mRNA_P-fluviatile_contig1.467.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.467.1
Unique NamemRNA_P-fluviatile_contig1.467.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig1.467.1 vs. uniprot
Match: D8LNF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNF5_ECTSI)

HSP 1 Score: 348 bits (892), Expect = 3.020e-110
Identity = 183/242 (75.62%), Postives = 206/242 (85.12%), Query Frame = 1
Query:  295 PSPTKTCKLNHSPSDADNKQLPAAA---GRAVTVTAEGAGPTDSERVEAQALSSVGLAVGSRLEVMWLLEDDEKSVEKWWGCSVAGAKTGEREEGEGRPVFTLHYDAYEAFEEANHDVCFVDRYRLVHLEDGSEMTWKREGEEVDREAVLASLADEDVDLQEVMAAQEEENDGQSAESIETQGMEALAQLPHHQQVAMAAGFRRMADVVKEHLRAKM-QDGGDVVVSAADIENMFRDVRGGG 1008
            P  +KT K N S     ++  P  A   G  V VTAEGA PTDSERVEA+ L S+GLAVG+RLEVMWLLEDD+KSVEKWWGCSVAGAKTGER+E EGRPVFTLHYDAYEAFEEA+HDVCFVDRYRLVHLEDG+EMTWKREGEEVDREAVLASLADEDV+LQEVMAAQEEE+  + AES+ET+ M+A+AQLP HQQ AM AG+RRMADV+K+HLRAK+ Q GG+ VVS AD+ENMFRDVRG G
Sbjct:   41 PPASKTSKPNSSEDKKKDEVQPTPASGGGVVVPVTAEGAQPTDSERVEAECLRSLGLAVGTRLEVMWLLEDDDKSVEKWWGCSVAGAKTGERDEEEGRPVFTLHYDAYEAFEEADHDVCFVDRYRLVHLEDGAEMTWKREGEEVDREAVLASLADEDVNLQEVMAAQEEEDANEGAESVETRSMKAIAQLPPHQQAAMMAGYRRMADVIKKHLRAKITQTGGETVVSEADVENMFRDVRGSG 282          
BLAST of mRNA_P-fluviatile_contig1.467.1 vs. uniprot
Match: A0A8J4C7I1_9CHLO (Uncharacterized protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C7I1_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 2.100e-21
Identity = 72/215 (33.49%), Postives = 112/215 (52.09%), Query Frame = 1
Query:  403 GPTDSERVEAQALSSVGLAVGSRLEVMWLLEDD-EKSVEKWWGCSVAGAKTGEREEGEGRPVFTLHYDAYEAFEEANHDVCFVDRYRLVHLEDGSEMTWKREGEEVDREA----------------------VLASLADEDVDLQEVMAAQEEENDGQSAESIETQGMEALAQLPHHQQVAMAAGFRRMADVVKEHLRAKMQDGGDVVVSAADIE 978
            G   ++++E + L ++G+ VG R+EV W++E D E++  +WWG ++ G       E  G PV+ L YD Y AFE+  + V F+  ++L  L +  E+TW+REG+E D +                       VL S+AD +  +QE  A       GQ  + +E Q   AL  L   +++A+AAGFR   D + E LR +   G D VV+A DI+
Sbjct:   34 GNFQNDKIEIRKLDAIGVTVGGRVEVKWMVEPDGEEAYLRWWGATIVGPSNQPDVERPGAPVYELLYDNYGAFEQERNHVVFIGEHKLHQLGEAGELTWRREGDEWDDDCDEXXXXXXXXXEREEGIRTEGDVLYSMADLNRMVQEDFA-------GQDLDELERQ---ALQSLEPSKRIAVAAGFRDFTDDLSEFLRERC--GQDGVVTADDIK 236          
BLAST of mRNA_P-fluviatile_contig1.467.1 vs. uniprot
Match: A0A8J4LMH7_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LMH7_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 1.110e-19
