTTCTGACTCCCCGTGTCTCCTCGCTCTGGCACGTACTGTGTCA
CTCGATTTGGGGCCGGGGGTTCATCCCGTAGTAATATCATCCCCCTTCTC
ACTACCCCGCCCACCTTCAAACTCACGCGCGTGTCCACAGAGCAACTTCT
TGGTGTCGACCTACACTACGCTTTCGCAGGGAAAGCTGCACACCCTCATC
ACTTCCAACTTCAGCCACAGGTCCGATGAAGAACTTTCCGTGACCACGTC
GTATTGGATTTTTTTTTTTTGGACAGCTAGCTTCTCGAGCAGAAAAGTGG
CGCACTTGACGGCGTCCTCAAATGTCGTCGCAACGGGAATGACGCGCTCG
TCTCTGACGGAATGTGTTACGTTTTGTGTTGAGATGTTTTTTTGTAAGCC
ACCAGCGGTTGGTATTGGATTAGTACCCCGCGCGTACGACTGCGTTCTTG
GCACGCTGCCGCAGGCTCAGGCGGCGTCCTTGCCTACACAAGCAAACGCG
CGTCGATTGCATCTCGTGGGACCCGTGCTCTGGACCCACGGCATGGACTC
TGTGTGAAGGATTTTGATGCCTGGCGTATGCGTTCTTCTGCTTTTATTGC
GCTCAGTTAGACGATGCGGCGCGGTGCGACACGATGCAATGTGGAGCCTA
CAGCTGTTTTCGTGCTCGCCTTGCACCGGCTTCCGGCCCTTGCGATGTGT
TGCCCACCTCGTGTGTGTGCTTGCGTGCGTGCGCGTGTGTGCTTCCTTGC
GAAAAACGACCACGGTAACCGGCTGGCCCGAGGAAAGACGCCAGTCAGGG
ACCGACAACTAGAACATGCTTCCTAAATTGCCGAACCTTCCCGTCTGCGT
GTGTGTGTTTTGTGTGCGCGCATGAGTGCGTGAGTTCTGCGCGGCCCGCG
CTCTACGTTTTGATTATCCTCCCCTTTTGATCCTCGTGCTTCAGTAGCCC
TTGCCGCGTGCTTGTGGCTGTCCATCTGACGTCATGCTCAAGTCCGCCCG
CGTTGCCGGGGCTATCCCCATCCCATCCCCCGGCGTGGCACCGCATCGCA
ACCCGCAAACCACGACCAACAAAGCAACTTGTGGAACGGAGCGATCTTCA
CCTACATGCTCTACACGCTGGGGCCGATGGCGATCCAGAGCCTCGGCAGA
CGGCAGTTCTTGGCGCTGTACCTGCTGGGCGGGACTTTCTCGCAGCGTAA
GACGGCGTACCCTTCACGAGGGGTTCGGGGGGCATGCGTTCGTGACATTC
CGCGTGGTGCCAGTTTTCGGGCGTTGACTTTGATGGGTTCCTCAGGCACG
GAGCTTTATTTTCTTCCTTCCTTGCCTGGCGGCCCTCTTGCTTCACGTTC
ATGTAGATGTCCATCGCTTCTGTGTTTTGCGTTGCGCGCGAGCTTCACCA
CAGTGGAATGAATCTACCAGCACGTATTAAGTGCTCGGTGTACCGTCCTG
GCTTCGAACTCTCTCTTGGCCATACCTCGACGAAGAAATTGGGCTCGTTT
TTTTGTCCTCTGGGTAGAGTACTTGTCGTTCATCCACAGTCCCTGTCCGG
CGGCCCCCGATTCCGGGAAATCTGAAGTCCGTCTCTTGTGCAGTCCTCGA
ACGGCCAGCCCCGCTGCTTCTCATGATATTCTGCCAATCTGTGTTTCCCC
CTTTTGGATTGTCGCTTCCTTTTTCCCCGCTTATCTCTCTGTCTCTCTAC
GTGTCTTCCCAGAAACCAAAACGAGAAAAGTCAAACGCCAAACAAGAAAC
AAAAGACTATCCGCTCATGAGAAAAAGCACCCGCCTACGTCTTGCGTTTT
TTTCCGCTTCACATGCTATGTTTTTTTCATCTGTCCCTGCCTCTATCTTT
GTTGTTTCCATTTTTTCTCCAAGGGTCCCTCCCTTACCCCTTCCTCTCGC
GTTTTACGTCTTCTCCTCGATCCCCGTGTTTGTGCTTTTGTCTTGTGGGT
GGACGTCGCTCGCTTGTTCCACCGATCTGCTTTCATTATTTTTCTCAATT
TTCGTGTACATCCGCGCGTCTGGCTTCGTTCTTTTCTGGCCAAATTTCGC
CGACAAGTGTGCCAGGTGGCGGGGCCAGGAGTCGCGCGACGGCTGGGTCT
CCCGACAGTCCTGCAGGTGAGAATTCTGTTGGCGTTCGTGTTCAAAGTCG
