mRNA_P-fluviatile_contig1.468.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig1.468.1
Unique Name	mRNA_P-fluviatile_contig1.468.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig1.468.1 vs. uniprot
Match: A0A6H5JLT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT0_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 7.360e-24
Identity = 76/190 (40.00%), Postives = 105/190 (55.26%), Query Frame = 1

Query:  346 LYDSIREAIKAAADAASVGERLRMDDRQASTSGRRQEDNLLERQLDRFAEEAHKSTKSAKNVKKQRLRPSEQQLGEGRDSRHKRPRQQAGEQEKVPKEEAFPSCNSEIDGEKEAIGDCVDGRREKRSGWRDDECLSLVAEAFADELDLLRKDAHFGSSARIIAAMADMTRCLAGGLDRTEQMMLLDSATR 915
            LYD+ R+AI+ A+   +  E    D + A  + R Q ++LL+++L R  EE ++ST+  +N      + ++     G     KR R                  + E++   E  GD   G  E  +  ++DECL L+AEAFAD+LDLLRKD HFG SA  IAAMADM RC+AGGLD  EQ MLLD+A R
Sbjct:   10 LYDAARQAIRDASAGGAATEAAGRD-QDAYVAKRPQHNDLLDKKLHRSVEEMYQSTRGEQNS----AQGTQDVQFSGISGNKKRQR------------------HDEVEKPAEDAGD-ASGGEEGHATTQEDECLGLMAEAFADDLDLLRKDEHFGGSANDIAAMADMMRCIAGGLDSIEQRMLLDNAAR 175

[Close]

BLAST of mRNA_P-fluviatile_contig1.468.1 vs. uniprot
Match: D8LNF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF4_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.840e-17
Identity = 68/175 (38.86%), Postives = 94/175 (53.71%), Query Frame = 1

Query:  346 LYDSIREAIKAAADAASVGERLRMDDRQASTSGRRQEDNLLERQLDRFAEEAHKSTKSAKNVKKQ-----RLRPSEQQLGEGRDSRHKRPRQQAGEQEKVPKEEAFPSCNSEIDGEKEAIGDCVDGRREKRSGWRDDECLSLVAEAFADELDLLRKDAHFGSSARIIAAMADMTR 855
            LYD+ REAI+ A+   +  E +  D + A  + R Q D++L+++L R  EE + ST+  +N   Q     +L  S+  +G  +  RH        + E+ P E+A               GD  DG  E     ++DECL L+AEAFAD+LDLLRKD HFG SA  IAAMADM R
Sbjct:   10 LYDAAREAIRDASAGGAAAEAVGRD-QDACVATRPQHDDVLDKKLHRSVEEMYHSTRGQQNSSTQGTPDVQLSASDSGVGNKKRQRH--------DGEEAPTEDA---------------GDASDGE-EGHPTTQEDECLGLMAEAFADDLDLLRKDDHFGGSANDIAAMADMMR 159