Identity = 72/213 (33.80%), Postives = 111/213 (52.11%), Query Frame = 1
Query:  388 TAEGAGPTDSERVEAQALSSVGLAVGSRLEVMWLLEDD-EKSVEKWWGCSVAGAKTGEREEGEGRPVFTLHYDAYEAFEEANHDVCFVDRYRLVHLEDGSEMTWKREGEE-----------VDREAVLASLADEDVDLQEVMA----AQEEENDGQSAESIETQGMEALAQLPHHQQVAMAAGFRRMADVVKEHLRAKMQDGGDVVVSAADIE 978
            T +  G   +++ E   L ++G+AVG R+EV WL+E D E++  +WWG ++ G       E    PV+ L YDA+  FE+    V F+  +++  LE+  E+TW+REG+E            D EA +      D D+   MA      +E+  GQ  + +E Q   AL  L   +++A+AA FR  AD + E LR +   G D VV+A DI+
Sbjct:   29 TTQATGNFQNDKFEFPKLDALGVAVGGRIEVKWLVEPDGEEAYFRWWGATIVGPSNQPDVERPAAPVYELLYDAHGDFEQERSHVVFIGEHKMHQLEETDELTWRREGDEWDDGCDEDEGSEDAEAEMEEGIRTDGDVLYTMADVKRMVQEDLAGQDLDELERQ---ALQSLEPSKRIAVAAEFRDFADNLSEFLRERC--GQDGVVTADDIK 236          
BLAST of mRNA_P-fluviatile_contig1.467.1 vs. uniprot
Match: A0A7S2YY04_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2YY04_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 1.020e-7
Identity = 56/221 (25.34%), Postives = 103/221 (46.61%), Query Frame = 1
Query:  415 SERVEAQALSSVGLAVGSRLEVMWLLEDD-------EKSVEK-WWGCSVAGA--KTGEREEGEGRPV------------FTLHYDAYEAFEEANHDVCFVDRYRLVHLEDGSEMTWKREGEEVD---REAVLASLADEDVDLQEVMAAQEEENDGQSAESIETQGMEALAQLPHHQQVAMAAGFRRMADVVKEHLRAKMQDGGD-VVVSAADIENMFRDVR 999
            S++     +  +GL +GS +EV+W +          E S+++ WW   +     K G+ E  EG+              + L Y  YEAFEE    V F+D + L+  +D   + W+ +G + +   R+    + A+ D    +V+A      D   A+++ ++GM  L ++P  +Q   A+ +R MAD  K+ LR  +++ G+  V    D+  M   ++
Sbjct:   88 SQKCNLHPVKDLGLRIGSTIEVLWEIASPDAVDATGEASLDRVWWAGQLVAEEEKEGQEEVQEGQEAEAGSLPFAASSKWRLRYQKYEAFEEEERTVVFLDPHLLLDFDDMQVLEWREDGSDYEPEMRQRPEFAAAERD----DVVAI----GDMAGADAV-SEGMRELNKMPFDKQQIFASSYRVMADSFKQKLREILKNKGEGYVFGEEDVRTMIEGIK 299          
BLAST of mRNA_P-fluviatile_contig1.467.1 vs. uniprot
Match: C1DYK3_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1DYK3_MICCC)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-5
Identity = 62/213 (29.11%), Postives = 97/213 (45.54%), Query Frame = 1
Query:  424 VEAQALSSVGLAVGSRLEVMWLL-EDDEKSVEKWWGCSV-AGAKTGEREEGEGRPVFTLHYDAYEA--FEEANHDVCFVDRYRLVHLEDGSEMTWKREG---EEVDREAVLASLADE-------------DVDLQEVMAAQE----EENDGQSAESIETQGMEALAQLPHHQQVAMAAGF----RRMADVVKEHLRAKMQDGGDVVVSAADIE 978
            VEA    ++GL+ G RLEV W++ +DD++    WW C++ A   +G     E      LHYDA EA  F        F +   +    +G  + W+REG   ++VD +       D              D+ L++++  Q     E N G+    +E  GM   A LP  +Q AMA  F     R+  ++KE L+A+   G   V++  DI+
