mRNA_P-fluviatile_contig1.449.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.449.1
Unique NamemRNA_P-fluviatile_contig1.449.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.449.1 vs. uniprot
Match: A0A8I5UFN9_PONAB (Uncharacterized protein n=1 Tax=Pongo abelii TaxID=9601 RepID=A0A8I5UFN9_PONAB)

HSP 1 Score: 59.7 bits (143), Expect = 1.250e-8
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = -1 
Query:   57 PRSDFTEIMRALGYPRPVSMDNFRSPNFQLVADALRSLFFRPP 185
            P +DFTE+MRALGYPR +SM+NFR+PNF LV++ L  L  RPP
Sbjct:    6 PWTDFTEMMRALGYPRHISMENFRTPNFGLVSEVLLWLVKRPP 48
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BLAST of mRNA_P-fluviatile_contig1.449.1 vs. uniprot
Match: A0A6H5KET1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KET1_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.220e-7
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = -1 
Query:   81 DFTEIMRALGYPRPVSMDNFRSPNFQLVADAL 176
            DFTEIMRALGYPR VSMDNFR+PNFQLVAD L
Sbjct:  331 DFTEIMRALGYPRSVSMDNFRAPNFQLVADVL 362
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BLAST of mRNA_P-fluviatile_contig1.449.1 vs. uniprot
Match: I3L455_HUMAN (Clusterin-associated protein 1 n=5 Tax=Boreoeutheria TaxID=1437010 RepID=I3L455_HUMAN)

HSP 1 Score: 56.2 bits (134), Expect = 2.340e-7
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = -1 
Query:   57 DFTEIMRALGYPRPVSMDNFRSPNFQLVADALRSLFFRPP 176
            +FTE+MRALGYPR +SM+NFR+PNF LV++ L  L  RPP
Sbjct:    8 NFTEMMRALGYPRHISMENFRTPNFGLVSEVLLWLVKRPP 47
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BLAST of mRNA_P-fluviatile_contig1.449.1 vs. uniprot
Match: A0A670JI74_PODMU (Uncharacterized protein n=1 Tax=Podarcis muralis TaxID=64176 RepID=A0A670JI74_PODMU)

HSP 1 Score: 53.9 bits (128), Expect = 2.080e-6
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = -1 
Query:   57 DFTEIMRALGYPRPVSMDNFRSPNFQLVADALRSLFFRPP 176
            DFTE+MRALGYPR +SM+NFR+PNF LV++ L  L  R P
Sbjct:   14 DFTEMMRALGYPRLISMENFRTPNFMLVSEILIWLVKRLP 53
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BLAST of mRNA_P-fluviatile_contig1.449.1 vs. uniprot
Match: A0A7S2RCX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCX5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.290e-6
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = -1 
Query:   81 DFTEIMRALGYPRPVSMDNFRSPNFQLVADAL 176
            +FTEIMR+LGYPR +S++NFR+PNFQLVAD L
Sbjct:    8 NFTEIMRSLGYPRLISVENFRTPNFQLVADVL 39
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BLAST of mRNA_P-fluviatile_contig1.449.1 vs. uniprot
Match: A0A7S0JWT9_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JWT9_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 4.040e-6
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = -1 
Query:   63 DFTEIMRALGYPRPVSMDNFRSPNFQLVADALRSLFFR 176
            +FTEIMRALGYPR +SM++FRSPNF LVAD L  L FR
Sbjct:   31 NFTEIMRALGYPRKLSMESFRSPNFPLVADILYWLVFR 68
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BLAST of mRNA_P-fluviatile_contig1.449.1 vs. uniprot
Match: A0A5A8CB06_CAFRO (Uncharacterized protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8CB06_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 4.570e-6
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = -1 
Query:   63 DFTEIMRALGYPRPVSMDNFRSPNFQLVADALRSLFFR 176
            +FTEIMRALGYPR +SM++FRSPNF LVAD L  L FR
Sbjct:    8 NFTEIMRALGYPRKLSMESFRSPNFPLVADILYWLVFR 45
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BLAST of mRNA_P-fluviatile_contig1.449.1 vs. uniprot
Match: A0A3Q0RYA7_AMPCI (Uncharacterized protein n=3 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q0RYA7_AMPCI)

