mRNA_P-fluviatile_contig1.474.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.474.1
Unique NamemRNA_P-fluviatile_contig1.474.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig1.474.1 vs. uniprot
Match: D8LNG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG0_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 3.240e-24
Identity = 145/341 (42.52%), Postives = 176/341 (51.61%), Query Frame = 1
Query:   76 MDSNLEAEIDRLARSPSEAGVSSD---------PPTSVAVSSLTKPMILQPQNGRLAEAGGMRTSTAAARDYQQQQAPGQHPGRISRGSSLGSNNGXGNSMRSPQHQHRSGGMAAAAVLAGNHIGDVNQQMPPGANPRQRYHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERPRPRLAANGEKMAGPSRPXXXXXXXXXXXSASRPAYRPAGMGGXXXXXXXXXXXXXXXXG----------MXXXXXXXSGSVSYSAELPRGVVRK------KGPLSKEEEEWRKNEEALKKKERSVRDALRAKQRTLQQESLLLATVDRELAALAANHQQEVNDLRKT 1023
            MDS LE EI RL+R+P+  G SS          PP + A   L+ P I+QPQ+GRLA AGG    TA             HP R+ RGSS GSN+  GN++RSP   HRSG + + AVLAGN I D+  QMP G++                                   E+PR RL      +   +R         XXX  + P  RP+    XXXXXXXXXXXXXXXX           +        G  + +A               KG  SK+EE W+K+E ALKKKE+SVR+AL+ KQRTLQQESLLLATVDRELA LA +HQ EVNDLRKT
Sbjct:    1 MDSGLEEEIARLSRAPAGGGGSSGDGGRSEPIHPPGAPAA--LSTP-IVQPQSGRLA-AGGADGGTAV------------HPPRLRRGSSSGSNS--GNNLRSP---HRSG-LVSGAVLAGNSISDL--QMPAGSS--------------------------------GSPEQPR-RLGGGSGDVGAAAR-----ASSNXXXXXAPPQRRPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFVNGEKVAGFGGAATAAXXXXXXXXXXXGKGAKGVTSKQEEAWKKSEAALKKKEQSVRNALKEKQRTLQQESLLLATVDRELAQLALSHQTEVNDLRKT 279          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNG0_ECTSI3.240e-2442.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5243457..5251348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004000.1
Exons5
Model size2244
Cds size1194
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.4103408-UTR-P-fluviatile_contig1:5243456..52444311622815267.4103408-UTR-P-fluviatile_contig1:5243456..5244431Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5243457..5244431 -
1693561309.4528835-UTR-P-fluviatile_contig1:5243456..52444311693561309.4528835-UTR-P-fluviatile_contig1:5243456..5244431Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5243457..5244431 -
1622815267.4843788-UTR-P-fluviatile_contig1:5251273..52513481622815267.4843788-UTR-P-fluviatile_contig1:5251273..5251348Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5251274..5251348 -
