mRNA_P-fluviatile_contig1.473.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.473.1
Unique NamemRNA_P-fluviatile_contig1.473.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.473.1 vs. uniprot
Match: D8LNG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG1_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 1.090e-93
Identity = 187/352 (53.12%), Postives = 213/352 (60.51%), Query Frame = 1 
Query:    1 MSDAALKVDPDYYSNTRLLGNT------------LSGGVDGXXXXXXXXXXXXXADGSSVRGLPDLPDYLVRQHSLLGFYLSLNPGDEADAERHWGFPQPQRAAIAGVTVVVPLVLALFLDGSWLWKACVISVVAVGARLVVSFCLATFSEVEVTVQEHTLSVWPHFVLGTLAVTGLIWFVTAAASGTGWSTMWLCFTSLLFLACSEAALRGSCEWHFRWWAPTARFAFLKPWGDSLAAGGAGGRAGLEGGGLGSGGYAPPRPSA-APPAVAPRTEYDSIGMGARGAVXXXXXXXXXXXXXXXXXXXXXDEDGGEGGYNGA--AAPVVAPRDENTGLLEGMGDGSQDLEDIF 1011
            MSDAA+KVDPDYY+ + L  +T                   XXXXXXXXXXXXX             DYLVRQHSLLG YLSLNPGDEADAERHWGFPQ QRAA+ G TVVVPL+LA+FL GSWLWKA VI+V  VGARLV+SF LATF ++EV  Q H L+VWPHF +GTLAV  LIWFV AAASGTGWST+WL FTSLL LAC+EA LRG   WHF+WW P  RF+FLKPWGD+             G G G  G+  P+PS+ APP              A                          +  G GG NG   AA VVA ++E++GLLE       DLEDIF
Sbjct:    1 MSDAAMKVDPDYYNRSLLETDTRMDQSRRAAATGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYLVRQHSLLGLYLSLNPGDEADAERHWGFPQHQRAALVGATVVVPLLLAVFLTGSWLWKASVIAVATVGARLVLSFALATFPDIEVPFQGHVLAVWPHFTIGTLAVMALIWFVCAAASGTGWSTLWLAFTSLLLLACAEAGLRGGM-WHFQWWEPATRFSFLKPWGDAYGPV-------ATGPGRGGAGFGTPQPSSYAPPXXXXXXXXXXXXRQAEQPYRSPSGSGGSEGVAVGSVGGDGGDVVGSGGVNGGSPAAAVVAQKEESSGLLEENSKEMGDLEDIF 344
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNG1_ECTSI1.090e-9353.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5238984..5242206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_003990.1
Exons6
Model size1026
Cds size1026
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.473.1prot_P-fluviatile_contig1.473.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5238984..5242206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.7425609-CDS-P-fluviatile_contig1:5238983..52392121622815340.7425609-CDS-P-fluviatile_contig1:5238983..5239212Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5238984..5239212 +
1693561553.7545369-CDS-P-fluviatile_contig1:5238983..52392121693561553.7545369-CDS-P-fluviatile_contig1:5238983..5239212Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5238984..5239212 +
1622815340.7539396-CDS-P-fluviatile_contig1:5239951..52400501622815340.7539396-CDS-P-fluviatile_contig1:5239951..5240050Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5239952..5240050 +
1693561553.7674146-CDS-P-fluviatile_contig1:5239951..52400501693561553.7674146-CDS-P-fluviatile_contig1:5239951..5240050Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5239952..5240050 +