HSP 1 Score: 52.4 bits (124), Expect = 5.670e-6
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = -1 
Query:   81 DFTEIMRALGYPRPVSMDNFRSPNFQLVADAL 176
            +FTE+MRALGYPR +SM+NFR+PNF LVA+ L
Sbjct:    8 NFTEMMRALGYPRLISMENFRTPNFTLVAEIL 39
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BLAST of mRNA_P-fluviatile_contig1.449.1 vs. uniprot
Match: L1J5S6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5S6_GUITC)

HSP 1 Score: 57.0 bits (136), Expect = 7.020e-6
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = -1 
Query:   63 DFTEIMRALGYPRPVSMDNFRSPNFQLVADALRSLFFR 176
            +FTE+MRALGY RPVS++NFR+PNF+LVAD LR L  R
Sbjct:    8 NFTEMMRALGYHRPVSVENFRNPNFELVADILRWLVKR 45
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BLAST of mRNA_P-fluviatile_contig1.449.1 vs. uniprot
Match: A0A8D0L249_SPHPU (Clusterin associated protein 1 n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0L249_SPHPU)

HSP 1 Score: 57.0 bits (136), Expect = 8.010e-6
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = -1 
Query:   42 SDFTEIMRALGYPRPVSMDNFRSPNFQLVADALRSLFFR-PPVSPLP 179
            SDFTE+MRALGYPR +SM+NFRSPNF LV++ L  L  R  P S +P
Sbjct:   22 SDFTEMMRALGYPRLISMENFRSPNFMLVSEILLWLVKRYEPQSDIP 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8I5UFN9_PONAB1.250e-865.12Uncharacterized protein n=1 Tax=Pongo abelii TaxID... [more]
A0A6H5KET1_9PHAE1.220e-790.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
I3L455_HUMAN2.340e-765.00Clusterin-associated protein 1 n=5 Tax=Boreoeuther... [more]
A0A670JI74_PODMU2.080e-665.00Uncharacterized protein n=1 Tax=Podarcis muralis T... [more]
A0A7S2RCX5_9STRA3.290e-675.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0JWT9_CAFRO4.040e-673.68Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8CB06_CAFRO4.570e-673.68Uncharacterized protein n=4 Tax=Sar TaxID=2698737 ... [more]
A0A3Q0RYA7_AMPCI5.670e-671.88Uncharacterized protein n=3 Tax=Clupeocephala TaxI... [more]
L1J5S6_GUITC7.020e-671.05Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A8D0L249_SPHPU8.010e-663.83Clusterin associated protein 1 n=1 Tax=Sphenodon p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5047738..5049897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size737
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.449.1prot_P-fluviatile_contig1.449.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5049481..5049897 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.5221431-UTR-P-fluviatile_contig1:5047737..50478201622815270.5221431-UTR-P-fluviatile_contig1:5047737..5047820Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5047738..5047820 +
1693561322.808211-UTR-P-fluviatile_contig1:5047737..50478201693561322.808211-UTR-P-fluviatile_contig1:5047737..5047820Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5047738..5047820 +
1622815270.5364661-UTR-P-fluviatile_contig1:5049243..50494801622815270.5364661-UTR-P-fluviatile_contig1:5049243..5049480Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5049244..5049480 +
1693561322.878752-UTR-P-fluviatile_contig1:5049243..50494801693561322.878752-UTR-P-fluviatile_contig1:5049243..5049480Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5049244..5049480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.5516298-CDS-P-fluviatile_contig1:5049480..50498971622815270.5516298-CDS-P-fluviatile_contig1:5049480..5049897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5049481..5049897 +
1693561322.895949-CDS-P-fluviatile_contig1:5049480..50498971693561322.895949-CDS-P-fluviatile_contig1:5049480..5049897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5049481..5049897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.449.1