Sbjct:   66 VEASVAPNLGLSEGDRLEVRWVITDDDDEDTVVWWPCTLRAIVPSGPSASWE------LHYDANEAHGFAAEVRPATFTNSRWVHDPGEGQHLRWRREGSTEDDVDDDXXAGDADDPNIVYAAEIDPDEGDLSLEDLVNRQRVVDAERNGGEGG--LEAAGMATFASLPMERQHAMAGAFLDMKERITSLIKE-LQARHGPG--YVITKDDID 267          
BLAST of mRNA_P-fluviatile_contig1.467.1 vs. uniprot
Match: A0A7S2YY33_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2YY33_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 3.220e-5
Identity = 47/180 (26.11%), Postives = 84/180 (46.67%), Query Frame = 1
Query:  514 EKWWGCSVAGA--KTGEREEGEGRPV------------FTLHYDAYEAFEEANHDVCFVDRYRLVHLEDGSEMTWKREGEEVD---REAVLASLADEDVDLQEVMAAQEEENDGQSAESIETQGMEALAQLPHHQQVAMAAGFRRMADVVKEHLRAKMQDGGD-VVVSAADIENMFRDVR 999
            E+WW   +     K G+ E  EG+              + L Y  YEAFEE    V F+D + L+  +D   + W+ +G + +   R+    + A+ D    +V+A      D   A+++ ++GM  L ++P  +Q   A+ +R MAD  K+ LR  +++ G+  V    D+  M   ++
Sbjct:    3 EQWWAGQLVAEEEKEGQEEVQEGQEAEAGSLPFAASSKWRLRYQKYEAFEEEERTVVFLDPHLLLDFDDMQVLEWREDGSDYEPEMRQRPEFAAAERD----DVVAI----GDMAGADAV-SEGMRELNKMPFDKQQIFASSYRVMADSFKQKLREILKNKGEGYVFGEEDVRTMIEGIK 173          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LNF5_ECTSI3.020e-11075.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J4C7I1_9CHLO2.100e-2133.49Uncharacterized protein n=3 Tax=Volvox reticulifer... [more]
A0A8J4LMH7_9CHLO1.110e-1933.80Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]
A0A7S2YY04_9CHLO1.020e-725.34Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
C1DYK3_MICCC1.940e-529.11Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
A0A7S2YY33_9CHLO3.220e-526.11Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5193751..5198542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score299.3
Seed ortholog evalue1.2e-78
Seed eggNOG ortholog2880.D8LNF5
EggNOG OGs2E99Q@1,2SFNQ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_004050.1
Exons5
Model size2503
Cds size543
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815339.9195952-UTR-P-fluviatile_contig1:5193750..51952301622815339.9195952-UTR-P-fluviatile_contig1:5193750..5195230Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5193751..5195230 -
1693561553.0155482-UTR-P-fluviatile_contig1:5193750..51952301693561553.0155482-UTR-P-fluviatile_contig1:5193750..5195230Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5193751..5195230 -