1622815340.7649803-CDS-P-fluviatile_contig1:5240409..52404891622815340.7649803-CDS-P-fluviatile_contig1:5240409..5240489Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5240410..5240489 +
1693561553.7767794-CDS-P-fluviatile_contig1:5240409..52404891693561553.7767794-CDS-P-fluviatile_contig1:5240409..5240489Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5240410..5240489 +
1622815340.7739787-CDS-P-fluviatile_contig1:5241286..52414861622815340.7739787-CDS-P-fluviatile_contig1:5241286..5241486Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5241287..5241486 +
1693561553.7860901-CDS-P-fluviatile_contig1:5241286..52414861693561553.7860901-CDS-P-fluviatile_contig1:5241286..5241486Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5241287..5241486 +
1622815340.782829-CDS-P-fluviatile_contig1:5241734..52420391622815340.782829-CDS-P-fluviatile_contig1:5241734..5242039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5241735..5242039 +
1693561553.796233-CDS-P-fluviatile_contig1:5241734..52420391693561553.796233-CDS-P-fluviatile_contig1:5241734..5242039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5241735..5242039 +
1622815340.796947-CDS-P-fluviatile_contig1:5242093..52422061622815340.796947-CDS-P-fluviatile_contig1:5242093..5242206Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5242094..5242206 +
1693561553.8039765-CDS-P-fluviatile_contig1:5242093..52422061693561553.8039765-CDS-P-fluviatile_contig1:5242093..5242206Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5242094..5242206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.473.1

>prot_P-fluviatile_contig1.473.1 ID=prot_P-fluviatile_contig1.473.1|Name=mRNA_P-fluviatile_contig1.473.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=342bp
MSDAALKVDPDYYSNTRLLGNTLSGGVDGGGGGGGPSFGGGGADGSSVRG
LPDLPDYLVRQHSLLGFYLSLNPGDEADAERHWGFPQPQRAAIAGVTVVV
PLVLALFLDGSWLWKACVISVVAVGARLVVSFCLATFSEVEVTVQEHTLS
VWPHFVLGTLAVTGLIWFVTAAASGTGWSTMWLCFTSLLFLACSEAALRG
SCEWHFRWWAPTARFAFLKPWGDSLAAGGAGGRAGLEGGGLGSGGYAPPR
PSAAPPAVAPRTEYDSIGMGARGAVGVGGSAGIGGGSLGGVGGGRLDEDG
GEGGYNGAAAPVVAPRDENTGLLEGMGDGSQDLEDIFKPES*
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mRNA from alignment at P-fluviatile_contig1:5238984..5242206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.473.1 ID=mRNA_P-fluviatile_contig1.473.1|Name=mRNA_P-fluviatile_contig1.473.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3223bp|location=Sequence derived from alignment at P-fluviatile_contig1:5238984..5242206+ (Porterinema fluviatile SAG_2381)
ATGTCAGATGCAGCTTTGAAAGTAGATCCAGACTACTACAGCAATACACG
ATTGCTGGGGAATACCCTAAGCGGAGGAGTAGACGGCGGCGGCGGAGGCG
GCGGGCCAAGCTTCGGCGGCGGCGGGGCCGATGGCAGTAGCGTTAGAGGG
TTGCCGGACCTTCCTGACTACCTGGTGCGGCAGCACTCGTTGCTCGGCTT
TTATCTGTCGCTCAATCCTGGGGATGAAGGTTTGTACGCACATGAAACTG