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig1.468.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig1.468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JLT0_9PHAE	7.360e-24	40.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNF4_ECTSI	6.840e-17	38.86	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig1	contig	P-fluviatile_contig1:5198656..5201493 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-04_004060.1
Exons	2
Model size	1215
Cds size	591
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig1.468.1	prot_P-fluviatile_contig1.468.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig1 5198983..5201196 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815340.0224473-UTR-P-fluviatile_contig1:5198655..5198982	1622815340.0224473-UTR-P-fluviatile_contig1:5198655..5198982	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 5198656..5198982 +
1693561553.0809565-UTR-P-fluviatile_contig1:5198655..5198982	1693561553.0809565-UTR-P-fluviatile_contig1:5198655..5198982	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 5198656..5198982 +
1622815340.0560026-UTR-P-fluviatile_contig1:5201196..5201493	1622815340.0560026-UTR-P-fluviatile_contig1:5201196..5201493	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 5201197..5201493 +
1693561553.1044028-UTR-P-fluviatile_contig1:5201196..5201493	1693561553.1044028-UTR-P-fluviatile_contig1:5201196..5201493	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 5201197..5201493 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815340.0338802-CDS-P-fluviatile_contig1:5198982..5199509	1622815340.0338802-CDS-P-fluviatile_contig1:5198982..5199509	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 5198983..5199509 +
1693561553.088857-CDS-P-fluviatile_contig1:5198982..5199509	1693561553.088857-CDS-P-fluviatile_contig1:5198982..5199509	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 5198983..5199509 +
1622815340.0464761-CDS-P-fluviatile_contig1:5201132..5201196	1622815340.0464761-CDS-P-fluviatile_contig1:5201132..5201196	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 5201133..5201196 +
1693561553.096709-CDS-P-fluviatile_contig1:5201132..5201196	1693561553.096709-CDS-P-fluviatile_contig1:5201132..5201196	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 5201133..5201196 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig1:5198656..5201493+
coding sequence from alignment at P-fluviatile_contig1:5198656..5201493+

protein sequence of mRNA_P-fluviatile_contig1.468.1

>prot_P-fluviatile_contig1.468.1 ID=prot_P-fluviatile_contig1.468.1|Name=mRNA_P-fluviatile_contig1.468.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=197bp
MEPYCKLYDSIREAIKAAADAASVGERLRMDDRQASTSGRRQEDNLLERQ
LDRFAEEAHKSTKSAKNVKKQRLRPSEQQLGEGRDSRHKRPRQQAGEQEK
VPKEEAFPSCNSEIDGEKEAIGDCVDGRREKRSGWRDDECLSLVAEAFAD
ELDLLRKDAHFGSSARIIAAMADMTRCLAGGLDRTEQMMLLDSATR*