1622815339.990117-UTR-P-fluviatile_contig1:5198062..51985421622815339.990117-UTR-P-fluviatile_contig1:5198062..5198542Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5198063..5198542 -
1693561553.0727854-UTR-P-fluviatile_contig1:5198062..51985421693561553.0727854-UTR-P-fluviatile_contig1:5198062..5198542Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5198063..5198542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815339.9339037-CDS-P-fluviatile_contig1:5195230..51953831622815339.9339037-CDS-P-fluviatile_contig1:5195230..5195383Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5195231..5195383 -
1693561553.0269394-CDS-P-fluviatile_contig1:5195230..51953831693561553.0269394-CDS-P-fluviatile_contig1:5195230..5195383Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5195231..5195383 -
1622815339.9437153-CDS-P-fluviatile_contig1:5196022..51961211622815339.9437153-CDS-P-fluviatile_contig1:5196022..5196121Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5196023..5196121 -
1693561553.0366008-CDS-P-fluviatile_contig1:5196022..51961211693561553.0366008-CDS-P-fluviatile_contig1:5196022..5196121Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5196023..5196121 -
1622815339.9523997-CDS-P-fluviatile_contig1:5196566..51966841622815339.9523997-CDS-P-fluviatile_contig1:5196566..5196684Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5196567..5196684 -
1693561553.0455065-CDS-P-fluviatile_contig1:5196566..51966841693561553.0455065-CDS-P-fluviatile_contig1:5196566..5196684Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5196567..5196684 -
1622815339.9637034-CDS-P-fluviatile_contig1:5196962..51970961622815339.9637034-CDS-P-fluviatile_contig1:5196962..5197096Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5196963..5197096 -
1693561553.0570614-CDS-P-fluviatile_contig1:5196962..51970961693561553.0570614-CDS-P-fluviatile_contig1:5196962..5197096Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5196963..5197096 -
1622815339.9773772-CDS-P-fluviatile_contig1:5198023..51980621622815339.9773772-CDS-P-fluviatile_contig1:5198023..5198062Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5198024..5198062 -
1693561553.0648873-CDS-P-fluviatile_contig1:5198023..51980621693561553.0648873-CDS-P-fluviatile_contig1:5198023..5198062Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5198024..5198062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.467.1prot_P-fluviatile_contig1.467.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5195231..5198062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.467.1