1693561310.248331-UTR-P-fluviatile_contig1:5251273..52513481693561310.248331-UTR-P-fluviatile_contig1:5251273..5251348Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5251274..5251348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.4229321-CDS-P-fluviatile_contig1:5244431..52445961622815267.4229321-CDS-P-fluviatile_contig1:5244431..5244596Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5244432..5244596 -
1693561309.5676897-CDS-P-fluviatile_contig1:5244431..52445961693561309.5676897-CDS-P-fluviatile_contig1:5244431..5244596Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5244432..5244596 -
1622815267.4335308-CDS-P-fluviatile_contig1:5245630..52457121622815267.4335308-CDS-P-fluviatile_contig1:5245630..5245712Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5245631..5245712 -
1693561310.1883311-CDS-P-fluviatile_contig1:5245630..52457121693561310.1883311-CDS-P-fluviatile_contig1:5245630..5245712Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5245631..5245712 -
1622815267.4439673-CDS-P-fluviatile_contig1:5247373..52474591622815267.4439673-CDS-P-fluviatile_contig1:5247373..5247459Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5247374..5247459 -
1693561310.2038124-CDS-P-fluviatile_contig1:5247373..52474591693561310.2038124-CDS-P-fluviatile_contig1:5247373..5247459Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5247374..5247459 -
1622815267.4591124-CDS-P-fluviatile_contig1:5248356..52488981622815267.4591124-CDS-P-fluviatile_contig1:5248356..5248898Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5248357..5248898 -
1693561310.214173-CDS-P-fluviatile_contig1:5248356..52488981693561310.214173-CDS-P-fluviatile_contig1:5248356..5248898Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5248357..5248898 -
1622815267.4729476-CDS-P-fluviatile_contig1:5250954..52512731622815267.4729476-CDS-P-fluviatile_contig1:5250954..5251273Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5250955..5251273 -
1693561310.2349102-CDS-P-fluviatile_contig1:5250954..52512731693561310.2349102-CDS-P-fluviatile_contig1:5250954..5251273Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5250955..5251273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.474.1prot_P-fluviatile_contig1.474.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5244432..5251273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.474.1