>prot_P-fluviatile_contig1.449.1 ID=prot_P-fluviatile_contig1.449.1|Name=mRNA_P-fluviatile_contig1.449.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=139bp
MGWVLLLFSVVVVLLVAAATAAITGAAVKPLTIFFVIDSIRCRLNKRIFW
SEGIHRRSNVIEDSRTTVWHELFGHLVRIGSTSVERSKRIPSHGRIPYGR
QRVERILYSHRPPCSGQQIRSTFTRGVESRLLEGPAQTS
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mRNA from alignment at P-fluviatile_contig1:5047738..5049897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.449.1 ID=mRNA_P-fluviatile_contig1.449.1|Name=mRNA_P-fluviatile_contig1.449.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2160bp|location=Sequence derived from alignment at P-fluviatile_contig1:5047738..5049897+ (Porterinema fluviatile SAG_2381)
CAGCGTGGCGAGCTTCAGCAGCTCCTTCAGAGGGAGAAATGGGGAAGTGG
AGATACGGGCGGACGGAAGAAGAGGGACCGTAGGTAGGAAGGGGTACAGT
GCAGGGAGAGGGTGGGGACGGAGAGAGGGGTGTAGGCTCGATTGTTGGTC
GGAGTCATGCATGTGGCCGCACTGAGGGCATTGGACGACGGGCGCAATGA
GAGACGAAGCACGTGGACACCGTTTGCAGTAAACCGAGGAAACGTGTGTG
CGCAGGAGAGAAAAACGCCTGCGCTCTTCATCGCAAGCGTCGACCGCGCG
TCGTAACCGACTGACCGAAGAAACGCCGTCGGTGTCCGCGGGAGCAAAAC
AAAACCGGGGTCCCCGGAATAAGGAGGGCTGCATGCGTATCACCGTGATT
GTCATTGTTTGCCTCTCATTTCATCACACCGGATGGATTCCTCCGCGCAT
GCGCATGTCTTTCCACAACTTGACCGCGTGAACGTCGGAGAAGATAGATC
TTATGAATATTTATTTATGCATACATGCGGGCGCGATTTGATCTTGCTGG
ATTTCTTGCCGCTTCGAATGGACCCGTCCGCGCATGTTCTTCCGAGCATT
GGGGGGCCGGATATACGACGGCGGCAGGGCACCGAAAACGGCCGCCTCGT
GTGGAAACAACCTCCTTATATGGAGTAGGGAACCGCAAGGGTTTTTATGT
GATTGAAATTTTATGCCAAGCGATTGTACCCGCCCCTCATCGAACCACCG
CCGTTGTTCAGTACGCCTTATGCCCCCACCGCCCCCGTTAAGGTGGCGTA
CCTTGACCGCGTGACCGTCGGCGGCGTAGAGCTTCTTTGCGTTGAGCTTG
ATGTGGGCCTTGTTCAACATCGCCTGCGTGTGGGTGGGGTACCCAAGTAG
GGCATGAGAGCACAACAACAGATTTGAATTCGCGCCACCGATGAGTGCAT
CATACATGACTTTGCAACCCCTTTGTACGCCAAATCCTCCTCCTCTCCTC
GAGGGGAGCCGGCGAGAAAACTGCTCCCTCCGTGGGATCGAGGGTTCTCT
CTACGAACGAAATGCAAACGAGCGACGGATGCAAGCCGTAAGCTCAAACG
CAAACCACCTGCAGGCGAACGCGGCCGGGTGACATAGTAGCAACGAACGG
ACGAGAAAGATGCCGATAATAACCAGCGACCAACGCACAAAAAGAGAGAC
AAAACGGCAAGTAGTGGATGGACGctCTCTCTGTCTCTCTGTCTCTCTCT
GCCTCGCTCTCTCTCTGTCGCTGTCTCGCTCTCTGTCTGCCCGTCTATCA
CTCTCACTCTCCCTGTCTCTCTTTCACTCTCACTCTGTCTCCCTGTCTCT
CTCTGTCTCTCTGACTCTCTGACTCTCTGTCTCTCTGTCTCTCTCTCTCC
CTCTCACCGCCGCCACGCCCGTGAGAAAATCTACCCGGTCGCCCTCGCTC
TCGATGTTGTCCGACACTGTGATGTCCGGGTCGTAACGCTTGACCATCCA
GAACAGAGCGTCCGCTACGAGCTGAAAGTTGGGCGACCTGAAATTGTCCA
TAGACACCGGGCGCGGGTACCCGAGGGCTCGCATGATCTCGGTGAAATCT
GATCGAGGAGGCGGCCGGGTGAGGGGGAAGGAATCTGATTAGATTGAATT
TGATACTTGTGGGGGTAAGGGTAGCGCTCACTCAGCCTCGCATCATCATC
CAGGCACAAATCTATGGCATCACGTGGCATTCCGTTGGATTGAATGGGTT
GGGTACTGTTGCTGTTTTCTGTCGTTGTTGTTCTTCTTGTTGCTGCCGCT
ACCGCTGCTATTACTGGTGCTGCTGTCAAACCTTTGACGATATTTTTTGT
GATTGATTCGATTCGGTGTCGTCTGAATAAACGCATTTTTTGGTCAGAAG
GTATACACCGCCGAAGCAATGTCATTGAGGATTCACGGACTACTGTTTGG
CATGAGCTTTTCGGTCATCTGGTTAGAATTGGTTCTACTTCGGTCGAAAG
GAGCAAGCGCATTCCAAGCCACGGACGCATTCCATACGGACGGCAGCGCG
TTGAACGGATTTTGTACTCGCATCGACCGCCCTGCTCAGGCCAGCAAATC
AGAAGCACTTTCACCAGAGGGGTGGAGTCTCGGCTCCTTGAGGGGCCTGC
TCAGACCAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5047738..5049897+