>prot_P-fluviatile_contig1.467.1 ID=prot_P-fluviatile_contig1.467.1|Name=mRNA_P-fluviatile_contig1.467.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=181bp
MWLLEDDEKSVEKWWGCSVAGAKTGEREEGEGRPVFTLHYDAYEAFEEAN
HDVCFVDRYRLVHLEDGSEMTWKREGEEVDREAVLASLADEDVDLQEVMA
AQEEENDGQSAESIETQGMEALAQLPHHQQVAMAAGFRRMADVVKEHLRA
KMQDGGDVVVSAADIENMFRDVRGGGSGRV*
back to top

mRNA from alignment at P-fluviatile_contig1:5193751..5198542-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.467.1 ID=mRNA_P-fluviatile_contig1.467.1|Name=mRNA_P-fluviatile_contig1.467.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4792bp|location=Sequence derived from alignment at P-fluviatile_contig1:5193751..5198542- (Porterinema fluviatile SAG_2381)
CGATACGCTGTGAAGAGAAGTAGATTATCTTGTGCTCGACGTCAAGGGGA AAATCAAGGCTATCTTATTGAGAAAGCTAGGGGTTGACAAGGGCAGCATT AGCTCGGGGTGAGCCGTGTATTGGGTTCATTTCGACCTGCAGCCGTGCAG CCGTCGCGCCTCCAGCATGTCTTCTCCAGGATCAAGTGGGGCAATGAGGG AGCAGCAGCAGGGGGAGGGGAAGGCGACAAAGCGAGCTTCGGAGGAACAG GAGCAGGGTCAGCAGGAGGAGCCAGCGATTGTTGATGGGACTGACCCTCC CCGACAAAGACTTGTAAACTAAATCACTCTCCGAGCGATGCAGACAACAA ACAGCTGCCGGCGGCGGCGGGACGAGCCGTTACGGTAACGGCGGAGGGTG CGGGACCCACGGACTCGGAGCGGGTTGAGGCGCAGGCCCTGAGCTCGGTT GGCTTGGCCGTCGGCAGTAGACTGGAAGTGATGTGGCTGTTGGAGGATGA CGAGAAGAGCGTTGAGAAGGTGAGAGGGCGCCAGAAATGGTCGGAGAGTC AAGCGTAGCTGGCATTTGCGCTCCCTCTTGGAACTCGCTGCACGACGCCG CAGTGTGGCAAGCGTGGGAACAGGATACGGCCAAGGTCCAATCCGGAACG AATCGTAGTAGGCGCCACAAGCCAGCATCTTTCGATGCACACCTTCCTGA TCGTGTGTACAGTGCGAAACAAGCAATGCGTTCTGGTAATGACGCGCACA ACCTGTCATCGCGCGCGATGTTTCGGCGCCGTGTGCTTCGAGTTTCATGG CCCAAGGTTCCAGTACACGCAACTTGAGAGATCAAAGACATCGTCGCAAG GCACGCGGCGAATGATGACGACAGCAACATCAACTACCCGAGTCCAAGAG ATGCTATGGAAGCCTTGTCCTTATCGATTGTCTGGAGCGACATACGATCA CACAAGATGGTGCTGCGACTGGCTGATTTGCCACACCTGCAGGAATTTGA AAGTCGTGTCCGAATTTCGTGCGGCGAGCCAGTGTACGCTTTCCCCGAAT CGACTGCGCAGCTCTTGTATTCGTGTTGCTTGGAATGGCTCCAAATTTTT GTTAATACAAAAACTTCCTATGATATGTTCGGGGTAACTCTGTCGGTTAC CCCGACAACGATCTACACAGGATTTCGCCACGCCGGCCTCCCTTCCTTTC CGCGCTCAAGTGCTTATGTTCTGGCCTTACGGATGACCTTCGACATCCAA ACTCCCCGCGGGTGCTAACACCCGCGTACGTAATATTGCAATCTCCACCA AACCCCCTCATGGCCTTTCTGTTTGTCACCGTACCTGCCTTTCACCATTG TTTTCCTGCCTCGTCCGTGGGTGTTTGTCGCCACACCTGCTGTTTCACTG CCGTCATTTTCCTGCCTCCTCCGTGTGTGGCTGGTGAAACTTACAGTGGT GGGGCTGTTCGGTCGCCGGCGCCAAGACAGGAGAAAGGGAGGAAGGGGAA