GGACAAAATGATGAGACGATGCGAGGACCTCGTCGAGATTGTCCGCAATA
ATGGAAACGGAAGTAAGATTATGGCCTCGAATGGAAACACTGCTTCACGA
TGCGGATGCGTGTACTTGAATGTCATTCCCACTCCCCTAATACTGCAAAG
CTTTGCGCTTCGATAACAGACGGGAGCGTAGTTTTAGGGAGCATGTTCTT
TCCTGGCTTCATGATCGTTAAACTCCGTATGGGTCGGGGGGTCTGGGGGC
AGGGCTAGAGGAGAGCGTGTGTGTGCGGTTGAGGCGTTCTCTCCCGTATC
ATGTCGAGGGAGATTTGATCCAGGCAGAAGTTTACGTGGAAAGCACTACG
AAGTATTCAACGACTTTTCCTCACGCCCTTAGAACTGTTGGTTTGAAGCA
TTTCTGTCGCTCCCCCGACCCGCAAACATCAAGTGTGCGACACTGTACCA
CAACAAATGCATGCGGAGCAGCGTGAGTGATCCTACGTCTTCGCATTGAG
TGAGGGCAGTTGGGGGCAGCAAGCCGCATGCAATTTGTTCTGTACTTCGC
TCGTTCTCGCCATCGGCTTCCCCCTCATCCCCCTTGCGCGAACTCGTCAT
ACTTCCAGAACAACGTTCCGCAACGCTTCGCTAGTATGCTAACCATCCCA
CCGGTCTTTATCCTCGCCGTCACACCACACTCCCCCGATTACTTCGTCGT
TGCCGTTTGGTTACCCAGCCGACGCAGAACGGCACTGGGGCTTTCCTCAG
CCACAGCGGGCGGCGATCGCGGGCGTGACCGTGGTCGTGCCGCTCGTCCT
CGCTCTATTCCTCGACGGTGGGCCAATTCCCGTTTTGTTGAAACTTCCCC
GTTGTGTGTGTCGCAGGATCTCACCGCATTTCCCCCCCACCGATTTGCAC
TGCTTTTTTGGCATATTAGCACCTCTGATTTTTTTTACATTCAAGTATTT
TCTGGCCCCTGCCCGAGGAGAATATTTCAAATGCCTTACGGTGACATCCA
CCACTTCGCAGTGTACCACTGTGCCAAATCCTCCATTTTGCTGCCTTGGT
GTGCGGCGAGTAAGTGTGAGAGTGGATCCCCTCGGGCGCTGGCGGCGCAT
GCCGAGTCATGAGTGACCTCCGGGCACTTAACAACAGCCGGCGCGCGCGC
TATTTTTTCTGTTATCGTTTTGGCAGGATCTTGGCTGTGGAAAGCTTGCG
TCATCTCGGTAGTCGCCGTGGGAGCCAGACTGGTCGTGAGCTTCTGCTTA
GCCACGGTGAGAGGACCGCGCGTTGGATGGGGTGTGTGTGGTGTGGGGGT
GGGCGTCGCTCAATTTCAGCAACGAAATCGGGGACGGGAGTGAGGGGTGA
CGGATGTCGGGAGAAATGGACGGCGGACTAGATACCGCTTGTCGACGTTT
TTTTGTGCGATGGCCATCGATGACGCTTCTTTACACAGCTTGAGCTGGGT
CACGCGGATGCGCCTTTTCAACTTCTCTGTAGTGTTTTGGCCTCAGGGAC
AGCAGCGATGCCAAGTCTTCACTTGCAGTCCTTTTCCGGACGGAAGATTG
CGCTTTGCTTGCGCTCAACTGAAAATCCTGATGAAAGACGTTTGTTGTAC
AAGTATGAGGAAATCTGGCGCTCGTAATTGCCACGGAACGACCCTGTCAG
CGATCAATGTACGGTTGTCCGGGTTTAGGGGATCGATTGGAGTGGCCTTT
CGCGGGTTGTCGCGCACGGGCAGCCACACGCCGTTCGTCCTCATCTTCCT
ACCTACCCACCTTCCTTCCTCTCCACCAAACACCACACGCTCACGACGAT
GACTTGCACGCCCCATGCCACGATTGCTTGCACGTCCCACACCGCGTAGG
CTGCCCTTTCCTATCCTGCGGTAAGGATAGTGCAGAGCCGCGTGCGCGAT
TGCTGTCTGGCCTTACCCCGTTACTTTCAAGAAGCCAACATCTTCCGCCC
ACAAAAATCATGACGTGGAATGAGCGCTAGCATTCATCCGCCGGTTCCCC
CCCCTCCCTCCAACGGACTCGCTGCTGCTGCCCACGCCGCGCCACGCTGT
CAGTTCTCTGAAGTCGAAGTAACCGTCCAGGAGCACACCCTCTCGGTGTG
GCCGCACTTCGTTTTGGGCACCCTGGCCGTCACGGGTCTGATCTGGTTCG
TGACTGCGGCGGCGTCGGGCACGGGATGGAGCACAATGTGGCTCTGCTTC
ACGTCTCTGCTGTTCCTCGCCTGCTCGGAGGCTGCCCTCCGGGGGTCATG
TGAGTCTGTGCTTTGCCCTGTGTTTTGTTTTGTTTTTTCAACTCGTTTGA
TCTCGATGGCCGTGTCGGATGATTCCGCTCGACGCACGTACCGAAGTCGG
AGCTTAAAACAGTGGGATTCCGCGACTTATGTAGGTGTGGATGGACCAAG
ACGAACGATCTCGGCGATCACTACGACGAGGTTTGCTTGGGTGCCCTGAC
ACCCGTTTTCATTTCCACTTTCTTACCGTTTCACCCTTGTTTTTTGTGTA
GGTGGCATTTCCGGTGGTGGGCACCGACCGCGCGTTTCGCCTTCCTCAAG
CCGTGGGGTGACAGCCTCGCGGCCGGCGGGGCGGGTGGCCGGGCCGGGCT
CGAGGGAGGAGGACTCGGTAGCGGGGGATACGCGCCACCTCGACCATCAG
CGGCGCCGCCAGCGGTGGCACCTCGAACAGAATATGACAGCATCGGCATG