mRNA from alignment at P-fluviatile_contig1:5198656..5201493+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig1.468.1 ID=mRNA_P-fluviatile_contig1.468.1|Name=mRNA_P-fluviatile_contig1.468.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2838bp|location=Sequence derived from alignment at P-fluviatile_contig1:5198656..5201493+ (Porterinema fluviatile SAG_2381)
GGGCATTGCGCTGTCCTACGTTGGTTGAAGCAACTGTCGCTACCCACGAC
GATCTCTTGCGGATATTTATTATTTCATATCCTGCTGCTGCTTAACGGGC
GCAGAGGGCGACATTTACAGCATTATTCCGGAGCATTAATCTCGTTGGGT
GTGTGTGTGCGGTGCAAATCATACCCCAACTAAGGACGGAGACACATACG
GACATCTGGGGCTACGCTGCTGGAGAACACGAATGGGCCGTGAGCCCATC
CACCAGTTGAGAGAAGTGGCACCAGCCTGTTGCCGGAGACGCCATAAATT
CGCTGGACCCGTTTAAGAGGAGAAAAAATGGAGCCGTACTGCAAGCTTTA
CGACTCTATTCGAGAAGCAATCAAGGCCGCCGCTGATGCGGCATCGGTAG
GAGAACGTCTCCGAATGGACGACAGGCAGGCTTCGACCTCTGGCCGACGA
CAAGAAGACAATCTTCTCGAGCGTCAGCTGGATCGCTTTGCAGAAGAGGC
GCACAAGAGCACCAAGAGCGCGAAAAACGTGAAAAAGCAGCGATTGCGAC
CAAGTGAGCAGCAGCTTGGTGAAGGCCGTGACAGTCGTCACAAGCGCCCA
CGACAACAAGCAGGCGAACAAGAGAAAGTTCCGAAAGAAGAGGCATTCCC
CTCTTGCAATAGTGAAATCGATGGAGAAAAGGAAGCCATTGGTGATTGCG
TTGATGGAAGGCGTGAGAAAAGAAGCGGATGGAGGGACGACGAGTGTCTC
AGCCTTGTTGCCGAGGCGTTTGCGGATGAGCTTGACCTTCTGCGCAAGGA
TGCACACTTTGGCAGCTCGGCGAGGATTATCGCTGCCATGGCGGACATGA
CACGGTGAGTGAGATCGAGATTATACCAGTTCAGGGGCTTTTAAGGGTCT
CCTAATAGACACCCCCGTCTGGTCCGGACGTTTTCTTACTACAAATCCAG
GATGATGTGGTGTATGTACAACATGTACGCGGGGGGAAAAAAATCCCGCA
GTGAACGAGTCCCGAAGCTAATTGCGACATCCGTGCAGAGAACACCGTAG
GTAGGCGGGTGACGTGCGTTTCGGTATGCTCGAAACAACTGCTGGGGAGG
AGAAACCGAACGTCGCAGCAGGAACAAAAAACACCTGAATATGGACCGAA
GGTAATCGTTCGACGCCACTGGACTCACCGCATGTAGACTAGTCCGACCT
TCTTGCATGGTGCGCATCATCCAAGGCAGCTACTGACATGAGGTGAAGTT
TGACGTAGCCCAGTTTTTGAGCCACTGATGCGCCCCGCGATGTCTTAGCT
CTAGAACAGCTGCGAGCGTGTCAACACACATGACACATGCAGAGTGCGGC
GAACTGATTGCGTCCCACGTGCCACCTTCCTCGAACCGCAGCCGTGCCGC
ATTTTTGTTCTCATTTTGCCTAGTGCAGAGTTGATTTTGATTCTTCAAGG
AACTTTTGAGGTAAACTTGCTGGTACGCATGGAAGGAGAACCCCCTTGTG
CCACTCTGTGCGCCAATCCGTAGAAGCTGAAATGTAACCATAGATGATTA
GTCAAATGGTTTGATTTCAGCTTTTCGATGTCGGAAGCCATACGTATCCT
GTGTGGATGTGGGCGATGGCCTGAGTATGACTTGAAGGTAAATACTCCGG
TTGGACGTATAGCAGCGCTGGTGAGGGGAGTCGATCTCCCCGGAAGGAAA
GTGGGGGTTCTATGAACCTCACGGTGTTTTTTTGTAGAAGCTGAAATCAA
ACCATTTGACTTGTCAGCGCTGACTAGGCTTGGCTTCCACAAAGTATGTT
GGGGTTGAGACCCGGACTACATGCGATTGTTTCCTGAGACCGTGGATACT
CTTGGTCTGGGCGGAGCTGACGGAAGGACTCAATGTCGAAGGCTCTAACT
ATTCTGTGTGGATGTGGGCGATGAATTGAGTATGATTTTAAGTGAAATAC
TCAAGTTGGACGGCGCTGGCGAGGGGAGTCGCTCTCCCCGAAAGGGAAGT
GGGGGTTCCTTGAACCCCACGATGTACTTTAGAAACTGAAATCAAACCAT
TCGATTAGTCAGCGCTGACTAGTCACATGGTTTGATTTCAGCTTCTGCAA
ATCACACGACATTTCATGCCGATCGCCTGCCCACTGCTCAGGTGTACTAC
TTCCCAGCATGTGAATGGCTGGGTGCTCCCCGTTGTCATTCACAACCGGT
GAAATCGAAATCGGCTGTCTGTGGATCGTAAGAGGCCGCGCAGATAAAAT
CCTGAATCCCCTATCTTCTCTCCGAAGCCTCTGTTCACCATCCCACTTCG
CGAGGGATGCGGCGGGCTCTGGTATGCGACTCCAACTAAAAGCAAGTTCG
TGTTGTTGGGCCGAGGAACTCTATGCATTGTATCTAAGGAGTATTTATCA
GCCTCGCTTGGTTTGCCTGACTTTGACAGCCTTCGATCCACCGGTGGGGT
GCTCTTATTCACGCCGGTTCGCCGCAGGTGTCTAGCAGGCGGATTGGACA
GAACAGAGCAAATGATGCTCTTGGACAGCGCAACAAGATGACCCACATAG
GAGATCACGACGTGCGATCCTGTTCATGTCGGTTGGGTAGAACGCGTTGT
TCGTGGATGCATGGACAGGGGTGGAGTACGGGCTTGACGTCCCCCTCGTT
GAGAGGATTTGGATAGCATGGCGATAGATTTACGCTTTCCAGGTGCGCGC
ACGCGCGGCACCAACCCATTACCAACTCAAAATTCGCTGTCAATGCTCGG
AGGGGTGGGCCCTCGTAGGCTGGAATTTTGATTATTGTAAACAGCACGAA
GGCCGCGTATCCTTCGAGGGGTTAGTTTCAGATGCGTT