GGCCGGCCCGTGTTCACGCTGCACTACGACGCGTACGAGGCGTTCGAGGA GGCGAACCACGACGTTTGCTTCGTCGACAGGTGTGTGTGGCAACAACCGG CGTTGAATTGGTCCCTCGGCTAACTTGTGCTCGGCAGGTCATTGATTTTT GGAAGGGGGACGGAGCATTTTTCGCTGGAATAACCGGAATCGAAGTAAGC ATGTCTAGATCGGGAAAAATCGCCGACCGAGTACAAGCTAAGCTCGGCTG GGTGAAGTACGGGTGGCTTGCAAGTCCGCAGGCTTCTTCTTGCCGCTGAT GTCGATCGATGATCCTGAGGTTTGCCCTGCCTGCCCAAATGGCCCGTTGC GTTCGCAGGTACCGCCTGGTGCACCTCGAAGACGGGTCGGAGATGACTTG GAAGCGAGAGGGGGAGGAGGTGGATAGGGAGGCTGTCCTGGCTTCTCTTG CAGACGAGGATGTGGACCTCCAAGAGGTCAGTCTTTGTCCTCACATCCGG CCGCTCATGTTAGGGGCGTGAAATCCGAGATCCTCCCGTTTTGGCAGGCG ATGGGGAGGGGATGAAGGGAGCGGGTGCTGCGAGAAACTTCGTAAGGGAT GCCGATTTTTGTGCAGAAGCAGCAGCGGCTGCCGCTGCGTTGGTGAGAGC GGCGGCGACAGCGATAGCTGCATCTTGGCTAACGACGAATATGCTCGTCC TGAACGCAGCCAGGTCCTTTAGACCGAACAGGCTTATGTTTGCGCAGAAA GATTGCACCGCCCTCTCTTGAGGAGAGCCAGACAGTATCGCGTTTTCCAA AATTGCTATCTACACACCATGAAACGACCTCTTTGTTGTGTGTGACATCG ATGCACAGCACAAACATGAAGAGGTGTAGCCTCAGCATTAATCGTGCGGT CATCGGACCACCCGCCCGCAGGTCATGGCGGCGCAGGAGGAGGAGAATGA TGGCCAGAGCGCCGAAAGCATAGAGACCCAAGGCATGGAAGCCCTGGCTC AGCTCCCCCACCACCAACAGGTGCGTTCATACACGGCTCGCCTCACGAGC TTCTATTGGGTGTTTCATATCACGTGCTTCCTCTATTTTCTCCGATTCGC TGTTCAGCATTTGCCCAGCGCCTCTTCCCTGACAATGTGGGCTATGTGGC TCTAGCGTGCCGTAAGGCTTTTGTGCTCATACAATGGACCATGGATATGT ATCATTCGCATCACAAAAGTCGGGTGTTATTGCTGCCGCCGTCGAAGCGT ATTCCGTGTCTCGACGGTTCTGAATTTTGCCGCACCTCGATGGAATTCAC TGGAATTCTGCTTCGTCATTTTCTGTAGACTTTCGACTTTGGAAGTTTTG CCTCCCTCTTCCGGCCATGTTCGCGTTCGGTCGAGGGAGATATCTCTTAA CCGTCTGTCATTGTACATGTCGTCCAAGGCCTTCCGCGGGTGTGTCTTGC GGCGACGCCTGTTTTGCCCAACGGCGAAAACTCGTTCATCGCGCCCGCGC CCTTTGGCCCCTTTCGCGCGACTCACGACGAGAAACATGAGTTTTTTTTT TAAGGTCGTCGCGTTCCATCATCCGAACACCACTTGAAACTTACCCGACG CCCTCCGATATGCCCCCCGCCCATCTTTTGTATCGGATCGCTGAATAACC TTACCCCAGGTAGCAATGGCCGCCGGATTCCGTCGAATGGCCGACGTCGT GAAGGAGCACCTGCGGGCGAAGATGCAGGACGGCGGGGACGTTGTCGTGT CCGCCGCGGATATTGAAAACATGTTCCGCGATGTCCGGGGTGGCGGCAGC GGTAGAGTCTAAAAATTCTGTTCAGCTGCCGTGAACACGTGTGAGCTCCG AAATCATGTTCCACGATGTCCGGGGTGGCGGCAGCGGTGGGGACTTAAGG TCCCTTTCCGCTGCCGTGAACCCGTGTGAGCTCCGAAGCTAAATACGGTG GGATGGGGCAGAAGGTTTTCGGTTCCCCATGTTTTGGTCGTGTTCCGCGG GGATCGGATTAGAGGTGACCGTCCCACGAACGTATTGGGTGGAAACTATG TATTCCTGTGTAGCCGGGACACCGCAGAGCAACACCATGAGAGAGTTTGT CCGCGACGCAGGCCGCGATGTGGTTGGTTGTGCCCACTGTCGGTGACGTC TTTTCGGTGCTGCTTTTTCTTCCTGGTGAGCGAATACATGATTTTTTCGC GGCCTGGTCGGGCGGCGACGTTGTTGTATGCAGAGCGGCCACGACACCAT TGTACGACAACCACCATCATGTCACTGGAGCGCACCCGTTATCTGTTTCG CTGGTTTTGCCCTCGATGGAAGTACACGTAGAAGGGTCGCCTCGGCCGGG