>prot_P-fluviatile_contig1.474.1 ID=prot_P-fluviatile_contig1.474.1|Name=mRNA_P-fluviatile_contig1.474.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=398bp
MDSNLEAEIDRLARSPSEAGVSSDPPTSVAVSSLTKPMILQPQNGRLAEA
GGMRTSTAAARDYQQQQAPGQHPGRISRGSSLGSNNGGGNSMRSPQHQHR
SGGMAAAAVLAGNHIGDVNQQMPPGANPRQRYHGGPGGSDSGGSPGQQRQ
QQPSNGGGGGGGERPRPRLAANGEKMAGPSRPLALNGEKMAGPSASRPAY
RPAGMGGGGGGGMGMGGGGMGSGGMGGMGGMGSGSVSYSAELPRGVVRKK
GPLSKEEEEWRKNEEALKKKERSVRDALRAKQRTLQQESLLLATVDRELA
ALAANHQQEVNDLRKTLEVVDRELAFLDRDAQKKLEAFEKARTALSAKVD
EKHKITSRLTELIMASEKQKDAKLNEIMQKMAAAEINGPAGGGGGTY*
back to top

mRNA from alignment at P-fluviatile_contig1:5243457..5251348-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.474.1 ID=mRNA_P-fluviatile_contig1.474.1|Name=mRNA_P-fluviatile_contig1.474.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=7892bp|location=Sequence derived from alignment at P-fluviatile_contig1:5243457..5251348- (Porterinema fluviatile SAG_2381)
CCGGTGTGCGCTCTTCTTGTGCTTTGGTGAAGGAGAGACACCAAAGGCGG CGGCGCGCGGACAACAAGCTTGGACATGGACTCCAACTTGGAAGCAGAGA TCGACAGGCTGGCGCGATCACCGTCCGAAGCCGGAGTTTCCTCTGACCCT CCCACTTCCGTGGCGGTCAGCTCTCTCACGAAGCCGATGATACTCCAGCC GCAGAACGGGCGCCTGGCGGAGGCGGGGGGCATGAGAACCTCCACGGCGG CGGCGCGCGACTACCAGCAGCAGCAGGCTCCGGGCCAACATCCCGGGCGC ATCTCGAGGGGATCCTCACTGGGGTCGAACAACGGAGGAGGCAACAGCAT GAGGTCCCCACAGCACCAGCACCGAAGCGGGGGAATGGCGGCCGGTGAGA AGCGATTTTCTGGGGCGGAAAAGAGTGGCGATTCGCGTAGCGTAGAGACA GAGAAGGTAGTCGCATGTGTGTGTTCTGCGTGTCGGCGGGAAGTGGGTGG CTGGATCACTGCTTGGAGCGAAAATGAGAACGTTTTTAACATGTGCCAGT GACATTACCGAGGAACAAACTTGCTCGTTGGGATTCACCCCTCCCAAACA CACGCAATGCGCATCCGGTAACAATCCGATAGTGTTAAGTGAAGCTTGTC GGCCACGCGGAGAAAGCGTCTTTGCACATCTGCGTCTCTCTCAAAGCCCT TTCTCTTCTTTCCCGTGCTCCGTTCACCCCTCGTCCTTCGGCACAAATAC CCCGCCACATATACTACTCTCATCATATACTACTCTCATCATCTCGGCTT CGCCATTAGGGGAGAGAGGATAGGCTTTTTGAGGCGAGGGGCGAGTAGGG CTTGAATTGGAATTATGGGAGGATCGAGGGGCGCAAGTTTGGTTGTGGTC GTGAAGTCGTTCATCATCAATGGATGATCGGCAGATGCACATTCGATCCT TCCCCATCTCTCTGACCGAGGATGGAAGATGCACATACACTGTGGAGTTC CCCCGGTCCATGCACGCAAAAGATGTTGACGCCTCAGTCTCGCCCCTACC AATCTGATGAAACGAGCGCTGACTCCCTCAGATGCTCGTCTCGTTCGTCC TTTTCTTTTGCCTCAAAGCCGGACAGAAATGACGAACTTGACGTGCACTT GCGCGCCATTCTGTGCCAGCCGCCCGGAGACATACTTCGTGGTCTCGACA ACAACCATGCCGATTCCCGGACATGACAAGCGCGATAGATCTCTAGTTCC AAATACTCCGCATGCACATATGTACTCGGACAGCGTTTGAAGATGAGTTT TTCGTGTCTGGAAGCTCCACGCGTTCGTGTCACTGTGGGAAGCCCTCAAT