Coding sequence (CDS) from alignment at P-fluviatile_contig1:5198656..5201493+

>mRNA_P-fluviatile_contig1.468.1 ID=mRNA_P-fluviatile_contig1.468.1|Name=mRNA_P-fluviatile_contig1.468.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1182bp|location=Sequence derived from alignment at P-fluviatile_contig1:5198656..5201493+ (Porterinema fluviatile SAG_2381)
ATGGAGCCGTACTGCAAGCTTTACGACTCTATTCGAGAAGCAATCAAGGC
CGCCGCTGATGCGGCATCGGTAGGAGAACGTCTCCGAATGGACGACAGGC
AGGCTTCGACCTCTGGCCGACGACAAGAAGACAATCTTCTCGAGCGTCAG
CTGGATCGCTTTGCAGAAGAGGCGCACAAGAGCACCAAGAGCGCGAAAAA
CGTGAAAAAGCAGCGATTGCGACCAAGTGAGCAGCAGCTTGGTGAAGGCC
GTGACAGTCGTCACAAGCGCCCACGACAACAAGCAGGCGAACAAGAGAAA
GTTCCGAAAGAAGAGGCATTCCCCTCTTGCAATAGTGAAATCGATGGAGA
AAAGGAAGCCATTGGTGATTGCGTTGATGGAAGGCGTGAGAAAAGAAGCG
GATGGAGGGACGACGAGTGTCTCAGCCTTGTTGCCGAGGCGTTTGCGGAT
GAGCTTGACCTTCTGCGCAAGGATGCACACTTTGGCAGCTCGGCGAGGAT
TATCGCTGCCATGGCGGACATGACACGATGGAGCCGTACTGCAAGCTTTA
CGACTCTATTCGAGAAGCAATCAAGGCCGCCGCTGATGCGGCATCGGTAG
GAGAACGTCTCCGAATGGACGACAGGCAGGCTTCGACCTCTGGCCGACGA
CAAGAAGACAATCTTCTCGAGCGTCAGCTGGATCGCTTTGCAGAAGAGGC
GCACAAGAGCACCAAGAGCGCGAAAAACGTGAAAAAGCAGCGATTGCGAC
CAAGTGAGCAGCAGCTTGGTGAAGGCCGTGACAGTCGTCACAAGCGCCCA
CGACAACAAGCAGGCGAACAAGAGAAAGTTCCGAAAGAAGAGGCATTCCC
CTCTTGCAATAGTGAAATCGATGGAGAAAAGGAAGCCATTGGTGATTGCG
TTGATGGAAGGCGTGAGAAAAGAAGCGGATGGAGGGACGACGAGTGTCTC
AGCCTTGTTGCCGAGGCGTTTGCGGATGAGCTTGACCTTCTGCGCAAGGA
TGCACACTTTGGCAGCTCGGCGAGGATTATCGCTGCCATGGCGGACATGA
CACGGTGTCTAGCAGGCGGATTGGACAGAACAGAGCAAATGATGCTCTTG
GACAGCGCAACAAGATGAGTGTCTAGCAGGCGGATTGGACAGAACAGAGC
AAATGATGCTCTTGGACAGCGCAACAAGATGA