CGGTAGTCGTGCGTACCGGGGGGTCTGGGGTCTTGTTTGTGCGCGCCAAT TCGTCGTTGCCCTACACGTAGAAGCAACAGATTGAAATGTAGTTTGAAGT GCTGCAATATTGTACGTTGGATAATGTGTGAGTGAGGGCGGCCGGTAAGC TTTCGGTGTGGTTCCCTTTCGTGCAGCTTTGGAAGCTGGTTTTGGGACGT GGAAAGTGAACCGCCAGACCAGATGGTGCAATGCCAGGACCCTGCTCCTT TCCTTGAGGTCAGGATGTTGCTGCTAGAGAGGGAATTTCGATCTTGGGAT AAAACGAGAGAGGGCACGAGATGCGTCGAGAAAACCTGGTACATTCGTTC TAGTCTAGTGCGACAAGCTTCTGTCCCCGAATCGCATGCGCACGCATTGC AGTGGTCAGGCAAACAGATTGTCTGGCACTGCGTATATTTTGATAGGAAT GCGTGTGTTATCTATCTGGATGTGTGATACAGGAATCTTTCGACCTCGAT GCTTTGTCAGTTACACAAGGGACCTGCACTTGCAAACATCCTATCTATTT TGCTGGATGCTCGGGTATGTTCTTACTCCGTGGGCGTTAAATGTAGTGTT TATGTATGGAGGTTCTTGCCCAGGCAGCGAAATGAGTTGTTGGAGCTCAG ACTAAATTTTGATTTTTTCAGGCTCAGGAGTGCGATGTAGACTGTAGTGG CCCTTTCTTTAGGTCTAGACTGTTCCTCGTCCCTTGGATTCCGCATTAAG CCGGTCGAAGACAAAGAAAGGAACATGCGTTTGCGACTATGCAAGAAGAC GGCCCTTCGCGGATCATGGCGCAAAGGCGTCGAACAGTACCTCGTCGCAG CGCTGCTTTGTTACGTGGTGATCGTCCTGACGTGAAAAGCTGTGACAAGC CACAGGAATGACAAATGTTTTTTGGTAACAAAAACCTTGGAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:5193751..5198542-

>mRNA_P-fluviatile_contig1.467.1 ID=mRNA_P-fluviatile_contig1.467.1|Name=mRNA_P-fluviatile_contig1.467.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1086bp|location=Sequence derived from alignment at P-fluviatile_contig1:5193751..5198542- (Porterinema fluviatile SAG_2381)
ATGTGGCTGTTGGAGGATGACGAGAAGAGCGTTGAGAAGATGTGGCTGTT
GGAGGATGACGAGAAGAGCGTTGAGAAGTGGTGGGGCTGTTCGGTCGCCG
GCGCCAAGACAGGAGAAAGGGAGGAAGGGGAAGGCCGGCCCGTGTTCACG
CTGCACTACGACGCGTACGAGGCGTTCGAGGAGGCGAACCACGACGTTTG
CTTCGTCGACAGTGGTGGGGCTGTTCGGTCGCCGGCGCCAAGACAGGAGA
AAGGGAGGAAGGGGAAGGCCGGCCCGTGTTCACGCTGCACTACGACGCGT
ACGAGGCGTTCGAGGAGGCGAACCACGACGTTTGCTTCGTCGACAGGTAC
CGCCTGGTGCACCTCGAAGACGGGTCGGAGATGACTTGGAAGCGAGAGGG
GGAGGAGGTGGATAGGGAGGCTGTCCTGGCTTCTCTTGCAGACGAGGATG
TGGACCTCCAAGAGGTACCGCCTGGTGCACCTCGAAGACGGGTCGGAGAT
GACTTGGAAGCGAGAGGGGGAGGAGGTGGATAGGGAGGCTGTCCTGGCTT
CTCTTGCAGACGAGGATGTGGACCTCCAAGAGGTCATGGCGGCGCAGGAG
GAGGAGAATGATGGCCAGAGCGCCGAAAGCATAGAGACCCAAGGCATGGA
AGCCCTGGCTCAGCTCCCCCACCACCAACAGGTCATGGCGGCGCAGGAGG
AGGAGAATGATGGCCAGAGCGCCGAAAGCATAGAGACCCAAGGCATGGAA
GCCCTGGCTCAGCTCCCCCACCACCAACAGGTAGCAATGGCCGCCGGATT
CCGTCGAATGGCCGACGTCGTGAAGGAGCACCTGCGGGCGAAGATGCAGG
ACGGCGGGGACGTTGTCGTGTCCGCCGCGGATATTGAAAACATGTTCCGC
GATGTCCGGGGTGGCGGCAGCGGTAGAGTCTAAGTAGCAATGGCCGCCGG
ATTCCGTCGAATGGCCGACGTCGTGAAGGAGCACCTGCGGGCGAAGATGC
AGGACGGCGGGGACGTTGTCGTGTCCGCCGCGGATATTGAAAACATGTTC
CGCGATGTCCGGGGTGGCGGCAGCGGTAGAGTCTAA
back to top