AGCGCCGTTTGATTGGTGCCGCCGCAAGTCATCGTGCCGGTCAAATATCC GGGCACGAGTGTCCACACCTGTTTTAGTGGATATTGCCGGTGGCCGGAAT AGTCTCGTGCCGTCCAAATATCTGGGCACACATTGGCACTAATAAGGGCG CCCTGTTTTAGTGAATATTGCCGGTCGCCGGAATAGTCTCGTGCCGTCCA AATATCTGGGCACACATTGGCACTAATAAGGGCGCCCGCCCCCCACTGTA CCGACATAACCACATATTGGGTACGGAAAAGGAGCCTCGATGAAATTGGC CCCTGCTTTGAAGCTCCCTCCAAGACGTGCGGCCGTGGTGTCCCACATGT TTGGTTTGTCCCTCCCGGACAAAAGGCTTCGTTATCCGCCGGTCAGAAAA TCGCGATGGAACCACCACGACAGCCATTTCTCCACTTTTCCCAGCCTCAA GCCCTCTGTGGACCTACACATGTTGTTCAGCGTGTAAAAACTGGATGAGA AGAGCAATTGTCGGCGCTGGGATACTCGGTCGCCAGTGCCGCTGCTGTGC AAGGCCGTCGCGTCAGCTTTGTCTGTAAGACTTTGCCTTTGCCTTCAGGA GCTAACTACCTCACAGACTGGAGTCTCCGCTATGAGCTCGCCCGGTGGGA AATCTTAAGAAATTGAAACGAGCGGATTCAAGAGGAACAAAGGCGATCCT CGCCTCTTTTTACGGTGGTCCATGTGTACCACTATTCCGTGGTAAGGAAA GCGGCGAGAGAGTGCAGCCGCGGCACTTTGTTTCACTCTTCGAACGAGGG TTCGTCTTCCTGCTGATGTTTTTTTCGGATATTAAATAGAAGGCGCCGCT CGTGCCTTCACACCGAACGCATCACTACCCCAACGCCGCCCCCTCAGTAG TCGTCCAACATGTACCCCCGCGCTTCATTCAGTCACTTGAAGCGTAATCG GATCGCCTCGTTCCGCTTGGCGAACGCTCGTTCTCTCACGGCTATTCCGT GTTGGTGATGCCCCCCTCTTGCCCCTTTTTCCTTGCTCTGCACGCACGCA CGCTCGGCGGGTGTGGCATAAACACTACTCGAAAAACAACATTAAAAAAG CGGCCGTCCTGGCGGGCAACCACATCGGCGACGTTAACCAGCAGATGCCG CCGGGGGCCAACCCGCGTCAGCGTTACCACGGCGGTCCAGGAGGCTCGGA CAGTGGTGGTTCCCCGGGGCAGCAGCGTCAGCAGCAGCCATCGAACGGCG GCGGCGGCGGCGGCGGCGAACGCCCCCGGCCGAGACTAGCCGCGAACGGC GAGAAGATGGCCGGCCCGTCGCGACCGCTGGCGCTCAATGGCGAGAAGAT GGCCGGCCCCTCGGCGTCGCGGCCCGCCTACCGGCCCGCCGGTATGGGCG GCGGCGGCGGTGGCGGCATGGGCATGGGCGGGGGCGGCATGGGCAGTGGT GGCATGGGCGGCATGGGCGGCATGGGCAGCGGCAGCGTGTCGTACAGTGC GGAGCTACCACGAGGCGTGGTGCGGAAGAAGGGGCCGCTGAGCAAGGAGG AGGAGGAGTGGAGGAAGAATGAGGAGGCTCTGAAGAAGAAGGAGAGGTCG GTGAGGGACGCGCTTCGGGCGAAGCAGCGGACTCTCCAGCAGGTAAGGGA GAGATAAGGTGCTGCTGGCTCCGCGGAGTAGTGGGGTTTCGCACCGTGGT GGTGGTAGCAGAGGCAGCAGCAGCGGCAGCAGCAGCAGCGGCAGCAGCAG CAGAAAGGAGAGGGTAGTGGAAGGAGGAAACAAGAAAGCAGCGAGGCAGT AGTGGGTGCTTCACATCAGCTTGCGTACGCCTTGTGCTCGCACGTGTTGG CCGTGGACCGTACGCTCAGGCGTGTGGGGCTTTCGCGTCGTCGATCCACG TGCTAGTATCTGTGGAGGGGGAGCAGGGGCTTTCGCTTTTGTGTGTGGTG GTTGGTTGCGTCCATCGGTTGTCCGTCCGCCCCCCTTCCCGCGCCCGGGA TTCCAGATCTTTTTCTTTGGTAGCCCATCTATTTTCCGCCTCACACCTCG GCCTGTTTTCGCCCGGTCTCGGGCTTCTTCCCTTGCTCCGCGAGTGTTGG GCCCGGCCCCGCGTTACGGATCGCCCCCAACTCGCCCATGTGTACCAATT TTTGGCTCGCTGGCGTCCATAGAGCGTTGTTCTCCTGGGTACACATGCTT TATTTTTTTCTTTCCTTTTTTTCTTCCAAGTTTCTCGGTAGGTTTGCGTT GCGGAGGTTGGGTTTCGCGTTGCCTGGATGCGCGGGTCTCACACAATGTC CGCGGCAATGCTTTCGGGTACGGCTTGACCTACTCGCTTCGCCACACCGG