AGCGGAAAGCTTGTCCCGGTGGTGGTACGCGACCCGTTTGCGCCGGGTGT
AATTCCCTTCGGAGGCTCGACCGGTACCACTTGCGAAAAACAGAGTGTCG
CCCAGCGTGTTTGATTCGATTTAGCGTCGGCGGTGGGTGTTGTGAGGAAC
GGCTTTTTCCTCTGAGCATGTGCAATAGGGCGAAGCCCATGTTGTTGTTA
ATTGTGGCCGCAGATGGAGGTGTGGGAATCCCGGGGAAGCCGAGGTTAGT
GCAGATTCACCTTCCTGCGCCCGCTGTTACGTGCTTTTCACTCGTTCGTG
TTGCATCTTGAATAGGTGACGTGTTGCAGGGGGAGGAAGCGTTCGTGTTT
TTTTTCTTCGTGGTGATTTTCTGTTCTTCTTGGTCCGTTTCAACGGCACC
ACCAGGTCGCGGTTTCTAGCAGTGCTGGCGGCAAGCAGTTGAAATAGTCT
GTAAAGAAGGGTGACTTTCTTAGATCTCATTCGCGCACCGAGGCTGTTAA
CTCCTCATCCCTCGGCATTTTGTTTCATTGTTGTGGACTTTTCTGGCTCT
TTTCTTAGCTGCCTTCGTTCAGTTTCCTCGGGCAAGCTTCCCTCTCTCAT
TTGATTCGTGTCGTGAATCATCCTTGCCCACTTTGTCCTGGTCATCTCCT
TGAGCTCATCTTGCATCTTGTTACCGGTCAGAACACCTACGTTGGATATC
AACCCCGTCTCTCTTCTCTTGCGCTCCTGTCGTATGAACGCCTGTCGCCT
TTTTTGCTGAAGGTCGACCCGTTTTTCATAAGCTCTGGGGGCTCCGGAGC
TACGCTGGCTTTGCTGGCGTGGTACTGCGCGAGCTTCCCCGGCAGGTGTG
TGGGTGTTCCCCTTGCAGCTTCACACGCTTGCTTGTATGCTGGGTGTGAC
TTCGAGTTGCTAACGTAGCGGAAAAGCCTCGGAGGGGTCGAGGGTTCCGC
CGACGATGTGATATTTTGTGCCGGCGACCGCCTAGCACGCTGATGAGAGA
AAACCGAGGAACAAAAACTCAGCAGCGCAGGAGGAGTCAGTGAGCACGGG
ACAGCTCCCGCGGGAAATAGCGTGTGGTGCAGGGCGCGAGCTTTCTGTTT
CTAGCTGTTGAGTTCCGACCTCTGGCAGTGCAGTTCAAGAATCCACGACG
ATATTGTAAGTCTTCCAGCAAACCGGTCTCACCTGAACAGGTCTGATTGA
ACAGAAATCCGATATGCCTCACCTCCGTAGCATTCAAGAAATGTTTTGTC
TCACCAAAATATGCTCTTGCGGCGGCGGCAGCGGCGGCTGTGTGACTAAC
TCGTTCTTATCCGCTCATTCTCTCCGGCGCCGACGGCGCCCTGGCGGGTC
CCCCGCCGCGCCCGCAGCAACATTATCCTTCTGGTGTTCCCTGTCCAGAC
CGGCGTCGCCGGTGCGCTGTACCTTGCCGCCACCCTGTACCCCGTCGTGA
CCAACGGGGCGGGAGCGATACCATTTCTTGGAGGACCGACTCAGGAGATC
TGGCGAACGCTGGGGGCGATCTCGGCCGGGGTGTTGGTGGCCCTTGCGTC
TCGCGGTCGGGGGGGCGGGCGGTACAAGTTTATCCAGCGGTATTGACTCG
ATTCCTCGTCGCTTTCTCCCACCCCAGTATCTTGCCAGCTTGGTGTTGTA
GGTGGCGTGGGATTTCCAGCGAGCGATATCGGTTTTCTGCAAGCATTCAG
AGACGTGTAATGTGTGCCACCGAAGTCTTCTTGTGTTATGTCGCTTTGGG
GTTGCTGGTCTGTCTGCCCGGTCTGTCTGTCGGGCGCGTTGTCGGAAGAG
GAAGGAGTGGAGGGAGTTGGGCATCTTCCTCTCTGCACGGCTGCTGATCA
ATCGAGCGTGGCCCGTTGTTGGTTCTATTTATCAATTAGACAGACACAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5262975..5268373-

>mRNA_P-fluviatile_contig1.476.1 ID=mRNA_P-fluviatile_contig1.476.1|Name=mRNA_P-fluviatile_contig1.476.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2016bp|location=Sequence derived from alignment at P-fluviatile_contig1:5262975..5268373- (Porterinema fluviatile SAG_2381)