GGCGCAAGGGGCGCTGTCGGTGTCGGCGGCAGTGCCGGCATCGGTGGCGG
AAGCCTTGGTGGAGTTGGAGGTGGAAGGCTGGATGAAGATGGAGGCGAAG
GTGGCTGTGGACACGACGGGGTGCAGCGGAGGGACATAAACGTGGGAGGA
CGCGGTGCAGACAACGGCGCTGCCGCTCCTGTCGTCGCTCCGAGGGACGA
AAATACCGGGCTGTTGGAAGGGATGGGCGACGGTTCGCAGGATCTCGAGG
ACATTTTCAAACCAGAGTCGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5238984..5242206+

>mRNA_P-fluviatile_contig1.473.1 ID=mRNA_P-fluviatile_contig1.473.1|Name=mRNA_P-fluviatile_contig1.473.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2052bp|location=Sequence derived from alignment at P-fluviatile_contig1:5238984..5242206+ (Porterinema fluviatile SAG_2381)
ATGTCAGATGCAGCTTTGAAAGTAGATCCAGACTACTACAGCAATACACG
ATTGCTGGGGAATACCCTAAGCGGAGGAGTAGACGGCGGCGGCGGAGGCG
GCGGGCCAAGCTTCGGCGGCGGCGGGGCCGATGGCAGTAGCGTTAGAGGG
TTGCCGGACCTTCCTGACTACCTGGTGCGGCAGCACTCGTTGCTCGGCTT
TTATCTGTCGCTCAATCCTGGGGATGAAGATGTCAGATGCAGCTTTGAAA
GTAGATCCAGACTACTACAGCAATACACGATTGCTGGGGAATACCCTAAG
CGGAGGAGTAGACGGCGGCGGCGGAGGCGGCGGGCCAAGCTTCGGCGGCG
GCGGGGCCGATGGCAGTAGCGTTAGAGGGTTGCCGGACCTTCCTGACTAC
CTGGTGCGGCAGCACTCGTTGCTCGGCTTTTATCTGTCGCTCAATCCTGG
GGATGAAGCCGACGCAGAACGGCACTGGGGCTTTCCTCAGCCACAGCGGG
CGGCGATCGCGGGCGTGACCGTGGTCGTGCCGCTCGTCCTCGCTCTATTC
CTCGACGCCGACGCAGAACGGCACTGGGGCTTTCCTCAGCCACAGCGGGC
GGCGATCGCGGGCGTGACCGTGGTCGTGCCGCTCGTCCTCGCTCTATTCC
TCGACGGATCTTGGCTGTGGAAAGCTTGCGTCATCTCGGTAGTCGCCGTG
GGAGCCAGACTGGTCGTGAGCTTCTGCTTAGCCACGGATCTTGGCTGTGG
AAAGCTTGCGTCATCTCGGTAGTCGCCGTGGGAGCCAGACTGGTCGTGAG
CTTCTGCTTAGCCACGTTCTCTGAAGTCGAAGTAACCGTCCAGGAGCACA
CCCTCTCGGTGTGGCCGCACTTCGTTTTGGGCACCCTGGCCGTCACGGGT
CTGATCTGGTTCGTGACTGCGGCGGCGTCGGGCACGGGATGGAGCACAAT
GTGGCTCTGCTTCACGTCTCTGCTGTTCCTCGCCTGCTCGGAGGCTGCCC
TCCGGGGGTCATGTGATTCTCTGAAGTCGAAGTAACCGTCCAGGAGCACA
CCCTCTCGGTGTGGCCGCACTTCGTTTTGGGCACCCTGGCCGTCACGGGT
CTGATCTGGTTCGTGACTGCGGCGGCGTCGGGCACGGGATGGAGCACAAT
GTGGCTCTGCTTCACGTCTCTGCTGTTCCTCGCCTGCTCGGAGGCTGCCC
TCCGGGGGTCATGTGAGTGGCATTTCCGGTGGTGGGCACCGACCGCGCGT
TTCGCCTTCCTCAAGCCGTGGGGTGACAGCCTCGCGGCCGGCGGGGCGGG
TGGCCGGGCCGGGCTCGAGGGAGGAGGACTCGGTAGCGGGGGATACGCGC
CACCTCGACCATCAGCGGCGCCGCCAGCGGTGGCACCTCGAACAGAATAT
GACAGCATCGGCATGGGCGCAAGGGGCGCTGTCGGTGTCGGCGGCAGTGC
CGGCATCGGTGGCGGAAGCCTTGGTGGAGTTGGAGGTGGAAGGCTGGATG
AAGATGGAGGCGAAGGTGGCTGTGGCATTTCCGGTGGTGGGCACCGACCG
CGCGTTTCGCCTTCCTCAAGCCGTGGGGTGACAGCCTCGCGGCCGGCGGG
GCGGGTGGCCGGGCCGGGCTCGAGGGAGGAGGACTCGGTAGCGGGGGATA
CGCGCCACCTCGACCATCAGCGGCGCCGCCAGCGGTGGCACCTCGAACAG
AATATGACAGCATCGGCATGGGCGCAAGGGGCGCTGTCGGTGTCGGCGGC
AGTGCCGGCATCGGTGGCGGAAGCCTTGGTGGAGTTGGAGGTGGAAGGCT
GGATGAAGATGGAGGCGAAGGTGGCTACAACGGCGCTGCCGCTCCTGTCG
TCGCTCCGAGGGACGAAAATACCGGGCTGTTGGAAGGGATGGGCGACGGT
TCGCAGGATCTCGAGGACATTTTCAAACCAGAGTCGTGAACAACGGCGCT
GCCGCTCCTGTCGTCGCTCCGAGGGACGAAAATACCGGGCTGTTGGAAGG
GATGGGCGACGGTTCGCAGGATCTCGAGGACATTTTCAAACCAGAGTCGT
GA
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