CAGCCGAACAGGCTTGTGCTGCTGCTGCCGGTGTCCGACCCCCACTTGCT TGAGCCTTTCGACGGCGTTCTGTCGTTCCCCCCCCCCCTTTTCTTTTTGT TGCTGCCTTCCGACCATGCCTTGTGCCGTTTTCCTCCGCTGCCCTCGATT GCAATGCAACCGACCCCCCCAAAATAAAAAAATAAAAAGGAATCGTTGCT GCTCGCCACGGTGGATAGGGAACTGGCAGCACTCGCAGCTAACCACCAGC AGGAGGTCAACGATCTCAGAAAAACGTGAGCATGACAGGGGGCAATGACG CTAGGGGATGCAAGGAGAGGGTGGGGGTGCTGAAGGAAGCACTGAGAAGT GGCTGGGGCGGGAATGAAAGGGGAAGCGGGAGCCAAATAGACTCATTGCC GACTGTGGGTGTTAGGCTTGAACGGGTATCGCTGAAGGCGATATAGAAGA ACAGGGATATCACTGACGGACAGGGTATGAACGACGGCCCCCCGGCGGCG ACAACACGGCAAGTTATGCGCAAAAGGCATAGGACAAACGATAACGATTG TCGGCATAATTTTTATTGTGGTTCGTAAGGGGTCCCTTCGGCCGAAGATT AAAAGGGAATGGCAGACGCCGAGTTCGGCAGCACTTCGCTTGTGAATGTC TGTCGACCACAGGCGGCGAAAAGTTCGTGGCCGAGCCTCGAGGGAGCGCC GTATATGCTCGTGCACAGTGCAGGTATACGACGACTGTCGATCCGGCGGG GTCCCACAGCTGTGGAATTACCACCCTCGTGCACTTCCCGCTGTCGGTGA TGTTGCTCTTGGTTGCCGCAGCTTCCCTACATGTATCGTTTTATTCCCAA CAGATGAAGAGAAAAAAAGTGCTTGATACATACCTCAGCATACTCTATGC TTCGCGGAATGCCAATCCTTGTCGACTTCGACATGTATCGACAGCTCATG ACTTCTCACCATCCACGCCTGCCCTTTTGTCGTACAAGAGGGAAAGCCTT TGCTATGAACGCTTTTTTCCGGCGTTCGACTTGCCTCCCGGTTGATTACG TTGGTATCCTATACACGCCATCTGGAAGCCATGTGGAAGCTTCAAATATC CCGGTGCAGCCAAACGAATTGACTCGTGTTCTCAAGTCCAACCTTGCGAT GGAAAGCCATTGCTTCCCGTGTACAAGACTGCTTCGTGAATCGACTGTCG GCGAGCAGAAGGGAAGTTTGCACACTTTTGGCGATGAAAACCAAGGGGAG CACCGCAAGTGGAGGTTTGGGTGTTGTCTTGACATTAAAACCCCCTTTCC GCTCCCCTCCTGGCACCTCCAAGTGTCCGTACCCTTTCCTGTCGGATAAC GATTCCGTGGTCACAGGGGATAAAAAAGATGGTGATACCCCTTACTATTG GGGTCCCGCCCTACAAGAAAGATCGGTCCAGATACCTAGCACCCTACGAA GCGAAATACGGAGTACATGACAAGATGCAAAGGCAAAGCACCCCATTATC CTCCTCTCGATCATAACGTGTGGGCGCAGCAGCGTCTATCCAACCTGCAT GATGTTTTTACTCCGTTCCAATGCAAAATAAAAGGAGGGGAGAACGGACA ACTGAAAGAGTTGTGCATGTGATCGTTCTCCTGTGTGATCGTCGCTTTTG CCCTTGCGCAATTACACCGAAAGGTGCTGGCCGGTGTCGAGAGCAGTCGT GACGAGCACACATATGCGGCGCAGATAATTGTTTCCCGTCGATTGGGTTT CACTTTCTTGATTTGTGCTGAGTTTGTCATGAGGCAGTGAGCATTTTGCT GCGTCCAAGCCCGTTATGCGTTGTCATCTTCCTGCTCCATGCCCTCACCT CTTCATTCCGTTGGTTGTCTCCGTGGGGCGTGGGTGTGTTGGGGGGGCGA TTGTCTCGGGCGAACGGATCGGCCGGTCGGGCGCAGACTGGAGGTGGTCG ATAGGGAGCTGGCTTTCTTGGACCGCGACGCCCAGAAGAAGCTCGAGGCG TTCGAGAAGGCTCGCACGGTGAGTGGGGTATAATGTTTTTGATCTTGCGA ACCCCGCATTTACACTACGGGAGCCGGCCACCTCTCTACGCGCACTAGTT TGTCGGGGGTGCGGGGGGTATGGCTCCTGACACCCGACAAAGCGCATCCC GCTTGTCAACAATATGGTGGGTTGCCCGTTTCAAGTGGTCTGTGTTGTCA CGGTATCATGAACTCCTCGTCACTAACCCGTGAGGGGCGAGGGTTGCCTA CGTCCGTGTTTATATCACTCCGTGTTGCAGTTGTTGCTCGTTGCTTTGAG