ATGTTGTCCGCTCGGCTTTCATGCGTTCCCATCCGCCAAGCTTCGGTGGG
GTTCAGAAGATGGCCACCCGGAAAACCTCAATCAGTCATCCCTCTCGCCC
GTACGGCATCCGCGTCAGTCACAACCTCTTCCTACATAACAGCAGCAGCA
AATGGACGTTCCATTGGAAGGAATTCAGTCGGATTCATAGGGAGGGGCAT
GAGCAATTGCGCACGTAGCACTTGGGCACGCTTGAGTGCTGTCTCCCGAG
CTCCCAACAAATCCACGGGACTGTCAGCTTTGGGCTCACGCACTCGGGGC
TTGTCGTCCTTCATCCCTCGAGGAGGGGGCTTGTCGGACTCCATGGTCGT
CAACGGGCTGGTCGGGATGTTGTCCGCTCGGCTTTCATGCGTTCCCATCC
GCCAAGCTTCGGTGGGGTTCAGAAGATGGCCACCCGGAAAACCTCAATCA
GTCATCCCTCTCGCCCGTACGGCATCCGCGTCAGTCACAACCTCTTCCTA
CATAACAGCAGCAGCAAATGGACGTTCCATTGGAAGGAATTCAGTCGGAT
TCATAGGGAGGGGCATGAGCAATTGCGCACGTAGCACTTGGGCACGCTTG
AGTGCTGTCTCCCGAGCTCCCAACAAATCCACGGGACTGTCAGCTTTGGG
CTCACGCACTCGGGGCTTGTCGTCCTTCATCCCTCGAGGAGGGGGCTTGT
CGGACTCCATGGTCGTCAACGGGCTGGTCGGGCTCAACTTAGCCGGAACG
GTAGCATTCTATCTCAATGAGACGCAGGGAATCGGCGGATCCTTTCTGTT
GCTCAACTTAGCCGGAACGGTAGCATTCTATCTCAATGAGACGCAGGGAA
TCGGCGGATCCTTTCTGTTGAGCAACTTCTTGGTGTCGACCTACACTACG
CTTTCGCAGGGAAAGCTGCACACCCTCATCACTTCCAACTTCAGCCACAG
AGCAACTTCTTGGTGTCGACCTACACTACGCTTTCGCAGGGAAAGCTGCA
CACCCTCATCACTTCCAACTTCAGCCACAGCAACTTGTGGAACGGAGCGA
TCTTCACCTACATGCTCTACACGCTGGGGCCGATGGCGATCCAGAGCCTC
GGCAGACGGCAGTTCTTGGCGCTGTACCTGCTGGGCGGGACTTTCTCGCA
GCCAACTTGTGGAACGGAGCGATCTTCACCTACATGCTCTACACGCTGGG
GCCGATGGCGATCCAGAGCCTCGGCAGACGGCAGTTCTTGGCGCTGTACC
TGCTGGGCGGGACTTTCTCGCAGCTGTGCCAGGTGGCGGGGCCAGGAGTC
GCGCGACGGCTGGGTCTCCCGACAGTCCTGCAGTGTGCCAGGTGGCGGGG
CCAGGAGTCGCGCGACGGCTGGGTCTCCCGACAGTCCTGCAGGTCGACCC
GTTTTTCATAAGCTCTGGGGGCTCCGGAGCTACGCTGGCTTTGCTGGCGT
GGTACTGCGCGAGCTTCCCCGGCAGGTCGACCCGTTTTTCATAAGCTCTG
GGGGCTCCGGAGCTACGCTGGCTTTGCTGGCGTGGTACTGCGCGAGCTTC
CCCGGCAGCAACATTATCCTTCTGGTGTTCCCTGTCCAGACCGGCGTCGC
CGGTGCGCTGTACCTTGCCGCCACCCTGTACCCCGTCGTGACCAACGGGG
CGGGAGCGATACCATTTCTTGGAGGACCGACTCAGGAGATCTGGCGAACG
CTGGGGGCGATCTCGGCCGGGGTGTTGGTGGCCCTTGCGTCTCGCGGTCG
GGGGGGCGGGCGGTACAAGTTTATCCAGCGGTATTGACAACATTATCCTT
CTGGTGTTCCCTGTCCAGACCGGCGTCGCCGGTGCGCTGTACCTTGCCGC
CACCCTGTACCCCGTCGTGACCAACGGGGCGGGAGCGATACCATTTCTTG
GAGGACCGACTCAGGAGATCTGGCGAACGCTGGGGGCGATCTCGGCCGGG
GTGTTGGTGGCCCTTGCGTCTCGCGGTCGGGGGGGCGGGCGGTACAAGTT
TATCCAGCGGTATTGA
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