>mRNA_P-fluviatile_contig1.449.1 ID=mRNA_P-fluviatile_contig1.449.1|Name=mRNA_P-fluviatile_contig1.449.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=834bp|location=Sequence derived from alignment at P-fluviatile_contig1:5047738..5049897+ (Porterinema fluviatile SAG_2381)
ATGGGTTGGGTACTGTTGCTGTTTTCTGTCGTTGTTGTTCTTCTTGTTGC
TGCCGCTACCGCTGCTATTACTGGTGCTGCTGTCAAACCTTTGACGATAT
TTTTTGTGATTGATTCGATTCGGTGTCGTCTGAATAAACGCATTTTTTGG
TCAGAAGGTATACACCGCCGAAGCAATGTCATTGAGGATTCACGGACTAC
TGTTTGGCATGAGCTTTTCGGTCATCTGGTTAGAATTGGTTCTACTTCGG
TCGAAAGGAGCAAGCGCATTCCAAGCCACGGACGCATTCCATACGGACGG
CAGCGCGTTGAACGGATTTTGTACTCGCATCGACCGCCCTGCTCAGGCCA
GCAAATCAGAAGCACTTTCACCAGAGGGGTGGAGTCTCGGCTCCTTGAGG
GGCCTGCTCAGACCAGCATGGGTTGGGTACTGTTGCTGTTTTCTGTCGTT
GTTGTTCTTCTTGTTGCTGCCGCTACCGCTGCTATTACTGGTGCTGCTGT
CAAACCTTTGACGATATTTTTTGTGATTGATTCGATTCGGTGTCGTCTGA
ATAAACGCATTTTTTGGTCAGAAGGTATACACCGCCGAAGCAATGTCATT
GAGGATTCACGGACTACTGTTTGGCATGAGCTTTTCGGTCATCTGGTTAG
AATTGGTTCTACTTCGGTCGAAAGGAGCAAGCGCATTCCAAGCCACGGAC
GCATTCCATACGGACGGCAGCGCGTTGAACGGATTTTGTACTCGCATCGA
CCGCCCTGCTCAGGCCAGCAAATCAGAAGCACTTTCACCAGAGGGGTGGA
GTCTCGGCTCCTTGAGGGGCCTGCTCAGACCAGC
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