CAATCAAAAGAGCTTTGCGCCGAAAGGCGAAGAGGACGCTCTCACTATCC GAAAGCTAGCCATCTTTGTCGTCGTTGTCGCTTTTTCTGCAGCACCCTCC CTCCTTTCCAATACAAGACCCTGCTCTGTGTGGGTGACAATATGCACAAA AAAAAATCGCTCTCTCTCTCTCCCTCTCCCCCTATTTCTCCCTATCGTTG GTGCTACCCACTTGTTACGCCACAGCCTTCGAGACCGGTTGCATGCACTC GCGAAAGTTGCTTTCCTCGTCTTCCCGTTTCTGTCGGTGACATTGGTGTA CCCTGCGTTTGCCCGGTGCACGGGGCTTGGGATCGAGTCAGTCGCTGGGC TCTATCAGCGCCTTCCGTACCGCATAACATTTCCCATTCGTTTTGCATGA AGCGTTTTCTGCTTCGAAGCCGGAGTAGAAAGCGATAGTTGGTGTGTTTG CAGGGAAGAGATGACAGGGCTCATGGCTGCACAGCACCTTCCACCCGTTT GACCCCAGTTTATACGCCCAGATATTATAGGGAGGTGTGAACTGCCGGCA AAAGACATCTTGCGGCTTCGCTCATATAATCTCTTGTTCCCGCCCGCTTC TCGGTGCCACGTGGGAAACCACAACTTTCCTCTTCGCTTCCATATACCGT ACCTTTCCCTTATCCCCCAATCCCCCTCTTTCACTATCCCTCCGCCGCTG CACGTCCCCTCGCGTGTGTCGGCGTTGATAAAACCGAACCGAATCGAGCC AGGCCCTTTCGGCAAAGGTGGACGAAAAGCATAAGATCACTTCCCGCCTC ACGGAGCTCATCATGGCCAGCGAGAAGCAGAAGGACGCTAAGCTCAATGA GATCATGCAGAAGATGGCGGCGGCCGAAATCAACGGTCCCGCTGGCGGCG GCGGCGGGACCTACTAAAGCTTGTCGCGCACGAGTCGCCACTTCGGATCT CCGCCCGGGGGGGTCTGAAGCTATTCCCGTCAACATCCACACACTCGCCG ATTCTAGGCAAGCCCATGATATCGACACGAGGCGTTGGCGCGCGGATCAG GGACTCAAGTGTTTTTTCCGAATTTATTGACCACCCGTGGCGTTCCGAGT TCTTGTTGCCCCTTTTCTGTGCTTCTCGTGGTGTGAGTTTGAATCGTAGG CAGGGCGGTCGATGTATTTGTTTGGCTGGCCTGCCGGTGGGCAAGATGAA TGAATGGATGGCGCTTTGTTTTCTCGCCTCATACATGCGAAGTATGTATT CGTTCGTGATTTTATTTGTTCGCTCGTTCTAAGCAAGTTAGCTTTTTCTT GCAGGCTCCGCTCGCTCCACCGGAAAGTGCTGAGATGCATGCTGACCGGG CGACGGTGGATTGGTGCTGATTAGTGACGCTACGTACATGCACGCTTGTT TTTTTGATGCTCGCAGTTGCAGATGAGAGGGCCCACTTACCAGATTAGAT CACTCCCGTTTTCCTGTTAGTATTTTTGGTGCCGCTGTTTGCTGTGCATT GTTGACACTGGTTTGCGGTGTATCGCTGTCTGCGTGCCCCCCCTGGTGTA GGTGGGCAGGCAATGTGTTGCCACCGTTCACACCCGAAGCGCAAGCAATC GATTTTGTCTAGTTCATTTGATGCTGCCGTACCCGACTGCTCCGTCTCCC TGTTGCGGATCCGGTTGATCAAGCGGTCTAGCCGCAGTCTCCGTCGCCGC CGCCCATCAATCGCGTAACCTCGCGCATCGTGTGACTGGATGGTCATGCT CAACGCCACCGTCTCGCCCTGCCGGTGATTTGACCATCAATACCAACTCG GGAGGGAGTAGGTGCTGCAACACACGCATGCACACACACGTGGTCGGTGG TCTCGTGCCCATGGAAACGAAAAAAAACTGACACCAGCGAGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:5243457..5251348-

>mRNA_P-fluviatile_contig1.474.1 ID=mRNA_P-fluviatile_contig1.474.1|Name=mRNA_P-fluviatile_contig1.474.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2388bp|location=Sequence derived from alignment at P-fluviatile_contig1:5243457..5251348- (Porterinema fluviatile SAG_2381)
ATGGACTCCAACTTGGAAGCAGAGATCGACAGGCTGGCGCGATCACCGTC
CGAAGCCGGAGTTTCCTCTGACCCTCCCACTTCCGTGGCGGTCAGCTCTC
TCACGAAGCCGATGATACTCCAGCCGCAGAACGGGCGCCTGGCGGAGGCG
GGGGGCATGAGAACCTCCACGGCGGCGGCGCGCGACTACCAGCAGCAGCA
GGCTCCGGGCCAACATCCCGGGCGCATCTCGAGGGGATCCTCACTGGGGT
CGAACAACGGAGGAGGCAACAGCATGAGGTCCCCACAGCACCAGCACCGA
AGCGGGGGAATGGCGGCCGATGGACTCCAACTTGGAAGCAGAGATCGACA
GGCTGGCGCGATCACCGTCCGAAGCCGGAGTTTCCTCTGACCCTCCCACT
TCCGTGGCGGTCAGCTCTCTCACGAAGCCGATGATACTCCAGCCGCAGAA
CGGGCGCCTGGCGGAGGCGGGGGGCATGAGAACCTCCACGGCGGCGGCGC
GCGACTACCAGCAGCAGCAGGCTCCGGGCCAACATCCCGGGCGCATCTCG
AGGGGATCCTCACTGGGGTCGAACAACGGAGGAGGCAACAGCATGAGGTC
CCCACAGCACCAGCACCGAAGCGGGGGAATGGCGGCCGCGGCCGTCCTGG
CGGGCAACCACATCGGCGACGTTAACCAGCAGATGCCGCCGGGGGCCAAC
CCGCGTCAGCGTTACCACGGCGGTCCAGGAGGCTCGGACAGTGGTGGTTC
CCCGGGGCAGCAGCGTCAGCAGCAGCCATCGAACGGCGGCGGCGGCGGCG
GCGGCGAACGCCCCCGGCCGAGACTAGCCGCGAACGGCGAGAAGATGGCC
GGCCCGTCGCGACCGCTGGCGCTCAATGGCGAGAAGATGGCCGGCCCCTC
GGCGTCGCGGCCCGCCTACCGGCCCGCCGGTATGGGCGGCGGCGGCGGTG
GCGGCATGGGCATGGGCGGGGGCGGCATGGGCAGTGGTGGCATGGGCGGC
ATGGGCGGCATGGGCAGCGGCAGCGTGTCGTACAGTGCGGAGCTACCACG
AGGCGTGGTGCGGAAGAAGGGGCCGCTGAGCAAGGAGGAGGAGGAGTGGA
GGAAGAATGAGGAGGCTCTGAAGAAGAAGGAGAGGTCGGTGAGGGACGCG
CTTCGGGCGAAGCAGCGGACTCTCCAGCAGCGGCCGTCCTGGCGGGCAAC
CACATCGGCGACGTTAACCAGCAGATGCCGCCGGGGGCCAACCCGCGTCA
GCGTTACCACGGCGGTCCAGGAGGCTCGGACAGTGGTGGTTCCCCGGGGC
AGCAGCGTCAGCAGCAGCCATCGAACGGCGGCGGCGGCGGCGGCGGCGAA
CGCCCCCGGCCGAGACTAGCCGCGAACGGCGAGAAGATGGCCGGCCCGTC
GCGACCGCTGGCGCTCAATGGCGAGAAGATGGCCGGCCCCTCGGCGTCGC
GGCCCGCCTACCGGCCCGCCGGTATGGGCGGCGGCGGCGGTGGCGGCATG
GGCATGGGCGGGGGCGGCATGGGCAGTGGTGGCATGGGCGGCATGGGCGG
CATGGGCAGCGGCAGCGTGTCGTACAGTGCGGAGCTACCACGAGGCGTGG
TGCGGAAGAAGGGGCCGCTGAGCAAGGAGGAGGAGGAGTGGAGGAAGAAT
GAGGAGGCTCTGAAGAAGAAGGAGAGGTCGGTGAGGGACGCGCTTCGGGC
GAAGCAGCGGACTCTCCAGCAGGAATCGTTGCTGCTCGCCACGGTGGATA
GGGAACTGGCAGCACTCGCAGCTAACCACCAGCAGGAGGTCAACGATCTC
AGAAAAACGAATCGTTGCTGCTCGCCACGGTGGATAGGGAACTGGCAGCA
CTCGCAGCTAACCACCAGCAGGAGGTCAACGATCTCAGAAAAACACTGGA
GGTGGTCGATAGGGAGCTGGCTTTCTTGGACCGCGACGCCCAGAAGAAGC
TCGAGGCGTTCGAGAAGGCTCGCACGACTGGAGGTGGTCGATAGGGAGCT
GGCTTTCTTGGACCGCGACGCCCAGAAGAAGCTCGAGGCGTTCGAGAAGG
CTCGCACGGCCCTTTCGGCAAAGGTGGACGAAAAGCATAAGATCACTTCC
CGCCTCACGGAGCTCATCATGGCCAGCGAGAAGCAGAAGGACGCTAAGCT
CAATGAGATCATGCAGAAGATGGCGGCGGCCGAAATCAACGGTCCCGCTG
GCGGCGGCGGCGGGACCTACTAAGCCCTTTCGGCAAAGGTGGACGAAAAG
CATAAGATCACTTCCCGCCTCACGGAGCTCATCATGGCCAGCGAGAAGCA
GAAGGACGCTAAGCTCAATGAGATCATGCAGAAGATGGCGGCGGCCGAAA
TCAACGGTCCCGCTGGCGGCGGCGGCGGGACCTACTAA
back to top